Rroxscaffold_7G00159790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0019205
Physical Location & Seq
Forward (+)
2873551 .. 2874959
1409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00159790.1

Sequence Viewer

Length: 369 bp
ATGATGAAAGCACGTGGTTTGGACCAATTGTTCAATTTTGTTGATAATCTCTTTTCTAATACACTCACAAAGCCATACAGCTTTTCCATGCGGTTTCCTCTTTCATTCTCCAATTACAAAATGGAGTTGCAGCGGAGATTAATAGTGCTGGTGTTTCTTGCACTGGTAGTCTCCGGCTATAAAGAAAATTCGACAAAAAATCCACCAGTTAGTGTTCATGATCAGCTGCAGTACTCGTCGCGAAATCTGGAAGCAAAGCAAAAGGTAAACGAGGAGAAGAAGCGCCTAAGGCACCACTACTCATTTGAAGCCTTCCTTGCAAACAAGAGGAAAGTTCCAAACGCTTCGGACCCGCTCCATAATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.35

Weight (kDa)

10.1

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019205)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33550
prunus_persica Prupe.1G428300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0308941
rosa_roxburghii Rroxscaffold_7G00159790
rosa_samantha Rh6AG481100 Rh6BG490200 Rh6CG495500 Rh6DG481400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 291
AccBSI CCGCTC 1 cut(s) 355
AccII CGCG 1 cut(s) 241
AciI CCGC 3 cut(s) 91, 133, 353
AcsI RAATTY 1 cut(s) 187
AcvI CACGTG 1 cut(s) 14
AfaI GTAC 1 cut(s) 233
AgsI TTSAA 2 cut(s) 34, 308
AloI GAACNNNNNNTCC 2 cut(s) 14, 46
AluBI AGCT 2 cut(s) 81, 226
AluI AGCT 2 cut(s) 81, 226
Alw26I GTCTC 1 cut(s) 175
ApeKI GCWGC 2 cut(s) 130, 226
ApoI RAATTY 1 cut(s) 187
AseI ATTAAT 1 cut(s) 140
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 2 cut(s) 22, 349
AvaII GGWCC 2 cut(s) 22, 349
AxyI CCTNAGG 1 cut(s) 287
BanI GGYRCC 1 cut(s) 291
BbrPI CACGTG 1 cut(s) 14
BbvI GCAGC 2 cut(s) 142, 213
BclI TGATCA 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 175
BfmI CTRYAG 1 cut(s) 227
BfoI RGCGCY 1 cut(s) 286
BisI GCNGC 2 cut(s) 131, 227
BlsI GCNGC 2 cut(s) 132, 228
BmcAI AGTACT 1 cut(s) 233
Bme18I GGWCC 2 cut(s) 22, 349
BmgT120I GGNCC 2 cut(s) 22, 349
BmiI GGNNCC 2 cut(s) 293, 351
BsaAI YACGTR 1 cut(s) 14
Bse1I ACTGG 2 cut(s) 168, 206
Bse21I CCTNAGG 1 cut(s) 287
BseNI ACTGG 2 cut(s) 168, 206
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 2 cut(s) 142, 213
Bsh1236I CGCG 1 cut(s) 241
BshNI GGYRCC 1 cut(s) 291
BsiSI CCGG 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 175
Bsp143I GATC 1 cut(s) 220
Bsp68I TCGCGA 1 cut(s) 241
BspACI CCGC 3 cut(s) 91, 133, 353
BspFNI CGCG 1 cut(s) 241
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 293, 351
BspMAI CTGCAG 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 291
BsrBI CCGCTC 1 cut(s) 355
BsrI ACTGG 2 cut(s) 168, 206
BssMI GATC 1 cut(s) 220
BstBAI YACGTR 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 287
BstFNI CGCG 1 cut(s) 241
BstH2I RGCGCY 1 cut(s) 286
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 2 cut(s) 289, 317
BstSFI CTRYAG 1 cut(s) 227
BstUI CGCG 1 cut(s) 241
BstV1I GCAGC 2 cut(s) 142, 213
Bsu36I CCTNAGG 1 cut(s) 287
BtsIMutI CAGTG 1 cut(s) 161
BtuMI TCGCGA 1 cut(s) 241
CciI TCATGA 1 cut(s) 217
CfoI GCGC 1 cut(s) 285
Cfr13I GGNCC 2 cut(s) 22, 349
Csp6I GTAC 1 cut(s) 232
CviAII CATG 2 cut(s) 88, 218
CviJI RGCY 5 cut(s) 73, 81, 177, 226, 311
CviKI_1 RGCY 5 cut(s) 73, 81, 177, 226, 311
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 1 cut(s) 287
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eco47I GGWCC 2 cut(s) 22, 349
Eco72I CACGTG 1 cut(s) 14
Eco81I CCTNAGG 1 cut(s) 287
FaeI CATG 2 cut(s) 91, 221
FaiI YATR 5 cut(s) 76, 89, 180, 219, 360
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FatI CATG 2 cut(s) 87, 217
FauI CCCGC 1 cut(s) 360
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 2 cut(s) 131, 227
Fsp4HI GCNGC 2 cut(s) 131, 227
GlaI GCGC 1 cut(s) 284
GluI GCNGC 2 cut(s) 131, 227
HaeII RGCGCY 1 cut(s) 286
HapII CCGG 1 cut(s) 174
HhaI GCGC 1 cut(s) 285
Hin1II CATG 2 cut(s) 91, 221
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HpaII CCGG 1 cut(s) 174
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 3 cut(s) 218, 240, 248
Hpy8I GTNNAC 1 cut(s) 268
Hpy99I CGWCG 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 322
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 4 cut(s) 130, 161, 229, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 289, 317
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 2 cut(s) 91, 221
HspAI GCGC 1 cut(s) 283
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 360
LpnPI CCDG 5 cut(s) 134, 149, 187, 219, 233
Lsp1109I GCAGC 2 cut(s) 142, 213
MaeII ACGT 1 cut(s) 13
MalI GATC 1 cut(s) 222
MbiI CCGCTC 1 cut(s) 355
MboI GATC 1 cut(s) 220
MboII GAAGA 1 cut(s) 289
MfeI CAATTG 1 cut(s) 26
MluCI AATT 4 cut(s) 26, 34, 112, 187
MnlI CCTC 3 cut(s) 108, 265, 321
MseI TTAA 1 cut(s) 140
MspA1I CMGCKG 2 cut(s) 133, 226
MspI CCGG 1 cut(s) 174
MunI CAATTG 1 cut(s) 26
MvnI CGCG 1 cut(s) 241
MwoI GCNNNNNNNGC 2 cut(s) 289, 317
NdeII GATC 1 cut(s) 220
NlaIII CATG 2 cut(s) 91, 221
NlaIV GGNNCC 2 cut(s) 293, 351
NruI TCGCGA 1 cut(s) 241
PagI TCATGA 1 cut(s) 217
PkrI GCNGC 2 cut(s) 132, 228
PmaCI CACGTG 1 cut(s) 14
PmlI CACGTG 1 cut(s) 14
Ppu21I YACGTR 1 cut(s) 14
PshBI ATTAAT 1 cut(s) 140
PspCI CACGTG 1 cut(s) 14
PspN4I GGNNCC 2 cut(s) 293, 351
PspPI GGNCC 2 cut(s) 22, 349
PstI CTGCAG 1 cut(s) 231
PvuII CAGCTG 1 cut(s) 226
RruI TCGCGA 1 cut(s) 241
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 2 cut(s) 131, 227
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 2 cut(s) 22, 349
ScaI AGTACT 1 cut(s) 233
SetI ASST 4 cut(s) 16, 83, 228, 267
SfcI CTRYAG 1 cut(s) 227
SinI GGWCC 2 cut(s) 22, 349
Sse9I AATT 4 cut(s) 26, 34, 112, 187
SsiI CCGC 3 cut(s) 91, 133, 353
TaiI ACGT 1 cut(s) 16
TaqI TCGA 1 cut(s) 191
TasI AATT 4 cut(s) 26, 34, 112, 187
TatI WGTACW 1 cut(s) 231
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TscAI CASTG 1 cut(s) 168
TseI GCWGC 2 cut(s) 130, 226
TspDTI ATGAA 3 cut(s) 20, 93, 206
TspRI CASTG 1 cut(s) 168
VpaK11BI GGWCC 2 cut(s) 22, 349
VspI ATTAAT 1 cut(s) 140
XapI RAATTY 1 cut(s) 187
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
ZrmI AGTACT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.