Rh6DG481400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0019205
Physical Location & Seq
Reverse (-)
64550601 .. 64551472
872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG481400.1

Sequence Viewer

Length: 345 bp
ATGACCTTTTCCCTTTTCTTCCACACCTTGCCAAAGCTCACAAAGCCATACAGCTTTTCCATGCGGTTTCCTCTGTCATTCTCCAATTACAAAATGGAATTGCAGCGGAGATTAATAGTGCTGGTGTTTCTTGCACTGGTAGTCTCCGGCTATAAAGAAAATTCGACAACAACACCACCAGTTAGTAGTGTTCATGATCAGCTGCAGTACTCGTCGCGAAATCTGGAAGCAAAGCAAAAGGTAAACGAGGAGAAGAAGCGCCTAAGGCACCACTACTCATTTGAAGCCTTCTTTGCAAACAAGAGGAAAGTTCCAAACGCTTCGGACCCGCTCCATAATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.44

Weight (kDa)

10.16

Isoelectric Point (pI)

54.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019205)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33550
prunus_persica Prupe.1G428300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0308941
rosa_roxburghii Rroxscaffold_7G00159790
rosa_samantha Rh6AG481100 Rh6BG490200 Rh6CG495500 Rh6DG481400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 267
AccBSI CCGCTC 1 cut(s) 331
AccII CGCG 1 cut(s) 217
AciI CCGC 3 cut(s) 64, 106, 329
AcsI RAATTY 1 cut(s) 160
AfaI GTAC 1 cut(s) 209
AgsI TTSAA 1 cut(s) 284
AluBI AGCT 3 cut(s) 37, 54, 202
AluI AGCT 3 cut(s) 37, 54, 202
Alw26I GTCTC 1 cut(s) 148
ApeKI GCWGC 2 cut(s) 103, 202
ApoI RAATTY 1 cut(s) 160
AseI ATTAAT 1 cut(s) 113
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 325
AvaII GGWCC 1 cut(s) 325
AxyI CCTNAGG 1 cut(s) 263
BanI GGYRCC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 115, 189
BclI TGATCA 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 148
BfmI CTRYAG 1 cut(s) 203
BfoI RGCGCY 1 cut(s) 262
BisI GCNGC 2 cut(s) 104, 203
BlsI GCNGC 2 cut(s) 105, 204
BmcAI AGTACT 1 cut(s) 209
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 325
BmiI GGNNCC 2 cut(s) 269, 327
Bse1I ACTGG 2 cut(s) 141, 179
Bse21I CCTNAGG 1 cut(s) 263
BseNI ACTGG 2 cut(s) 141, 179
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 2 cut(s) 115, 189
Bsh1236I CGCG 1 cut(s) 217
BshNI GGYRCC 1 cut(s) 267
BsiSI CCGG 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 148
Bsp143I GATC 1 cut(s) 196
Bsp68I TCGCGA 1 cut(s) 217
BspACI CCGC 3 cut(s) 64, 106, 329
BspFNI CGCG 1 cut(s) 217
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 2 cut(s) 269, 327
BspMAI CTGCAG 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 267
BsrBI CCGCTC 1 cut(s) 331
BsrI ACTGG 2 cut(s) 141, 179
BssMI GATC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 263
BstFNI CGCG 1 cut(s) 217
BstH2I RGCGCY 1 cut(s) 262
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 3 cut(s) 43, 265, 293
BstSFI CTRYAG 1 cut(s) 203
BstUI CGCG 1 cut(s) 217
BstV1I GCAGC 2 cut(s) 115, 189
Bsu36I CCTNAGG 1 cut(s) 263
BtsIMutI CAGTG 1 cut(s) 134
BtuMI TCGCGA 1 cut(s) 217
CciI TCATGA 1 cut(s) 193
CfoI GCGC 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 208
CviAII CATG 2 cut(s) 61, 194
CviJI RGCY 6 cut(s) 37, 46, 54, 150, 202, 287
CviKI_1 RGCY 6 cut(s) 37, 46, 54, 150, 202, 287
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 1 cut(s) 263
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 325
Eco81I CCTNAGG 1 cut(s) 263
FaeI CATG 2 cut(s) 64, 197
FaiI YATR 5 cut(s) 49, 62, 153, 195, 336
FatI CATG 2 cut(s) 60, 193
FauI CCCGC 1 cut(s) 336
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 2 cut(s) 104, 203
Fsp4HI GCNGC 2 cut(s) 104, 203
GlaI GCGC 1 cut(s) 260
GluI GCNGC 2 cut(s) 104, 203
HaeII RGCGCY 1 cut(s) 262
HapII CCGG 1 cut(s) 147
HhaI GCGC 1 cut(s) 261
Hin1II CATG 2 cut(s) 64, 197
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HpaII CCGG 1 cut(s) 147
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 325
Hpy188III TCNNGA 3 cut(s) 194, 216, 224
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 298
HpyCH4V TGCA 4 cut(s) 103, 134, 205, 296
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 265, 293
HpyF3I CTNAG 1 cut(s) 263
Hsp92II CATG 2 cut(s) 64, 197
HspAI GCGC 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 336
LpnPI CCDG 5 cut(s) 107, 122, 160, 192, 209
Lsp1109I GCAGC 2 cut(s) 115, 189
MalI GATC 1 cut(s) 198
MbiI CCGCTC 1 cut(s) 331
MboI GATC 1 cut(s) 196
MboII GAAGA 2 cut(s) 10, 265
MluCI AATT 3 cut(s) 85, 98, 160
MnlI CCTC 3 cut(s) 81, 241, 297
MseI TTAA 1 cut(s) 113
MspA1I CMGCKG 2 cut(s) 106, 202
MspI CCGG 1 cut(s) 147
MvnI CGCG 1 cut(s) 217
MwoI GCNNNNNNNGC 3 cut(s) 43, 265, 293
NdeII GATC 1 cut(s) 196
NlaIII CATG 2 cut(s) 64, 197
NlaIV GGNNCC 2 cut(s) 269, 327
NruI TCGCGA 1 cut(s) 217
PagI TCATGA 1 cut(s) 193
PkrI GCNGC 2 cut(s) 105, 204
PshBI ATTAAT 1 cut(s) 113
PspN4I GGNNCC 2 cut(s) 269, 327
PspPI GGNCC 1 cut(s) 325
PstI CTGCAG 1 cut(s) 207
PvuII CAGCTG 1 cut(s) 202
RruI TCGCGA 1 cut(s) 217
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 2 cut(s) 104, 203
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 1 cut(s) 325
ScaI AGTACT 1 cut(s) 209
SetI ASST 6 cut(s) 8, 29, 39, 56, 204, 243
SfcI CTRYAG 1 cut(s) 203
SinI GGWCC 1 cut(s) 325
Sse9I AATT 3 cut(s) 85, 98, 160
SsiI CCGC 3 cut(s) 64, 106, 329
TaqI TCGA 1 cut(s) 164
TasI AATT 3 cut(s) 85, 98, 160
TatI WGTACW 1 cut(s) 207
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TscAI CASTG 1 cut(s) 141
TseI GCWGC 2 cut(s) 103, 202
TspDTI ATGAA 1 cut(s) 182
TspRI CASTG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 325
VspI ATTAAT 1 cut(s) 113
XapI RAATTY 1 cut(s) 160
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
ZrmI AGTACT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.