Prupe.1G428300_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
36795650 .. 36796418
769 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G428300.1

Sequence Viewer

Length: 255 bp
ATGCAATTTCAGAACCTTGTGTTAATGGTGTTGGTTTTTTTCTCAATGCTGGTCTCTGGGTACAAGGAAAACACGATGCCACTATCTGTACCCAATAATGTGGAGCAAAACCAACAAGAACATGAGGATGATATGAATAAGCGGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGCGGTTGAGGCACTCATTTGAGGCCTTCTTTTCAAGCAAGAGGAAAGTTCCAAACGCTTCTGACCCGCTCCATAATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

10.0

Weight (kDa)

8.2

Isoelectric Point (pI)

65.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019205)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33550
prunus_persica Prupe.1G428300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0308941
rosa_roxburghii Rroxscaffold_7G00159790
rosa_samantha Rh6AG481100 Rh6BG490200 Rh6CG495500 Rh6DG481400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 241
AciI CCGC 3 cut(s) 142, 175, 239
AcoI YGGCCR 1 cut(s) 143
AfaI GTAC 2 cut(s) 62, 90
AgsI TTSAA 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 58
AoxI GGCC 2 cut(s) 143, 195
ApeKI GCWGC 8 cut(s) 151, 154, 157, 160, 163, 166, 169, 172
BbvI GCAGC 8 cut(s) 163, 166, 169, 172, 175, 178, 181, 184
BcoDI GTCTC 1 cut(s) 58
BisI GCNGC 9 cut(s) 143, 152, 155, 158, 161, 164, 167, 170, 173
BlsI GCNGC 9 cut(s) 144, 153, 156, 159, 162, 165, 168, 171, 174
BmsI GCATC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 58
BseGI GGATG 1 cut(s) 133
BseXI GCAGC 8 cut(s) 163, 166, 169, 172, 175, 178, 181, 184
BshFI GGCC 2 cut(s) 145, 197
BsmAI GTCTC 1 cut(s) 58
BsnI GGCC 2 cut(s) 145, 197
Bso31I GGTCTC 1 cut(s) 58
BspACI CCGC 3 cut(s) 142, 175, 239
BspANI GGCC 2 cut(s) 145, 197
BspTNI GGTCTC 1 cut(s) 58
BsrBI CCGCTC 1 cut(s) 241
BstF5I GGATG 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 58
BstMWI GCNNNNNNNGC 9 cut(s) 148, 151, 157, 160, 163, 166, 169, 172, 181
BstV1I GCAGC 8 cut(s) 163, 166, 169, 172, 175, 178, 181, 184
BstXI CCANNNNNNTGG 1 cut(s) 100
BsuRI GGCC 2 cut(s) 145, 197
BtsCI GGATG 1 cut(s) 133
Csp6I GTAC 2 cut(s) 61, 89
CviAII CATG 1 cut(s) 122
CviJI RGCY 2 cut(s) 145, 197
CviKI_1 RGCY 2 cut(s) 145, 197
CviQI GTAC 2 cut(s) 61, 89
EaeI YGGCCR 1 cut(s) 143
Eco147I AGGCCT 1 cut(s) 197
Eco31I GGTCTC 1 cut(s) 58
FaeI CATG 1 cut(s) 125
FaiI YATR 3 cut(s) 123, 134, 246
FatI CATG 1 cut(s) 121
FauI CCCGC 1 cut(s) 246
Fnu4HI GCNGC 9 cut(s) 143, 152, 155, 158, 161, 164, 167, 170, 173
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 9 cut(s) 143, 152, 155, 158, 161, 164, 167, 170, 173
GluI GCNGC 9 cut(s) 143, 152, 155, 158, 161, 164, 167, 170, 173
HaeIII GGCC 2 cut(s) 145, 197
Hin1II CATG 1 cut(s) 125
Hpy188I TCNGA 2 cut(s) 12, 235
HpyAV CCTTC 1 cut(s) 208
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 9 cut(s) 148, 151, 157, 160, 163, 166, 169, 172, 181
Hsp92II CATG 1 cut(s) 125
LmnI GCTCC 2 cut(s) 103, 246
LpnPI CCDG 2 cut(s) 35, 42
Lsp1109I GCAGC 8 cut(s) 163, 166, 169, 172, 175, 178, 181, 184
LweI GCATC 1 cut(s) 66
MbiI CCGCTC 1 cut(s) 241
MluCI AATT 1 cut(s) 5
MnlI CCTC 4 cut(s) 118, 174, 187, 207
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 175
MwoI GCNNNNNNNGC 9 cut(s) 148, 151, 157, 160, 163, 166, 169, 172, 181
NlaIII CATG 1 cut(s) 125
PceI AGGCCT 1 cut(s) 197
PkrI GCNGC 9 cut(s) 144, 153, 156, 159, 162, 165, 168, 171, 174
RsaI GTAC 2 cut(s) 62, 90
RsaNI GTAC 2 cut(s) 61, 89
RseI CAYNNNNRTG 1 cut(s) 126
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 9 cut(s) 143, 152, 155, 158, 161, 164, 167, 170, 173
SetI ASST 1 cut(s) 18
SfaNI GCATC 1 cut(s) 66
SmiMI CAYNNNNRTG 1 cut(s) 126
Sse9I AATT 1 cut(s) 5
SseBI AGGCCT 1 cut(s) 197
SsiI CCGC 3 cut(s) 142, 175, 239
StuI AGGCCT 1 cut(s) 197
TasI AATT 1 cut(s) 5
TauI GCSGC 1 cut(s) 145
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TseI GCWGC 8 cut(s) 151, 154, 157, 160, 163, 166, 169, 172
TspDTI ATGAA 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.