Rh6BG490200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0019205
Physical Location & Seq
Reverse (-)
69393825 .. 69394682
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG490200.1

Sequence Viewer

Length: 342 bp
ATGACCTTTTCCCTTTTCTTCCACACCTTGCCAAAGCTCACAAAGCCATACAGCTTTTCCATGCGGTTTCCTCTGTCATTCTCCAATTACAAAATGGAGTTGCAGCGGAGATTAATAGTGCTGGTGTTTCTTGCACTGGTAGTCTCCGGCTATAAAGAAAATTCTACAACAACACCACCAGTTAGTGTTCATGATCAGCTGCAGTACTCGTCGCGAAATCTGGAAGCAAAGCAAAAGGTAAACGAGGAGAAGAAGCGCCTAAGGCACCACTACTCATTTGAAGCCTTCTTTGCAAACAAGAGGAAAGTTCCAAACGCTTCGGACCCGCTCCATAATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.35

Weight (kDa)

10.16

Isoelectric Point (pI)

53.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019205)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33550
prunus_persica Prupe.1G428300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0308941
rosa_roxburghii Rroxscaffold_7G00159790
rosa_samantha Rh6AG481100 Rh6BG490200 Rh6CG495500 Rh6DG481400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 264
AccBSI CCGCTC 1 cut(s) 328
AccII CGCG 1 cut(s) 214
AciI CCGC 3 cut(s) 64, 106, 326
AcsI RAATTY 1 cut(s) 160
AfaI GTAC 1 cut(s) 206
AgsI TTSAA 1 cut(s) 281
AluBI AGCT 3 cut(s) 37, 54, 199
AluI AGCT 3 cut(s) 37, 54, 199
Alw26I GTCTC 1 cut(s) 148
ApeKI GCWGC 2 cut(s) 103, 199
ApoI RAATTY 1 cut(s) 160
AseI ATTAAT 1 cut(s) 113
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 322
AvaII GGWCC 1 cut(s) 322
AxyI CCTNAGG 1 cut(s) 260
BanI GGYRCC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 115, 186
BclI TGATCA 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 148
BfmI CTRYAG 1 cut(s) 200
BfoI RGCGCY 1 cut(s) 259
BisI GCNGC 2 cut(s) 104, 200
BlsI GCNGC 2 cut(s) 105, 201
BmcAI AGTACT 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 2 cut(s) 266, 324
Bse1I ACTGG 2 cut(s) 141, 179
Bse21I CCTNAGG 1 cut(s) 260
BseNI ACTGG 2 cut(s) 141, 179
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 2 cut(s) 115, 186
Bsh1236I CGCG 1 cut(s) 214
BshNI GGYRCC 1 cut(s) 264
BsiSI CCGG 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 148
Bsp143I GATC 1 cut(s) 193
Bsp68I TCGCGA 1 cut(s) 214
BspACI CCGC 3 cut(s) 64, 106, 326
BspFNI CGCG 1 cut(s) 214
BspHI TCATGA 1 cut(s) 190
BspLI GGNNCC 2 cut(s) 266, 324
BspMAI CTGCAG 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 264
BsrBI CCGCTC 1 cut(s) 328
BsrI ACTGG 2 cut(s) 141, 179
BssMI GATC 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 260
BstFNI CGCG 1 cut(s) 214
BstH2I RGCGCY 1 cut(s) 259
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 3 cut(s) 43, 262, 290
BstSFI CTRYAG 1 cut(s) 200
BstUI CGCG 1 cut(s) 214
BstV1I GCAGC 2 cut(s) 115, 186
Bsu36I CCTNAGG 1 cut(s) 260
BtsIMutI CAGTG 1 cut(s) 134
BtuMI TCGCGA 1 cut(s) 214
CciI TCATGA 1 cut(s) 190
CfoI GCGC 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 322
Csp6I GTAC 1 cut(s) 205
CviAII CATG 2 cut(s) 61, 191
CviJI RGCY 6 cut(s) 37, 46, 54, 150, 199, 284
CviKI_1 RGCY 6 cut(s) 37, 46, 54, 150, 199, 284
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 260
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 322
Eco81I CCTNAGG 1 cut(s) 260
FaeI CATG 2 cut(s) 64, 194
FaiI YATR 5 cut(s) 49, 62, 153, 192, 333
FatI CATG 2 cut(s) 60, 190
FauI CCCGC 1 cut(s) 333
FbaI TGATCA 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 104, 200
Fsp4HI GCNGC 2 cut(s) 104, 200
GlaI GCGC 1 cut(s) 257
GluI GCNGC 2 cut(s) 104, 200
HaeII RGCGCY 1 cut(s) 259
HapII CCGG 1 cut(s) 147
HhaI GCGC 1 cut(s) 258
Hin1II CATG 2 cut(s) 64, 194
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HpaII CCGG 1 cut(s) 147
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 3 cut(s) 191, 213, 221
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 1 cut(s) 295
HpyCH4V TGCA 4 cut(s) 103, 134, 202, 293
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 262, 290
HpyF3I CTNAG 1 cut(s) 260
Hsp92II CATG 2 cut(s) 64, 194
HspAI GCGC 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 1 cut(s) 333
LpnPI CCDG 5 cut(s) 107, 122, 160, 192, 206
Lsp1109I GCAGC 2 cut(s) 115, 186
MalI GATC 1 cut(s) 195
MbiI CCGCTC 1 cut(s) 328
MboI GATC 1 cut(s) 193
MboII GAAGA 2 cut(s) 10, 262
MluCI AATT 2 cut(s) 85, 160
MnlI CCTC 3 cut(s) 81, 238, 294
MseI TTAA 1 cut(s) 113
MspA1I CMGCKG 2 cut(s) 106, 199
MspI CCGG 1 cut(s) 147
MvnI CGCG 1 cut(s) 214
MwoI GCNNNNNNNGC 3 cut(s) 43, 262, 290
NdeII GATC 1 cut(s) 193
NlaIII CATG 2 cut(s) 64, 194
NlaIV GGNNCC 2 cut(s) 266, 324
NruI TCGCGA 1 cut(s) 214
PagI TCATGA 1 cut(s) 190
PkrI GCNGC 2 cut(s) 105, 201
PshBI ATTAAT 1 cut(s) 113
PspN4I GGNNCC 2 cut(s) 266, 324
PspPI GGNCC 1 cut(s) 322
PstI CTGCAG 1 cut(s) 204
PvuII CAGCTG 1 cut(s) 199
RruI TCGCGA 1 cut(s) 214
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 2 cut(s) 104, 200
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 322
ScaI AGTACT 1 cut(s) 206
SetI ASST 6 cut(s) 8, 29, 39, 56, 201, 240
SfcI CTRYAG 1 cut(s) 200
SinI GGWCC 1 cut(s) 322
Sse9I AATT 2 cut(s) 85, 160
SsiI CCGC 3 cut(s) 64, 106, 326
TasI AATT 2 cut(s) 85, 160
TatI WGTACW 1 cut(s) 204
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TscAI CASTG 1 cut(s) 141
TseI GCWGC 2 cut(s) 103, 199
TspDTI ATGAA 1 cut(s) 179
TspRI CASTG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 322
VspI ATTAAT 1 cut(s) 113
XapI RAATTY 1 cut(s) 160
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
ZrmI AGTACT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.