Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015559

Physical Location & Seq

Genomic Coordinates Reverse (-)

26377834 .. 26381544

Gene Structure 3711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g35840.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGCGTCTATTAGAAGAACATTGTCTCCAGTGCCTCGAGCAGGAATTCCGCTGAATGGGGAAGTCTGTTCGGTTGCTTCTCCTTTGTCCAAGTCATCATCTTGTACTCAGAACTATCCATCATCCAATGGATTCTTGTCATCCTTGGCAGCTTCATTAGATTCTCAAGCTTTTGTTCTCGGTGTTTTTTCTCCAAGGACTTCTAGGCCTTTTGAGAAATCAAAACCCAAGGGGCAAGTTTGGAGAAGGGCGCTTTCCCATTTCTTCATTTGTTTCATGCTTGGTATCTTTATTGGGGCTACGCCTTTTGCATCAATGACTTTATCAGCAAATCTCATGTCAAAGCATCAAGACTTATCCTTTGAAATGGTATCCTCAGTCGGGTTTCATCAGTTACATGGTAGTGTATCCAGAAATGTAACACCATCAGGTAGTAGGAAAATGCAGAAGAATGTTACAATGGAGTCACAAGTCAAGGAGTGGGGAACAACAGAAGGTATCATAGTTAAAAGTGATATGCAGAATCAATCACTCATTCAAGAAGCAGATTTGGAGTCCCGAAAGCTTCTGATAATCGTGACTCCAACTTATGCTCATCCGTTTCAAGCCCATAATCTGCATCGTTTGGCACACGTGTTAAAATTGGTCTCACCTCCATTGTTATGGATTGTTGTGGAAATGACCTCACAATCTGCGCAAACAACTGACATCTTGAGGAGAACTGGGATCATGTACAGACATCTTGTGTGCGAGAAAAATCTCACTGATGTAAGAGACAGAAGTGTTCATCAGAGAAACGTTGCACTTTTTCACATTGAAACTCACCGTCTTGATGGAATCATCTACTTTGCAGATGAGGACAACATCTACTCAGAAGATCTTTTTAAGCAAATGAGGCAGATTAGGCGGTTTGGAACATGGTCAGTTGCCAAAATAATAAGTAACAAAATGCAAGCTGCTATAGAGGGCCCGGTTTGTAATGGAACTCAAGTAATCGGATGGCATACATTTGAATCAAGTAGAAGATTGCAGAGATTCTATGCTCAAATATCAGGATTTGCCTTCAATAGCACTATACTCTGGGATCCCAAAAGGTGGCATCGACCGACTCTTGAACCTATCAGACAGCTTGACACAGGAAATGATGGTTTCCAGATGATGAAGAATAGGGTTCGAGGGTTACCAACTCGAACCCTAAATACTCCCTTACCACTCACAATGATGCCCTGGTTTAAGTTGCTAACTTTACTGATTTGCATTTCCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009832 GO:0009834 GO:0009987 GO:0010208 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0010584 GO:0010927 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0022607 GO:0030198 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0085029 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_43

Protein Analysis

423

Amino Acids

47.84

Weight (kDa)

10.02

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_43	PF03360	209 - 370	6.1e-54	Glycosyltransferase family 43

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015559)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35840 FvH4_2g35840 FvH4_2g35840
malus_domestica	MD08G1115800.v1.1
prunus_persica	Prupe.1G450500_v2.0.a1 Prupe.1G450500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0305981
rosa_laevigata	RLG00000010840
rosa_multiflora	Rmu_sc0001809.1_g000057
rosa_roxburghii	Rroxscaffold_7G00162170
rosa_rugosa	Rorug06G0345800
rosa_samantha	Rh6AG457700 Rh6BG443400 Rh6CG471800 Rh6DG458200
rosa_wichuraiana	Rw6G039930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	696
AccB7I	CCANNNNNTGG	1 cut(s)	1095
AciI	CCGC	2 cut(s)	50, 907
AclI	AACGTT	1 cut(s)	798
AclWI	GGATC	3 cut(s)	734, 1079, 1092
AcsI	RAATTY	1 cut(s)	45
AcvI	CACGTG	1 cut(s)	634
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	106, 734
AfiI	CCNNNNNNNGG	4 cut(s)	41, 56, 381, 1095
AflIII	ACRYGT	2 cut(s)	631, 633
AgsI	TTSAA	7 cut(s)	365, 539, 605, 818, 1013, 1066, 1115
AjnI	CCWGG	2 cut(s)	1226, 1262
AloI	GAACNNNNNNTCC	2 cut(s)	10, 42
AluBI	AGCT	5 cut(s)	152, 170, 565, 956, 1129
AluI	AGCT	5 cut(s)	152, 170, 565, 956, 1129
Alw26I	GTCTC	3 cut(s)	30, 652, 768
AlwI	GGATC	3 cut(s)	734, 1079, 1092
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	2 cut(s)	206, 967
ApaI	GGGCCC	1 cut(s)	971
ApeKI	GCWGC	2 cut(s)	149, 956
ApoI	RAATTY	1 cut(s)	45
ArsI	GACNNNNNNTTYG	4 cut(s)	323, 344, 355, 376
AspLEI	GCGC	2 cut(s)	253, 697
AspS9I	GGNCC	2 cut(s)	967, 968
AsuC2I	CCSGG	1 cut(s)	971
AsuHPI	GGTGA	2 cut(s)	642, 815
AvaI	CYCGRG	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	971
BamHI	GGATCC	1 cut(s)	1084
BanII	GRGCYC	1 cut(s)	971
BbrPI	CACGTG	1 cut(s)	634
BbvI	GCAGC	2 cut(s)	161, 943
BccI	CCATC	5 cut(s)	127, 433, 827, 993, 1139
BciT130I	CCWGG	2 cut(s)	1228, 1264
BciVI	GTATCC	2 cut(s)	382, 418
BcnI	CCSGG	1 cut(s)	971
BcoDI	GTCTC	3 cut(s)	30, 652, 768
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	1 cut(s)	960
BfoI	RGCGCY	1 cut(s)	254
BfuI	GTATCC	2 cut(s)	382, 418
BglII	AGATCT	1 cut(s)	877
BisI	GCNGC	2 cut(s)	150, 957
BlsI	GCNGC	2 cut(s)	151, 958
Bme1390I	CCNGG	3 cut(s)	971, 1228, 1264
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	967, 968
BmiI	GGNNCC	2 cut(s)	969, 1086
BmrFI	CCNGG	3 cut(s)	971, 1228, 1264
BmrI	ACTGGG	1 cut(s)	732
BmsI	GCATC	5 cut(s)	320, 355, 628, 1108, 1212
BmuI	ACTGGG	1 cut(s)	732
BpmI	CTGGAG	1 cut(s)	12
BpuEI	CTTGAG	3 cut(s)	150, 733, 972
BpuMI	CCSGG	1 cut(s)	971
BsaAI	YACGTR	1 cut(s)	634
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	652
BsaJI	CCNNGG	4 cut(s)	144, 194, 228, 1226
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 56, 381, 1095
Bse1I	ACTGG	2 cut(s)	29, 727
BseBI	CCWGG	2 cut(s)	1228, 1264
BseDI	CCNNGG	4 cut(s)	144, 194, 228, 1226
BseGI	GGATG	4 cut(s)	122, 140, 595, 1004
BseLI	CCNNNNNNNGG	4 cut(s)	41, 56, 381, 1095
BseMII	CTCAG	3 cut(s)	122, 390, 885
BseNI	ACTGG	2 cut(s)	29, 727
BseRI	GAGGAG	1 cut(s)	730
BseSI	GKGCMC	1 cut(s)	971
BseXI	GCAGC	2 cut(s)	161, 943
Bsh1285I	CGRYCG	1 cut(s)	1106
BshFI	GGCC	2 cut(s)	208, 969
BsiEI	CGRYCG	1 cut(s)	1106
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	971
BslFI	GGGAC	1 cut(s)	541
BslI	CCNNNNNNNGG	4 cut(s)	41, 56, 381, 1095
BsmAI	GTCTC	3 cut(s)	30, 652, 768
BsmFI	GGGAC	1 cut(s)	541
BsnI	GGCC	2 cut(s)	208, 969
Bso31I	GGTCTC	1 cut(s)	652
BsoBI	CYCGRG	1 cut(s)	36
Bsp120I	GGGCCC	1 cut(s)	967
Bsp1286I	GDGCHC	1 cut(s)	971
Bsp1407I	TGTACA	1 cut(s)	732
Bsp143I	GATC	3 cut(s)	726, 877, 1084
BspACI	CCGC	2 cut(s)	50, 907
BspANI	GGCC	2 cut(s)	208, 969
BspCNI	CTCAG	3 cut(s)	121, 389, 884
BspLI	GGNNCC	2 cut(s)	969, 1086
BspPI	GGATC	3 cut(s)	734, 1079, 1092
BspTNI	GGTCTC	1 cut(s)	652
BsrGI	TGTACA	1 cut(s)	732
BsrI	ACTGG	2 cut(s)	29, 727
BssECI	CCNNGG	4 cut(s)	144, 194, 228, 1226
BssMI	GATC	3 cut(s)	726, 877, 1084
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	3 cut(s)	144, 194, 228
Bst2UI	CCWGG	2 cut(s)	1228, 1264
Bst4CI	ACNGT	1 cut(s)	827
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	732
BstBAI	YACGTR	1 cut(s)	634
BstC8I	GCNNGC	1 cut(s)	954
BstDEI	CTNAG	3 cut(s)	108, 376, 871
BstEII	GGTNACC	1 cut(s)	1179
BstENI	CCTNNNNNAGG	1 cut(s)	39
BstF5I	GGATG	4 cut(s)	122, 140, 595, 1004
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	2 cut(s)	253, 697
BstKTI	GATC	3 cut(s)	729, 880, 1087
BstMAI	GTCTC	3 cut(s)	30, 652, 768
BstMBI	GATC	3 cut(s)	726, 877, 1084
BstMCI	CGRYCG	1 cut(s)	1106
BstMWI	GCNNNNNNNGC	2 cut(s)	895, 904
BstNI	CCWGG	2 cut(s)	1228, 1264
BstPI	GGTNACC	1 cut(s)	1179
BstSCI	CCNGG	3 cut(s)	969, 1226, 1262
BstSFI	CTRYAG	1 cut(s)	960
BstSLI	GKGCMC	1 cut(s)	971
BstV1I	GCAGC	2 cut(s)	161, 943
BstX2I	RGATCY	2 cut(s)	877, 1084
BstXI	CCANNNNNNTGG	1 cut(s)	663
BstYI	RGATCY	2 cut(s)	877, 1084
BsuI	GTATCC	2 cut(s)	382, 418
BsuRI	GGCC	2 cut(s)	208, 969
BtsCI	GGATG	4 cut(s)	122, 140, 595, 1004
BtsIMutI	CAGTG	2 cut(s)	36, 762
Cac8I	GCNNGC	1 cut(s)	954
CfoI	GCGC	2 cut(s)	253, 697
Cfr13I	GGNCC	2 cut(s)	967, 968
Csp6I	GTAC	2 cut(s)	105, 733
CviAII	CATG	5 cut(s)	277, 337, 398, 730, 918
CviJI	RGCY	9 cut(s)	152, 170, 208, 299, 565, 608, 956, 969, 1129
CviKI_1	RGCY	9 cut(s)	152, 170, 208, 299, 565, 608, 956, 969, 1129
CviQI	GTAC	2 cut(s)	105, 733
DdeI	CTNAG	3 cut(s)	108, 376, 871
DpnI	GATC	3 cut(s)	728, 879, 1086
DpnII	GATC	3 cut(s)	726, 877, 1084
Eco130I	CCWWGG	3 cut(s)	144, 194, 228
Eco147I	AGGCCT	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	971
Eco31I	GGTCTC	1 cut(s)	652
Eco72I	CACGTG	1 cut(s)	634
Eco88I	CYCGRG	1 cut(s)	36
Eco91I	GGTNACC	1 cut(s)	1179
EcoNI	CCTNNNNNAGG	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	967
EcoO65I	GGTNACC	1 cut(s)	1179
EcoRI	GAATTC	1 cut(s)	45
EcoRII	CCWGG	2 cut(s)	1226, 1262
EcoT14I	CCWWGG	3 cut(s)	144, 194, 228
EcoT38I	GRGCYC	1 cut(s)	971
ErhI	CCWWGG	3 cut(s)	144, 194, 228
FaeI	CATG	5 cut(s)	280, 340, 401, 733, 921
FaqI	GGGAC	1 cut(s)	541
FatI	CATG	5 cut(s)	276, 336, 397, 729, 917
Fnu4HI	GCNGC	2 cut(s)	150, 957
FokI	GGATG	4 cut(s)	109, 127, 582, 1011
FriOI	GRGCYC	1 cut(s)	971
Fsp4HI	GCNGC	2 cut(s)	150, 957
FspBI	CTAG	1 cut(s)	204
FspI	TGCGCA	1 cut(s)	696
GlaI	GCGC	2 cut(s)	252, 696
GluI	GCNGC	2 cut(s)	150, 957
GsuI	CTGGAG	1 cut(s)	12
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	2 cut(s)	208, 969
HapII	CCGG	1 cut(s)	971
HhaI	GCGC	2 cut(s)	253, 697
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	280, 340, 401, 733, 921
Hin6I	GCGC	2 cut(s)	251, 695
HinP1I	GCGC	2 cut(s)	251, 695
HindIII	AAGCTT	2 cut(s)	168, 563
HpaII	CCGG	1 cut(s)	971
HphI	GGTGA	2 cut(s)	642, 815
Hpy188I	TCNGA	6 cut(s)	111, 570, 792, 874, 998, 1124
HpyAV	CCTTC	3 cut(s)	240, 488, 1072
HpyCH4III	ACNGT	1 cut(s)	827
HpyCH4IV	ACGT	2 cut(s)	633, 798
HpyCH4V	TGCA	9 cut(s)	311, 445, 520, 619, 803, 851, 952, 1030, 1257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	895, 904
HpyF3I	CTNAG	3 cut(s)	108, 376, 871
HpySE526I	ACGT	2 cut(s)	633, 798
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	280, 340, 401, 733, 921
HspAI	GCGC	2 cut(s)	251, 695
Kzo9I	GATC	3 cut(s)	726, 877, 1084
Lsp1109I	GCAGC	2 cut(s)	161, 943
LweI	GCATC	5 cut(s)	320, 355, 628, 1108, 1212
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	2 cut(s)	633, 798
MaeIII	GTNAC	7 cut(s)	393, 418, 454, 465, 577, 941, 1179
MalI	GATC	3 cut(s)	728, 879, 1086
MboI	GATC	3 cut(s)	726, 877, 1084
MboII	GAAGA	6 cut(s)	27, 256, 460, 887, 1035, 1174
MflI	RGATCY	2 cut(s)	877, 1084
MhlI	GDGCHC	1 cut(s)	971
MluCI	AATT	2 cut(s)	45, 641
MlyI	GAGTC	4 cut(s)	473, 563, 574, 1102
MmeI	TCCRAC	1 cut(s)	608
MnlI	CCTC	9 cut(s)	45, 385, 663, 694, 708, 850, 888, 958, 1169
MseI	TTAA	4 cut(s)	507, 638, 885, 1233
MslI	CAYNNNNRTG	3 cut(s)	402, 661, 1220
MspA1I	CMGCKG	1 cut(s)	52
MspI	CCGG	1 cut(s)	971
MspR9I	CCNGG	3 cut(s)	971, 1228, 1264
MvaI	CCWGG	2 cut(s)	1228, 1264
MwoI	GCNNNNNNNGC	2 cut(s)	895, 904
NciI	CCSGG	1 cut(s)	971
NdeII	GATC	3 cut(s)	726, 877, 1084
NlaIII	CATG	5 cut(s)	280, 340, 401, 733, 921
NlaIV	GGNNCC	2 cut(s)	969, 1086
NmuCI	GTSAC	2 cut(s)	465, 577
NsbI	TGCGCA	1 cut(s)	696
PaeR7I	CTCGAG	1 cut(s)	36
PceI	AGGCCT	1 cut(s)	208
PfeI	GAWTC	6 cut(s)	132, 161, 523, 837, 1013, 1035
PflMI	CCANNNNNTGG	1 cut(s)	1095
PkrI	GCNGC	2 cut(s)	151, 958
PleI	GAGTC	4 cut(s)	472, 562, 574, 1102
PmaCI	CACGTG	1 cut(s)	634
PmlI	CACGTG	1 cut(s)	634
PpsI	GAGTC	4 cut(s)	472, 562, 574, 1102
Ppu21I	YACGTR	1 cut(s)	634
Psp1406I	AACGTT	1 cut(s)	798
Psp6I	CCWGG	2 cut(s)	1226, 1262
PspCI	CACGTG	1 cut(s)	634
PspEI	GGTNACC	1 cut(s)	1179
PspGI	CCWGG	2 cut(s)	1226, 1262
PspN4I	GGNNCC	2 cut(s)	969, 1086
PspOMI	GGGCCC	1 cut(s)	967
PspPI	GGNCC	2 cut(s)	967, 968
PspXI	VCTCGAGB	1 cut(s)	36
PsrI	GAACNNNNNNTAC	2 cut(s)	1183, 1215
PsuI	RGATCY	2 cut(s)	877, 1084
RsaI	GTAC	2 cut(s)	106, 734
RsaNI	GTAC	2 cut(s)	105, 733
RseI	CAYNNNNRTG	3 cut(s)	402, 661, 1220
SaqAI	TTAA	4 cut(s)	507, 638, 885, 1233
SatI	GCNGC	2 cut(s)	150, 957
Sau3AI	GATC	3 cut(s)	726, 877, 1084
Sau96I	GGNCC	2 cut(s)	967, 968
SchI	GAGTC	4 cut(s)	473, 563, 574, 1102
ScrFI	CCNGG	3 cut(s)	971, 1228, 1264
SduI	GDGCHC	1 cut(s)	971
SfaNI	GCATC	5 cut(s)	320, 355, 628, 1108, 1212
SfcI	CTRYAG	1 cut(s)	960
Sfr274I	CTCGAG	1 cut(s)	36
SlaI	CTCGAG	1 cut(s)	36
SmiMI	CAYNNNNRTG	3 cut(s)	402, 661, 1220
SmlI	CTYRAG	4 cut(s)	36, 165, 712, 987
SmoI	CTYRAG	4 cut(s)	36, 165, 712, 987
Sse9I	AATT	2 cut(s)	45, 641
SseBI	AGGCCT	1 cut(s)	208
SsiI	CCGC	2 cut(s)	50, 907
SspMI	CTAG	1 cut(s)	204
StuI	AGGCCT	1 cut(s)	208
StyD4I	CCNGG	3 cut(s)	969, 1226, 1262
StyI	CCWWGG	3 cut(s)	144, 194, 228
TaaI	ACNGT	1 cut(s)	827
TaiI	ACGT	2 cut(s)	636, 801
TaqI	TCGA	4 cut(s)	37, 1102, 1174, 1189
TaqII	GACCGA	1 cut(s)	1120
TasI	AATT	2 cut(s)	45, 641
TatI	WGTACW	2 cut(s)	104, 732
TfiI	GAWTC	6 cut(s)	132, 161, 523, 837, 1013, 1035
Tru1I	TTAA	4 cut(s)	507, 638, 885, 1233
Tru9I	TTAA	4 cut(s)	507, 638, 885, 1233
TscAI	CASTG	2 cut(s)	36, 769
TseFI	GTSAC	2 cut(s)	465, 577
TseI	GCWGC	2 cut(s)	149, 956
Tsp45I	GTSAC	2 cut(s)	465, 577
TspDTI	ATGAA	6 cut(s)	144, 256, 265, 377, 776, 1175
TspGWI	ACGGA	1 cut(s)	588
TspRI	CASTG	2 cut(s)	36, 769
Van91I	CCANNNNNTGG	1 cut(s)	1095
XagI	CCTNNNNNAGG	1 cut(s)	39
XapI	RAATTY	1 cut(s)	45
XhoI	CTCGAG	1 cut(s)	36
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.