Rh6AG481100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0019205
Physical Location & Seq
Reverse (-)
66211981 .. 66212811
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG481100.1

Sequence Viewer

Length: 414 bp
ATGTTAGTGTTCGTCTCGTGCGAAGTGTCCCTTGTTTGCAGGGTGTACTCAATGCCCCCACCACCACCTTTTAATGACCTTTTCCCTTTCTTCCACACCTTGCCAAAGCTCACAAAGCCATACAGCTTTTCCATGCGGTTTCCTCTTTCATTCTCCAATTACAAAATGGAGTTGCAGCGGAGATTAATAGTGCTGGTGTTTCTTGCACTGGTAGTCTCCGGCTATAAAGAAAATTCGACAACAACACCACCAGTTAGTGTTCATGATCAGCTGCAGTACTCGTCGCGAAATCTGGAAGCAAAGCAAAAGGTAAACGAGGAGAAGAAGCGCCTAAGGCACCACTACTCATTTGAAGCCTTCTTTGCAAACAAGAGGAAAGTTCCAAACGCTTCGGACCCGCTCCATAATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

16.04

Weight (kDa)

9.8

Isoelectric Point (pI)

59.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019205)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33550
prunus_persica Prupe.1G428300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0308941
rosa_roxburghii Rroxscaffold_7G00159790
rosa_samantha Rh6AG481100 Rh6BG490200 Rh6CG495500 Rh6DG481400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 336
AccBSI CCGCTC 1 cut(s) 400
AccII CGCG 1 cut(s) 286
AciI CCGC 3 cut(s) 136, 178, 398
AcsI RAATTY 1 cut(s) 232
AfaI GTAC 2 cut(s) 47, 278
AgsI TTSAA 1 cut(s) 353
AluBI AGCT 3 cut(s) 109, 126, 271
AluI AGCT 3 cut(s) 109, 126, 271
Alw26I GTCTC 2 cut(s) 19, 220
ApeKI GCWGC 2 cut(s) 175, 271
ApoI RAATTY 1 cut(s) 232
AseI ATTAAT 1 cut(s) 185
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 1 cut(s) 394
AvaII GGWCC 1 cut(s) 394
AxyI CCTNAGG 1 cut(s) 332
BanI GGYRCC 1 cut(s) 336
BauI CACGAG 1 cut(s) 16
BbvI GCAGC 2 cut(s) 187, 258
BclI TGATCA 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 19, 220
BfmI CTRYAG 1 cut(s) 272
BfoI RGCGCY 1 cut(s) 331
BisI GCNGC 2 cut(s) 176, 272
BlsI GCNGC 2 cut(s) 177, 273
BmcAI AGTACT 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 394
BmiI GGNNCC 2 cut(s) 338, 396
Bse1I ACTGG 2 cut(s) 213, 251
Bse21I CCTNAGG 1 cut(s) 332
BseNI ACTGG 2 cut(s) 213, 251
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 2 cut(s) 187, 258
Bsh1236I CGCG 1 cut(s) 286
BshNI GGYRCC 1 cut(s) 336
BsiSI CCGG 1 cut(s) 219
BslFI GGGAC 1 cut(s) 13
BsmAI GTCTC 2 cut(s) 19, 220
BsmBI CGTCTC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 265
Bsp68I TCGCGA 1 cut(s) 286
BspACI CCGC 3 cut(s) 136, 178, 398
BspFNI CGCG 1 cut(s) 286
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 2 cut(s) 338, 396
BspMAI CTGCAG 1 cut(s) 276
BspT107I GGYRCC 1 cut(s) 336
BsrBI CCGCTC 1 cut(s) 400
BsrI ACTGG 2 cut(s) 213, 251
BssMI GATC 1 cut(s) 265
BssSI CACGAG 1 cut(s) 16
Bst2BI CACGAG 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 332
BstFNI CGCG 1 cut(s) 286
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 1 cut(s) 268
BstMAI GTCTC 2 cut(s) 19, 220
BstMBI GATC 1 cut(s) 265
BstMWI GCNNNNNNNGC 3 cut(s) 115, 334, 362
BstSFI CTRYAG 1 cut(s) 272
BstUI CGCG 1 cut(s) 286
BstV1I GCAGC 2 cut(s) 187, 258
Bsu36I CCTNAGG 1 cut(s) 332
BtsIMutI CAGTG 1 cut(s) 206
BtuMI TCGCGA 1 cut(s) 286
CciI TCATGA 1 cut(s) 262
CfoI GCGC 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 394
Csp6I GTAC 2 cut(s) 46, 277
CviAII CATG 2 cut(s) 133, 263
CviJI RGCY 6 cut(s) 109, 118, 126, 222, 271, 356
CviKI_1 RGCY 6 cut(s) 109, 118, 126, 222, 271, 356
CviQI GTAC 2 cut(s) 46, 277
DdeI CTNAG 1 cut(s) 332
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 394
Eco81I CCTNAGG 1 cut(s) 332
Esp3I CGTCTC 1 cut(s) 19
FaeI CATG 2 cut(s) 136, 266
FaiI YATR 5 cut(s) 121, 134, 225, 264, 405
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FaqI GGGAC 1 cut(s) 13
FatI CATG 2 cut(s) 132, 262
FauI CCCGC 1 cut(s) 405
FbaI TGATCA 1 cut(s) 265
Fnu4HI GCNGC 2 cut(s) 176, 272
Fsp4HI GCNGC 2 cut(s) 176, 272
GlaI GCGC 1 cut(s) 329
GluI GCNGC 2 cut(s) 176, 272
HaeII RGCGCY 1 cut(s) 331
HapII CCGG 1 cut(s) 219
HhaI GCGC 1 cut(s) 330
Hin1II CATG 2 cut(s) 136, 266
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HpaII CCGG 1 cut(s) 219
Hpy166II GTNNAC 2 cut(s) 46, 313
Hpy188I TCNGA 1 cut(s) 394
Hpy188III TCNNGA 3 cut(s) 263, 285, 293
Hpy8I GTNNAC 2 cut(s) 46, 313
Hpy99I CGWCG 1 cut(s) 286
HpyAV CCTTC 1 cut(s) 367
HpyCH4V TGCA 5 cut(s) 39, 175, 206, 274, 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 334, 362
HpyF3I CTNAG 1 cut(s) 332
Hsp92II CATG 2 cut(s) 136, 266
HspAI GCGC 1 cut(s) 328
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 1 cut(s) 265
LmnI GCTCC 1 cut(s) 405
LpnPI CCDG 6 cut(s) 25, 179, 194, 232, 264, 278
Lsp1109I GCAGC 2 cut(s) 187, 258
MalI GATC 1 cut(s) 267
MbiI CCGCTC 1 cut(s) 400
MboI GATC 1 cut(s) 265
MboII GAAGA 2 cut(s) 82, 334
MluCI AATT 2 cut(s) 157, 232
MnlI CCTC 3 cut(s) 153, 310, 366
MseI TTAA 2 cut(s) 72, 185
MspA1I CMGCKG 2 cut(s) 178, 271
MspI CCGG 1 cut(s) 219
MvnI CGCG 1 cut(s) 286
MwoI GCNNNNNNNGC 3 cut(s) 115, 334, 362
NdeII GATC 1 cut(s) 265
NlaIII CATG 2 cut(s) 136, 266
NlaIV GGNNCC 2 cut(s) 338, 396
NruI TCGCGA 1 cut(s) 286
PagI TCATGA 1 cut(s) 262
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PkrI GCNGC 2 cut(s) 177, 273
PshBI ATTAAT 1 cut(s) 185
PspN4I GGNNCC 2 cut(s) 338, 396
PspPI GGNCC 1 cut(s) 394
PstI CTGCAG 1 cut(s) 276
PvuII CAGCTG 1 cut(s) 271
RruI TCGCGA 1 cut(s) 286
RsaI GTAC 2 cut(s) 47, 278
RsaNI GTAC 2 cut(s) 46, 277
SaqAI TTAA 2 cut(s) 72, 185
SatI GCNGC 2 cut(s) 176, 272
Sau3AI GATC 1 cut(s) 265
Sau96I GGNCC 1 cut(s) 394
ScaI AGTACT 1 cut(s) 278
SetI ASST 7 cut(s) 70, 81, 101, 111, 128, 273, 312
SfcI CTRYAG 1 cut(s) 272
SinI GGWCC 1 cut(s) 394
Sse9I AATT 2 cut(s) 157, 232
SsiI CCGC 3 cut(s) 136, 178, 398
TaqI TCGA 1 cut(s) 236
TasI AATT 2 cut(s) 157, 232
TatI WGTACW 2 cut(s) 45, 276
Tru1I TTAA 2 cut(s) 72, 185
Tru9I TTAA 2 cut(s) 72, 185
TscAI CASTG 1 cut(s) 213
TseI GCWGC 2 cut(s) 175, 271
TspDTI ATGAA 2 cut(s) 138, 251
TspRI CASTG 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 394
VspI ATTAAT 1 cut(s) 185
XapI RAATTY 1 cut(s) 232
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
ZrmI AGTACT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.