Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001809.1

Orthogroup ID

OG0015559

Physical Location & Seq

Genomic Coordinates Forward (+)

299398 .. 301606

Gene Structure 2209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001809.1_g000057.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

atggcttctattagaagaacattgtctccagtgcctcgagcaggaattccactaaatggggaagtccattcagttgcttctccattgtccaagtcctcatcttgtactcagaactatccatcatccaatggattcttatcatctttggctgcttcattggattctcaagcgtttgttctcggtgttttttcaccgaggtcttctaggccttttgagaaatcaaaacccaaggggcaagtctggagaagggtgctttcccatttctttatttgtttcatgcttggagtctttattggggctacaccttttgcgtcgatgactttatccacaaatctcatgtcaaagcatcaagacttatcctttgaaatgatatcctcagtcgggtttcatcagttacatgggagtgtatccagaaatgtgacaccattagatggtgggaaaatgcagaagaatgttacaatggagtcacaagtcaaggagtggggaccaacagaaggcatcttattaaaaactaatatgcagaaccaatcactcattcaagaagcaggtttggagttccgaaagcttttgataatcgtgactccaacacatgctcatccatttcaggcctataatctgaatcgtttggcacacacgttaaaattagtctcacctccattgttatggatcgttgtggagatgacgtcccaatctgcagaaacaactgacatgttgaggagaactgggattatgtacagacatcttgtgtgcgagaaaaatcttactgatgtaagagacagaagtgttcatcaaagaaacgttgcacttgttcacattgaaactcaccgtcttgatggaatcatctactttgcagatgaggacaacatctactcaagtgatctttttgagcaaatgaggcacattaggcggtttggaacatggtcagttgccaaaataacgggtaacaaaatgcaagctgctatagagggccccgatttgccttcaatagtactatactctgggatcccaaaaggtggcatcgaccgactcttgaacctattaggcagcttgacacaggcaacgatggttttcaggcgagcacatttattgaacaagttgtggaagatgaaagtcaaatggaaggtttgctgcaagattgctcgaggatcatggtttggcatcgtcatcattgaacaagttgtggaagatgaaagtcaaatggaaggtttgctgcaagattgctcgaggatcatggtttggcatcgtcatcatgaatcagttaatgccttctatcctcacaagtggttcaagaagaataatctagatgtcattgcttcacttacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009832 GO:0009834 GO:0009987 GO:0010208 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0010584 GO:0010927 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0022607 GO:0030198 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0085029 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_43

Protein Analysis

441

Amino Acids

49.8

Weight (kDa)

9.62

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015559)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35840 FvH4_2g35840 FvH4_2g35840
malus_domestica	MD08G1115800.v1.1
prunus_persica	Prupe.1G450500_v2.0.a1 Prupe.1G450500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0305981
rosa_laevigata	RLG00000010840
rosa_multiflora	Rmu_sc0001809.1_g000057
rosa_roxburghii	Rroxscaffold_7G00162170
rosa_rugosa	Rorug06G0345800
rosa_samantha	Rh6AG457700 Rh6BG443400 Rh6CG471800 Rh6DG458200
rosa_wichuraiana	Rw6G039930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	686
Acc36I	ACCTGC	1 cut(s)	536
AccB7I	CCANNNNNTGG	3 cut(s)	56, 431, 1013
AciI	CCGC	1 cut(s)	907
AclI	AACGTT	1 cut(s)	798
AclWI	GGATC	5 cut(s)	674, 997, 1010, 1153, 1235
AcsI	RAATTY	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	683
AfaI	GTAC	3 cut(s)	106, 734, 990
AfiI	CCNNNNNNNGG	6 cut(s)	41, 56, 381, 431, 494, 1013
AflIII	ACRYGT	2 cut(s)	633, 708
AgsI	TTSAA	8 cut(s)	365, 539, 818, 984, 1033, 1090, 1172, 1288
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AloI	GAACNNNNNNTCC	2 cut(s)	10, 42
AluBI	AGCT	3 cut(s)	565, 956, 1047
AluI	AGCT	3 cut(s)	565, 956, 1047
Alw21I	GWGCWC	1 cut(s)	1081
Alw26I	GTCTC	3 cut(s)	30, 652, 768
AlwI	GGATC	5 cut(s)	674, 997, 1010, 1153, 1235
Ama87I	CYCGRG	3 cut(s)	36, 1140, 1222
AoxI	GGCC	3 cut(s)	206, 606, 967
ApaI	GGGCCC	1 cut(s)	971
ApeKI	GCWGC	5 cut(s)	149, 956, 1044, 1128, 1210
ApoI	RAATTY	1 cut(s)	45
ArsI	GACNNNNNNTTYG	4 cut(s)	323, 344, 355, 376
AspS9I	GGNCC	3 cut(s)	485, 967, 968
AsuHPI	GGTGA	3 cut(s)	183, 642, 815
AvaI	CYCGRG	3 cut(s)	36, 1140, 1222
AvaII	GGWCC	1 cut(s)	485
BaeGI	GKGCMC	1 cut(s)	971
BamHI	GGATCC	1 cut(s)	1002
BanII	GRGCYC	1 cut(s)	971
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	1081
BbvI	GCAGC	5 cut(s)	136, 943, 1056, 1115, 1197
BccI	CCATC	4 cut(s)	127, 425, 827, 1057
BciVI	GTATCC	1 cut(s)	418
BcoDI	GTCTC	3 cut(s)	30, 652, 768
BfaI	CTAG	2 cut(s)	204, 1301
BfmI	CTRYAG	2 cut(s)	693, 960
BfuAI	ACCTGC	1 cut(s)	536
BfuI	GTATCC	1 cut(s)	418
BisI	GCNGC	5 cut(s)	150, 957, 1045, 1129, 1211
BlsI	GCNGC	5 cut(s)	151, 958, 1046, 1130, 1212
BmcAI	AGTACT	1 cut(s)	990
Bme18I	GGWCC	1 cut(s)	485
BmeT110I	CYCGRG	3 cut(s)	36, 1140, 1222
BmgT120I	GGNCC	3 cut(s)	485, 967, 968
BmiI	GGNNCC	4 cut(s)	486, 969, 970, 1004
BmrI	ACTGGG	1 cut(s)	732
BmsI	GCATC	5 cut(s)	355, 507, 1026, 1167, 1249
BmuI	ACTGGG	1 cut(s)	732
BpiI	GAAGAC	1 cut(s)	192
BpmI	CTGGAG	2 cut(s)	12, 262
BpuEI	CTTGAG	2 cut(s)	150, 856
BsaBI	GATNNNNATC	1 cut(s)	136
BsaHI	GRCGYC	1 cut(s)	683
BsaJI	CCNNGG	2 cut(s)	194, 228
BsaXI	ACNNNNNCTCC	4 cut(s)	10, 40, 668, 698
Bsc4I	CCNNNNNNNGG	6 cut(s)	41, 56, 381, 431, 494, 1013
Bse1I	ACTGG	2 cut(s)	29, 727
Bse3DI	GCAATG	1 cut(s)	1308
Bse8I	GATNNNNATC	1 cut(s)	136
BseDI	CCNNGG	2 cut(s)	194, 228
BseGI	GGATG	2 cut(s)	122, 595
BseJI	GATNNNNATC	1 cut(s)	136
BseLI	CCNNNNNNNGG	6 cut(s)	41, 56, 381, 431, 494, 1013
BseMI	GCAATG	1 cut(s)	1308
BseMII	CTCAG	2 cut(s)	122, 390
BseNI	ACTGG	2 cut(s)	29, 727
BseRI	GAGGAG	1 cut(s)	730
BseSI	GKGCMC	1 cut(s)	971
BseXI	GCAGC	5 cut(s)	136, 943, 1056, 1115, 1197
Bsh1285I	CGRYCG	1 cut(s)	1024
BshFI	GGCC	3 cut(s)	208, 608, 969
BsiEI	CGRYCG	1 cut(s)	1024
BsiHKAI	GWGCWC	1 cut(s)	1081
BsiHKCI	CYCGRG	3 cut(s)	36, 1140, 1222
BslFI	GGGAC	2 cut(s)	498, 670
BslI	CCNNNNNNNGG	6 cut(s)	41, 56, 381, 431, 494, 1013
BsmAI	GTCTC	3 cut(s)	30, 652, 768
BsmFI	GGGAC	2 cut(s)	498, 670
BsnI	GGCC	3 cut(s)	208, 608, 969
BsoBI	CYCGRG	3 cut(s)	36, 1140, 1222
Bsp120I	GGGCCC	1 cut(s)	967
Bsp1286I	GDGCHC	2 cut(s)	971, 1081
Bsp1407I	TGTACA	1 cut(s)	732
Bsp143I	GATC	5 cut(s)	666, 877, 1002, 1145, 1227
BspACI	CCGC	1 cut(s)	907
BspANI	GGCC	3 cut(s)	208, 608, 969
BspCNI	CTCAG	2 cut(s)	121, 389
BspHI	TCATGA	1 cut(s)	1249
BspLI	GGNNCC	4 cut(s)	486, 969, 970, 1004
BspMAI	CTGCAG	1 cut(s)	697
BspMI	ACCTGC	1 cut(s)	536
BspPI	GGATC	5 cut(s)	674, 997, 1010, 1153, 1235
BsrDI	GCAATG	1 cut(s)	1308
BsrGI	TGTACA	1 cut(s)	732
BsrI	ACTGG	2 cut(s)	29, 727
BssECI	CCNNGG	2 cut(s)	194, 228
BssMI	GATC	5 cut(s)	666, 877, 1002, 1145, 1227
BssNI	GRCGYC	1 cut(s)	683
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	827
BstACI	GRCGYC	1 cut(s)	683
BstAUI	TGTACA	1 cut(s)	732
BstC8I	GCNNGC	2 cut(s)	954, 1077
BstDEI	CTNAG	2 cut(s)	108, 376
BstENI	CCTNNNNNAGG	1 cut(s)	39
BstF5I	GGATG	2 cut(s)	122, 595
BstKTI	GATC	5 cut(s)	669, 880, 1005, 1148, 1230
BstMAI	GTCTC	3 cut(s)	30, 652, 768
BstMBI	GATC	5 cut(s)	666, 877, 1002, 1145, 1227
BstMCI	CGRYCG	1 cut(s)	1024
BstMWI	GCNNNNNNNGC	2 cut(s)	895, 904
BstNSI	RCATGY	2 cut(s)	593, 712
BstSFI	CTRYAG	2 cut(s)	693, 960
BstSLI	GKGCMC	1 cut(s)	971
BstV1I	GCAGC	5 cut(s)	136, 943, 1056, 1115, 1197
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	1002
BstXI	CCANNNNNNTGG	1 cut(s)	663
BstYI	RGATCY	1 cut(s)	1002
BsuI	GTATCC	1 cut(s)	418
BsuRI	GGCC	3 cut(s)	208, 608, 969
BtsCI	GGATG	2 cut(s)	122, 595
BtsIMutI	CAGTG	1 cut(s)	36
BveI	ACCTGC	1 cut(s)	536
Cac8I	GCNNGC	2 cut(s)	954, 1077
CciI	TCATGA	1 cut(s)	1249
Cfr13I	GGNCC	3 cut(s)	485, 967, 968
CseI	GACGC	1 cut(s)	300
Csp6I	GTAC	3 cut(s)	105, 733, 989
CviAII	CATG	9 cut(s)	277, 337, 398, 590, 709, 918, 1149, 1231, 1250
CviJI	RGCY	9 cut(s)	5, 149, 208, 299, 565, 608, 956, 969, 1047
CviKI_1	RGCY	9 cut(s)	5, 149, 208, 299, 565, 608, 956, 969, 1047
CviQI	GTAC	3 cut(s)	105, 733, 989
DdeI	CTNAG	2 cut(s)	108, 376
DpnI	GATC	5 cut(s)	668, 879, 1004, 1147, 1229
DpnII	GATC	5 cut(s)	666, 877, 1002, 1145, 1227
Eco130I	CCWWGG	1 cut(s)	228
Eco147I	AGGCCT	2 cut(s)	208, 608
Eco24I	GRGCYC	1 cut(s)	971
Eco32I	GATATC	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	485
Eco88I	CYCGRG	3 cut(s)	36, 1140, 1222
EcoNI	CCTNNNNNAGG	1 cut(s)	39
EcoO109I	RGGNCCY	2 cut(s)	967, 968
EcoRI	GAATTC	1 cut(s)	45
EcoRV	GATATC	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	971
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	9 cut(s)	280, 340, 401, 593, 712, 921, 1152, 1234, 1253
FaqI	GGGAC	2 cut(s)	498, 670
FatI	CATG	9 cut(s)	276, 336, 397, 589, 708, 917, 1148, 1230, 1249
Fnu4HI	GCNGC	5 cut(s)	150, 957, 1045, 1129, 1211
FokI	GGATG	2 cut(s)	109, 582
FriOI	GRGCYC	1 cut(s)	971
Fsp4HI	GCNGC	5 cut(s)	150, 957, 1045, 1129, 1211
FspBI	CTAG	2 cut(s)	204, 1301
GluI	GCNGC	5 cut(s)	150, 957, 1045, 1129, 1211
GsuI	CTGGAG	2 cut(s)	12, 262
HaeIII	GGCC	3 cut(s)	208, 608, 969
HgaI	GACGC	1 cut(s)	300
Hin1I	GRCGYC	1 cut(s)	683
Hin1II	CATG	9 cut(s)	280, 340, 401, 593, 712, 921, 1152, 1234, 1253
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	9 cut(s)	132, 161, 285, 464, 580, 619, 837, 1026, 1253
HphI	GGTGA	3 cut(s)	183, 642, 815
Hpy166II	GTNNAC	1 cut(s)	811
Hpy188I	TCNGA	3 cut(s)	111, 560, 618
Hpy8I	GTNNAC	1 cut(s)	811
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	6 cut(s)	240, 488, 990, 1114, 1196, 1276
HpyCH4III	ACNGT	1 cut(s)	827
HpyCH4IV	ACGT	3 cut(s)	635, 683, 798
HpyCH4V	TGCA	8 cut(s)	445, 520, 695, 803, 851, 952, 1131, 1213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	895, 904
HpyF3I	CTNAG	2 cut(s)	108, 376
HpySE526I	ACGT	3 cut(s)	635, 683, 798
Hsp92I	GRCGYC	1 cut(s)	683
Hsp92II	CATG	9 cut(s)	280, 340, 401, 593, 712, 921, 1152, 1234, 1253
Kzo9I	GATC	5 cut(s)	666, 877, 1002, 1145, 1227
Lsp1109I	GCAGC	5 cut(s)	136, 943, 1056, 1115, 1197
LweI	GCATC	5 cut(s)	355, 507, 1026, 1167, 1249
MaeI	CTAG	2 cut(s)	204, 1301
MaeII	ACGT	3 cut(s)	635, 683, 798
MaeIII	GTNAC	6 cut(s)	393, 418, 454, 465, 577, 941
MalI	GATC	5 cut(s)	668, 879, 1004, 1147, 1229
MboI	GATC	5 cut(s)	666, 877, 1002, 1145, 1227
MboII	GAAGA	6 cut(s)	27, 192, 460, 1114, 1196, 1303
MflI	RGATCY	1 cut(s)	1002
MhlI	GDGCHC	2 cut(s)	971, 1081
MluCI	AATT	2 cut(s)	45, 641
MlyI	GAGTC	4 cut(s)	294, 473, 574, 1020
MmeI	TCCRAC	1 cut(s)	608
MseI	TTAA	3 cut(s)	506, 638, 1260
MslI	CAYNNNNRTG	2 cut(s)	402, 661
MwoI	GCNNNNNNNGC	2 cut(s)	895, 904
NdeII	GATC	5 cut(s)	666, 877, 1002, 1145, 1227
NlaIII	CATG	9 cut(s)	280, 340, 401, 593, 712, 921, 1152, 1234, 1253
NlaIV	GGNNCC	4 cut(s)	486, 969, 970, 1004
NmuCI	GTSAC	3 cut(s)	418, 465, 577
NspI	RCATGY	2 cut(s)	593, 712
PaeR7I	CTCGAG	3 cut(s)	36, 1140, 1222
PagI	TCATGA	1 cut(s)	1249
PceI	AGGCCT	2 cut(s)	208, 608
PciI	ACATGT	1 cut(s)	708
PfeI	GAWTC	5 cut(s)	132, 161, 619, 837, 1253
PflMI	CCANNNNNTGG	3 cut(s)	56, 431, 1013
PkrI	GCNGC	5 cut(s)	151, 958, 1046, 1130, 1212
PleI	GAGTC	4 cut(s)	293, 472, 574, 1020
PpsI	GAGTC	4 cut(s)	293, 472, 574, 1020
PscI	ACATGT	1 cut(s)	708
Psp1406I	AACGTT	1 cut(s)	798
PspN4I	GGNNCC	4 cut(s)	486, 969, 970, 1004
PspOMI	GGGCCC	1 cut(s)	967
PspPI	GGNCC	3 cut(s)	485, 967, 968
PspXI	VCTCGAGB	3 cut(s)	36, 1140, 1222
PstI	CTGCAG	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	1002
RsaI	GTAC	3 cut(s)	106, 734, 990
RsaNI	GTAC	3 cut(s)	105, 733, 989
RseI	CAYNNNNRTG	2 cut(s)	402, 661
SaqAI	TTAA	3 cut(s)	506, 638, 1260
SatI	GCNGC	5 cut(s)	150, 957, 1045, 1129, 1211
Sau3AI	GATC	5 cut(s)	666, 877, 1002, 1145, 1227
Sau96I	GGNCC	3 cut(s)	485, 967, 968
ScaI	AGTACT	1 cut(s)	990
SchI	GAGTC	4 cut(s)	294, 473, 574, 1020
SduI	GDGCHC	2 cut(s)	971, 1081
SfaNI	GCATC	5 cut(s)	355, 507, 1026, 1167, 1249
SfcI	CTRYAG	2 cut(s)	693, 960
Sfr274I	CTCGAG	3 cut(s)	36, 1140, 1222
SinI	GGWCC	1 cut(s)	485
SlaI	CTCGAG	3 cut(s)	36, 1140, 1222
SmiMI	CAYNNNNRTG	2 cut(s)	402, 661
SmlI	CTYRAG	5 cut(s)	36, 165, 871, 1140, 1222
SmoI	CTYRAG	5 cut(s)	36, 165, 871, 1140, 1222
Sse9I	AATT	2 cut(s)	45, 641
SseBI	AGGCCT	2 cut(s)	208, 608
SsiI	CCGC	1 cut(s)	907
SspMI	CTAG	2 cut(s)	204, 1301
StuI	AGGCCT	2 cut(s)	208, 608
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	827
TaiI	ACGT	3 cut(s)	638, 686, 801
TaqI	TCGA	5 cut(s)	37, 314, 1020, 1141, 1223
TaqII	GACCGA	1 cut(s)	1038
TasI	AATT	2 cut(s)	45, 641
TatI	WGTACW	3 cut(s)	104, 732, 988
TfiI	GAWTC	5 cut(s)	132, 161, 619, 837, 1253
Tru1I	TTAA	3 cut(s)	506, 638, 1260
Tru9I	TTAA	3 cut(s)	506, 638, 1260
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	3 cut(s)	418, 465, 577
TseI	GCWGC	5 cut(s)	149, 956, 1044, 1128, 1210
Tsp45I	GTSAC	3 cut(s)	418, 465, 577
TspDTI	ATGAA	7 cut(s)	144, 265, 377, 776, 1121, 1203, 1266
TspRI	CASTG	1 cut(s)	36
Van91I	CCANNNNNTGG	3 cut(s)	56, 431, 1013
VpaK11BI	GGWCC	1 cut(s)	485
XagI	CCTNNNNNAGG	1 cut(s)	39
XapI	RAATTY	1 cut(s)	45
XbaI	TCTAGA	1 cut(s)	1300
XceI	RCATGY	2 cut(s)	593, 712
XhoI	CTCGAG	3 cut(s)	36, 1140, 1222
XspI	CTAG	2 cut(s)	204, 1301
ZraI	GACGTC	1 cut(s)	684
ZrmI	AGTACT	1 cut(s)	990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.