Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0015559

Physical Location & Seq

Genomic Coordinates Reverse (-)

4789235 .. 4791389

Gene Structure 2155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00162170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCTTCTATTAGAAGAACATTGTCTCCAGTGCCTCGAGCAGGAATTCCACTAAATGGGGAAGTCCATTCAGTTGCTTCTCCACTGTCCAAGTCCTCATCTTGTACTCAGAACTATCCATCATCCAATGGATTCTTATCATCTTTGGCTGCTTCATTGGATTCTCAAGCGTTTGTTCTCGGTGTTTTTTCACCAAGGTCTTCTAGGCCTTTTGAGAAATCAAAACCCAAGGGGCAAGTTTGGAGAAGGGCACTTTCCCATTTCTTCATTTGTTTCATGCTTGGAGTCTTTATTGGGGCTACACCTTTTGCGTCAATGACTTTATCCACAAATCTCATGTCAACGCATCAGGACTTATCCTTTGAAATGATGTCCTCAGTCGGGTTTCATCAGTTGCATGGGAGTGTATCCAGAACTGTGACACCATTAGATAGCAGGGAAATGCAGAAGAATGTTACAATGGAGTCACAAGTCAAGGAGTGGGAACCAACAGAAGGCATCCTATTAAAAACTAATATGCAGAACCAATCACTTATTCAAGAAGCAGATATGGAGTTCAAAGCTTTTGATGAGGACAACATCTACTCAAGTGATCTTTTTGAGCAAATGAGGCACATTAGGCGGTTTGGAACATGGTCAGTTGCCAAAATAACGGGTAACAAAATGCAAGCTGCTATAGAGGGCCCCGTTTGTAATGGAACTCAAGTAATTGGATGGCATGCAATTGAATCAAGTATAAGATTTCAGAGATTCTATGCTCAAATATCAGGATTTGCCTTCAATAGTACTATACTCTGGGATCCCAAAAGGTGGCATCGACCAACTCTGGAACCTATTAGGCAGCTTGACACAGGCAATGATGGTTTCCAGGTGAGCACATTTATTGAACAAGTTGTGGAAGATGAAAGTCAAATGGAAGTCCATATGGATGGCAAAGGTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009832 GO:0009834 GO:0009987 GO:0010208 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0010584 GO:0010927 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0022607 GO:0030198 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0085029 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_43

Protein Analysis

314

Amino Acids

35.26

Weight (kDa)

6.76

Isoelectric Point (pI)

55.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_43	PF03360	190 - 310	1.2e-29	Glycosyltransferase family 43

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015559)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35840 FvH4_2g35840 FvH4_2g35840
malus_domestica	MD08G1115800.v1.1
prunus_persica	Prupe.1G450500_v2.0.a1 Prupe.1G450500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0305981
rosa_laevigata	RLG00000010840
rosa_multiflora	Rmu_sc0001809.1_g000057
rosa_roxburghii	Rroxscaffold_7G00162170
rosa_rugosa	Rorug06G0345800
rosa_samantha	Rh6AG457700 Rh6BG443400 Rh6CG471800 Rh6DG458200
rosa_wichuraiana	Rw6G039930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	56, 810
AciI	CCGC	1 cut(s)	622
AclWI	GGATC	2 cut(s)	794, 807
AcsI	RAATTY	1 cut(s)	45
AfaI	GTAC	2 cut(s)	106, 787
AfiI	CCNNNNNNNGG	5 cut(s)	41, 56, 381, 494, 810
AgsI	TTSAA	6 cut(s)	365, 539, 559, 728, 781, 887
AjnI	CCWGG	1 cut(s)	867
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AloI	GAACNNNNNNTCC	2 cut(s)	10, 42
AluBI	AGCT	3 cut(s)	563, 671, 844
AluI	AGCT	3 cut(s)	563, 671, 844
Alw21I	GWGCWC	1 cut(s)	878
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	2 cut(s)	794, 807
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	2 cut(s)	206, 682
ApaI	GGGCCC	1 cut(s)	686
ApeKI	GCWGC	3 cut(s)	149, 671, 841
ApoI	RAATTY	1 cut(s)	45
ArsI	GACNNNNNNTTYG	4 cut(s)	323, 344, 355, 376
AspS9I	GGNCC	2 cut(s)	682, 683
AsuHPI	GGTGA	2 cut(s)	183, 883
AvaI	CYCGRG	1 cut(s)	36
BaeGI	GKGCMC	2 cut(s)	253, 686
BamHI	GGATCC	1 cut(s)	799
BanII	GRGCYC	1 cut(s)	686
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	878
BbvI	GCAGC	3 cut(s)	136, 658, 853
BccI	CCATC	4 cut(s)	127, 708, 854, 923
BciT130I	CCWGG	1 cut(s)	869
BciVI	GTATCC	1 cut(s)	418
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	1 cut(s)	675
BfuI	GTATCC	1 cut(s)	418
BisI	GCNGC	3 cut(s)	150, 672, 842
BlsI	GCNGC	3 cut(s)	151, 673, 843
BmcAI	AGTACT	1 cut(s)	787
Bme1390I	CCNGG	1 cut(s)	869
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	682, 683
BmiI	GGNNCC	5 cut(s)	486, 684, 685, 801, 831
BmrFI	CCNGG	1 cut(s)	869
BmsI	GCATC	3 cut(s)	355, 507, 823
BpiI	GAAGAC	1 cut(s)	192
BpmI	CTGGAG	1 cut(s)	12
BpuEI	CTTGAG	3 cut(s)	150, 571, 687
BsaBI	GATNNNNATC	1 cut(s)	136
BsaJI	CCNNGG	2 cut(s)	194, 228
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	5 cut(s)	41, 56, 381, 494, 810
Bse1I	ACTGG	1 cut(s)	29
Bse3DI	GCAATG	1 cut(s)	862
Bse8I	GATNNNNATC	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	869
BseDI	CCNNGG	2 cut(s)	194, 228
BseGI	GGATG	4 cut(s)	122, 498, 719, 934
BseJI	GATNNNNATC	1 cut(s)	136
BseLI	CCNNNNNNNGG	5 cut(s)	41, 56, 381, 494, 810
BseMI	GCAATG	1 cut(s)	862
BseMII	CTCAG	2 cut(s)	122, 390
BseNI	ACTGG	1 cut(s)	29
BseSI	GKGCMC	2 cut(s)	253, 686
BseXI	GCAGC	3 cut(s)	136, 658, 853
BshFI	GGCC	2 cut(s)	208, 684
BsiHKAI	GWGCWC	1 cut(s)	878
BsiHKCI	CYCGRG	1 cut(s)	36
BslI	CCNNNNNNNGG	5 cut(s)	41, 56, 381, 494, 810
BsmAI	GTCTC	1 cut(s)	30
BsnI	GGCC	2 cut(s)	208, 684
BsoBI	CYCGRG	1 cut(s)	36
Bsp120I	GGGCCC	1 cut(s)	682
Bsp1286I	GDGCHC	3 cut(s)	253, 686, 878
Bsp143I	GATC	2 cut(s)	592, 799
BspACI	CCGC	1 cut(s)	622
BspANI	GGCC	2 cut(s)	208, 684
BspCNI	CTCAG	2 cut(s)	121, 389
BspLI	GGNNCC	5 cut(s)	486, 684, 685, 801, 831
BspPI	GGATC	2 cut(s)	794, 807
BsrDI	GCAATG	1 cut(s)	862
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	194, 228
BssMI	GATC	2 cut(s)	592, 799
BssT1I	CCWWGG	2 cut(s)	194, 228
Bst2UI	CCWGG	1 cut(s)	869
Bst4CI	ACNGT	2 cut(s)	87, 418
BstC8I	GCNNGC	2 cut(s)	669, 720
BstDEI	CTNAG	2 cut(s)	108, 376
BstENI	CCTNNNNNAGG	1 cut(s)	39
BstF5I	GGATG	4 cut(s)	122, 498, 719, 934
BstKTI	GATC	2 cut(s)	595, 802
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	2 cut(s)	592, 799
BstMWI	GCNNNNNNNGC	2 cut(s)	610, 619
BstNI	CCWGG	1 cut(s)	869
BstNSI	RCATGY	1 cut(s)	722
BstSCI	CCNGG	1 cut(s)	867
BstSFI	CTRYAG	1 cut(s)	675
BstSLI	GKGCMC	2 cut(s)	253, 686
BstV1I	GCAGC	3 cut(s)	136, 658, 853
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	799
BstXI	CCANNNNNNTGG	1 cut(s)	929
BstYI	RGATCY	1 cut(s)	799
BsuI	GTATCC	1 cut(s)	418
BsuRI	GGCC	2 cut(s)	208, 684
BtsCI	GGATG	4 cut(s)	122, 498, 719, 934
BtsIMutI	CAGTG	2 cut(s)	36, 83
Cac8I	GCNNGC	2 cut(s)	669, 720
Cfr13I	GGNCC	2 cut(s)	682, 683
CseI	GACGC	1 cut(s)	300
Csp6I	GTAC	2 cut(s)	105, 786
CviAII	CATG	5 cut(s)	277, 337, 398, 633, 719
CviJI	RGCY	8 cut(s)	5, 149, 208, 299, 563, 671, 684, 844
CviKI_1	RGCY	8 cut(s)	5, 149, 208, 299, 563, 671, 684, 844
CviQI	GTAC	2 cut(s)	105, 786
DdeI	CTNAG	2 cut(s)	108, 376
DpnI	GATC	2 cut(s)	594, 801
DpnII	GATC	2 cut(s)	592, 799
Eco130I	CCWWGG	2 cut(s)	194, 228
Eco147I	AGGCCT	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	686
Eco88I	CYCGRG	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	39
EcoO109I	RGGNCCY	2 cut(s)	682, 683
EcoRI	GAATTC	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	867
EcoT14I	CCWWGG	2 cut(s)	194, 228
EcoT38I	GRGCYC	1 cut(s)	686
ErhI	CCWWGG	2 cut(s)	194, 228
FaeI	CATG	5 cut(s)	280, 340, 401, 636, 722
FatI	CATG	5 cut(s)	276, 336, 397, 632, 718
FauNDI	CATATG	1 cut(s)	924
Fnu4HI	GCNGC	3 cut(s)	150, 672, 842
FokI	GGATG	4 cut(s)	109, 485, 726, 941
FriOI	GRGCYC	1 cut(s)	686
Fsp4HI	GCNGC	3 cut(s)	150, 672, 842
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	3 cut(s)	150, 672, 842
GsuI	CTGGAG	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	208, 684
HgaI	GACGC	1 cut(s)	300
Hin1II	CATG	5 cut(s)	280, 340, 401, 636, 722
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HindIII	AAGCTT	1 cut(s)	561
HinfI	GANTC	6 cut(s)	132, 161, 285, 464, 728, 750
HphI	GGTGA	2 cut(s)	183, 883
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	2 cut(s)	111, 747
Hpy188III	TCNNGA	5 cut(s)	350, 411, 539, 768, 827
Hpy8I	GTNNAC	1 cut(s)	342
HpyAV	CCTTC	3 cut(s)	240, 488, 787
HpyCH4III	ACNGT	2 cut(s)	87, 418
HpyCH4V	TGCA	5 cut(s)	397, 445, 520, 667, 722
HpyF10VI	GCNNNNNNNGC	2 cut(s)	610, 619
HpyF3I	CTNAG	2 cut(s)	108, 376
Hsp92II	CATG	5 cut(s)	280, 340, 401, 636, 722
Kzo9I	GATC	2 cut(s)	592, 799
Lsp1109I	GCAGC	3 cut(s)	136, 658, 853
LweI	GCATC	3 cut(s)	355, 507, 823
MaeI	CTAG	1 cut(s)	204
MaeIII	GTNAC	4 cut(s)	418, 454, 465, 656
MalI	GATC	2 cut(s)	594, 801
MboI	GATC	2 cut(s)	592, 799
MboII	GAAGA	5 cut(s)	27, 192, 256, 460, 911
MfeI	CAATTG	1 cut(s)	723
MflI	RGATCY	1 cut(s)	799
MhlI	GDGCHC	3 cut(s)	253, 686, 878
MluCI	AATT	3 cut(s)	45, 708, 723
MlyI	GAGTC	2 cut(s)	294, 473
MnlI	CCTC	6 cut(s)	45, 106, 385, 565, 603, 673
MseI	TTAA	1 cut(s)	506
MslI	CAYNNNNRTG	2 cut(s)	402, 927
MspR9I	CCNGG	1 cut(s)	869
MunI	CAATTG	1 cut(s)	723
MvaI	CCWGG	1 cut(s)	869
MwoI	GCNNNNNNNGC	2 cut(s)	610, 619
NdeI	CATATG	1 cut(s)	924
NdeII	GATC	2 cut(s)	592, 799
NlaIII	CATG	5 cut(s)	280, 340, 401, 636, 722
NlaIV	GGNNCC	5 cut(s)	486, 684, 685, 801, 831
NmuCI	GTSAC	2 cut(s)	418, 465
NspI	RCATGY	1 cut(s)	722
PaeI	GCATGC	1 cut(s)	722
PaeR7I	CTCGAG	1 cut(s)	36
PceI	AGGCCT	1 cut(s)	208
PfeI	GAWTC	4 cut(s)	132, 161, 728, 750
PflMI	CCANNNNNTGG	2 cut(s)	56, 810
PkrI	GCNGC	3 cut(s)	151, 673, 843
PleI	GAGTC	2 cut(s)	293, 472
PpsI	GAGTC	2 cut(s)	293, 472
Psp6I	CCWGG	1 cut(s)	867
PspGI	CCWGG	1 cut(s)	867
PspN4I	GGNNCC	5 cut(s)	486, 684, 685, 801, 831
PspOMI	GGGCCC	1 cut(s)	682
PspPI	GGNCC	2 cut(s)	682, 683
PspXI	VCTCGAGB	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	799
RsaI	GTAC	2 cut(s)	106, 787
RsaNI	GTAC	2 cut(s)	105, 786
RseI	CAYNNNNRTG	2 cut(s)	402, 927
SaqAI	TTAA	1 cut(s)	506
SatI	GCNGC	3 cut(s)	150, 672, 842
Sau3AI	GATC	2 cut(s)	592, 799
Sau96I	GGNCC	2 cut(s)	682, 683
ScaI	AGTACT	1 cut(s)	787
SchI	GAGTC	2 cut(s)	294, 473
ScrFI	CCNGG	1 cut(s)	869
SduI	GDGCHC	3 cut(s)	253, 686, 878
SetI	ASST	9 cut(s)	200, 307, 565, 673, 812, 835, 846, 873, 940
SfaNI	GCATC	3 cut(s)	355, 507, 823
SfcI	CTRYAG	1 cut(s)	675
Sfr274I	CTCGAG	1 cut(s)	36
SlaI	CTCGAG	1 cut(s)	36
SmiMI	CAYNNNNRTG	2 cut(s)	402, 927
SmlI	CTYRAG	4 cut(s)	36, 165, 586, 702
SmoI	CTYRAG	4 cut(s)	36, 165, 586, 702
SphI	GCATGC	1 cut(s)	722
Sse9I	AATT	3 cut(s)	45, 708, 723
SseBI	AGGCCT	1 cut(s)	208
SsiI	CCGC	1 cut(s)	622
SspMI	CTAG	1 cut(s)	204
StuI	AGGCCT	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	867
StyI	CCWWGG	2 cut(s)	194, 228
TaaI	ACNGT	2 cut(s)	87, 418
TaqI	TCGA	2 cut(s)	37, 817
TasI	AATT	3 cut(s)	45, 708, 723
TatI	WGTACW	2 cut(s)	104, 785
TfiI	GAWTC	4 cut(s)	132, 161, 728, 750
Tru1I	TTAA	1 cut(s)	506
Tru9I	TTAA	1 cut(s)	506
TscAI	CASTG	2 cut(s)	36, 90
TseFI	GTSAC	2 cut(s)	418, 465
TseI	GCWGC	3 cut(s)	149, 671, 841
Tsp45I	GTSAC	2 cut(s)	418, 465
TspDTI	ATGAA	5 cut(s)	144, 256, 265, 377, 918
TspRI	CASTG	2 cut(s)	36, 90
Van91I	CCANNNNNTGG	2 cut(s)	56, 810
XagI	CCTNNNNNAGG	1 cut(s)	39
XapI	RAATTY	1 cut(s)	45
XceI	RCATGY	1 cut(s)	722
XhoI	CTCGAG	1 cut(s)	36
XspI	CTAG	1 cut(s)	204
ZrmI	AGTACT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.