Rh6CG471800

Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
64199764 .. 64204198
4435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG471800.1

Sequence Viewer

Length: 1311 bp
ATGGCTTGTATTAGAAGAACATTGTCTCCAGTGCCTCGAGCAGGAATTCCACTAAATGGGGAAGTCCATTCAGTTGCTTCTCCATTGTCCAAGTCCTCATCTTGTACTCAGAACTATCCATCATCCAATGGATTCTTATCATCTTTGGCTGCTTCATTGGATTCTCAAGCGTTTGTTCTCGGTGTTTTTTCACCGAGGTCTTCTAGGCCTTTTGAGAAATCAAAACCCAAGGGGCAAGTTTGGAGAAGGGCGCTTTCCCATTTCTTTATTTGTTTCATGCTTGGAGTCTTTATTGGGGCTACACCTTTTGCGTCAATGACTTTATCCACAAATCTCATGTCAAAGCATCAGGACTTATCCTTTGAAATGATATCCTCAGTCGGGTTTCATCAGTTGCATGGGAGTGTATCCAGAAATGTGACACCATTAGATAGCAGGGAAATGCAGAAGAATGTTACAATGGAGTGGGAACCAACAGAAGGCATCCTATTAAAAACTAATATGCAGAACCAATCACTCATTCAAGAAGCAGATATGGAGTTCCGAAAGCTTTTGGTAATCGTGACTCCAACATATGCTCATCCATTTCGGGCCTATAATCTGAATCGTTTGGCGCACACGTTAAAATTAGTCTCACCTCCATTGTTATGGATCGTTGTGGAGATGACCTCCCAATCAGCAGAAACAACTGACATCTTGAGGAGAACTGGGATTATGTACAGACATCTTGTGTGCGAGAAAAATCTTACTGATGTAAGAGACAGAAGTGTTCATCAAAGAAACGTTGCACTTTTTCACATTGAAAGTCACCGTCTTGATGGAATCATCTACTTTGCAGATGAGGACAACATCTACTCAAGTGATCTTTTTGAGCAAATGAGGCACATTAGGCGGTTTGGAACATGGTCAGTTGCCAAAATAACAGGTAACAAAATGCAAGCTGCTATAGAGGGCCCCGTTTGTAATGGAACTCAAGTAATTGGATGGCATGCAATTGAATCAAGTATAAGATTTCAAAGATTCTATGCTCAAATATCAGGATTTGCCTTCAATAGTACTATACTCTGGGATCCCAAAAGGTGGCGTCGACCGACTCTTGAACCTATTAGGCAGCTTGACACAGGCAATGATGGTTTCCAGGTGAGCACATTTATTGAACAAGTTGTGGAAGATGAAAGTCAAATGGAAGGTTTGCTGCAAGATTGCTCGAGGATCATGGTTTGGCATCGTCATCATGAATCAGTTAATGCCTTCTATCCTCACAAGTGGTTCAAGAAGAATAATCTAGATGTCATTGCTTCACTTACGTGA

Protein Analysis

436

Amino Acids

49.75

Weight (kDa)

8.98

Isoelectric Point (pI)

56.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_43 PF03360 204 - 411 9.3e-68 Glycosyltransferase family 43
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015559)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 56, 1080
AccI GTMKAC 1 cut(s) 1087
AciI CCGC 1 cut(s) 892
AclI AACGTT 1 cut(s) 783
AclWI GGATC 4 cut(s) 659, 1064, 1077, 1220
AcsI RAATTY 1 cut(s) 45
AcyI GRCGYC 1 cut(s) 1084
AfaI GTAC 3 cut(s) 106, 719, 1057
AfiI CCNNNNNNNGG 5 cut(s) 41, 56, 381, 479, 1080
AflIII ACRYGT 1 cut(s) 618
AgsI TTSAA 9 cut(s) 365, 524, 803, 998, 1016, 1051, 1100, 1157, 1273
AjnI CCWGG 1 cut(s) 1137
AjuI GAANNNNNNNTTGG 2 cut(s) 504, 536
AleI CACNNNNGTG 1 cut(s) 1306
AloI GAACNNNNNNTCC 2 cut(s) 10, 42
AluBI AGCT 3 cut(s) 550, 941, 1114
AluI AGCT 3 cut(s) 550, 941, 1114
Alw21I GWGCWC 1 cut(s) 1148
Alw26I GTCTC 3 cut(s) 30, 637, 753
AlwI GGATC 4 cut(s) 659, 1064, 1077, 1220
Ama87I CYCGRG 2 cut(s) 36, 1207
AoxI GGCC 3 cut(s) 206, 591, 952
ApaI GGGCCC 1 cut(s) 956
ApeKI GCWGC 4 cut(s) 149, 941, 1111, 1195
ApoI RAATTY 1 cut(s) 45
ArsI GACNNNNNNTTYG 4 cut(s) 323, 344, 355, 376
AspLEI GCGC 2 cut(s) 253, 616
AspS9I GGNCC 3 cut(s) 591, 952, 953
AsuHPI GGTGA 4 cut(s) 183, 627, 800, 1153
AvaI CYCGRG 2 cut(s) 36, 1207
BaeGI GKGCMC 1 cut(s) 956
BamHI GGATCC 1 cut(s) 1069
BanII GRGCYC 1 cut(s) 956
BbsI GAAGAC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 1148
BbvI GCAGC 4 cut(s) 136, 928, 1123, 1182
BccI CCATC 4 cut(s) 127, 812, 978, 1124
BciT130I CCWGG 1 cut(s) 1139
BciVI GTATCC 1 cut(s) 418
BcoDI GTCTC 3 cut(s) 30, 637, 753
BfaI CTAG 2 cut(s) 204, 1286
BfmI CTRYAG 1 cut(s) 945
BfoI RGCGCY 1 cut(s) 254
BfuI GTATCC 1 cut(s) 418
BisI GCNGC 4 cut(s) 150, 942, 1112, 1196
BlsI GCNGC 4 cut(s) 151, 943, 1113, 1197
BmcAI AGTACT 1 cut(s) 1057
Bme1390I CCNGG 1 cut(s) 1139
BmeT110I CYCGRG 2 cut(s) 36, 1207
BmgT120I GGNCC 3 cut(s) 591, 952, 953
BmiI GGNNCC 4 cut(s) 471, 954, 955, 1071
BmrFI CCNGG 1 cut(s) 1139
BmrI ACTGGG 1 cut(s) 717
BmsI GCATC 3 cut(s) 355, 492, 1234
BmuI ACTGGG 1 cut(s) 717
BpiI GAAGAC 1 cut(s) 192
BplI GAGNNNNNCTC 2 cut(s) 653, 685
BpmI CTGGAG 1 cut(s) 12
BpuEI CTTGAG 4 cut(s) 150, 718, 841, 957
BsaAI YACGTR 1 cut(s) 1308
BsaBI GATNNNNATC 1 cut(s) 136
BsaHI GRCGYC 1 cut(s) 1084
BsaJI CCNNGG 2 cut(s) 194, 228
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 5 cut(s) 41, 56, 381, 479, 1080
Bse1I ACTGG 2 cut(s) 29, 712
Bse3DI GCAATG 2 cut(s) 1132, 1293
Bse8I GATNNNNATC 1 cut(s) 136
BseBI CCWGG 1 cut(s) 1139
BseDI CCNNGG 2 cut(s) 194, 228
BseGI GGATG 4 cut(s) 122, 483, 580, 989
BseJI GATNNNNATC 1 cut(s) 136
BseLI CCNNNNNNNGG 5 cut(s) 41, 56, 381, 479, 1080
BseMI GCAATG 2 cut(s) 1132, 1293
BseMII CTCAG 2 cut(s) 122, 390
BseNI ACTGG 2 cut(s) 29, 712
BseRI GAGGAG 1 cut(s) 715
BseSI GKGCMC 1 cut(s) 956
BseXI GCAGC 4 cut(s) 136, 928, 1123, 1182
Bsh1285I CGRYCG 1 cut(s) 1091
BshFI GGCC 3 cut(s) 208, 593, 954
BsiEI CGRYCG 1 cut(s) 1091
BsiHKAI GWGCWC 1 cut(s) 1148
BsiHKCI CYCGRG 2 cut(s) 36, 1207
BslI CCNNNNNNNGG 5 cut(s) 41, 56, 381, 479, 1080
BsmAI GTCTC 3 cut(s) 30, 637, 753
BsnI GGCC 3 cut(s) 208, 593, 954
BsoBI CYCGRG 2 cut(s) 36, 1207
Bsp120I GGGCCC 1 cut(s) 952
Bsp1286I GDGCHC 2 cut(s) 956, 1148
Bsp1407I TGTACA 1 cut(s) 717
Bsp143I GATC 4 cut(s) 651, 862, 1069, 1212
BspACI CCGC 1 cut(s) 892
BspANI GGCC 3 cut(s) 208, 593, 954
BspCNI CTCAG 2 cut(s) 121, 389
BspHI TCATGA 1 cut(s) 1234
BspLI GGNNCC 4 cut(s) 471, 954, 955, 1071
BspPI GGATC 4 cut(s) 659, 1064, 1077, 1220
BsrDI GCAATG 2 cut(s) 1132, 1293
BsrGI TGTACA 1 cut(s) 717
BsrI ACTGG 2 cut(s) 29, 712
BssECI CCNNGG 2 cut(s) 194, 228
BssMI GATC 4 cut(s) 651, 862, 1069, 1212
BssNI GRCGYC 1 cut(s) 1084
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 1139
Bst4CI ACNGT 1 cut(s) 812
BstACI GRCGYC 1 cut(s) 1084
BstAUI TGTACA 1 cut(s) 717
BstBAI YACGTR 1 cut(s) 1308
BstC8I GCNNGC 2 cut(s) 939, 990
BstDEI CTNAG 2 cut(s) 108, 376
BstENI CCTNNNNNAGG 1 cut(s) 39
BstF5I GGATG 4 cut(s) 122, 483, 580, 989
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 2 cut(s) 253, 616
BstKTI GATC 4 cut(s) 654, 865, 1072, 1215
BstMAI GTCTC 3 cut(s) 30, 637, 753
BstMBI GATC 4 cut(s) 651, 862, 1069, 1212
BstMCI CGRYCG 1 cut(s) 1091
BstMWI GCNNNNNNNGC 2 cut(s) 880, 889
BstNI CCWGG 1 cut(s) 1139
BstNSI RCATGY 1 cut(s) 992
BstSCI CCNGG 1 cut(s) 1137
BstSFI CTRYAG 1 cut(s) 945
BstSLI GKGCMC 1 cut(s) 956
BstV1I GCAGC 4 cut(s) 136, 928, 1123, 1182
BstV2I GAAGAC 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 1069
BstXI CCANNNNNNTGG 1 cut(s) 648
BstYI RGATCY 1 cut(s) 1069
BsuI GTATCC 1 cut(s) 418
BsuRI GGCC 3 cut(s) 208, 593, 954
BtsCI GGATG 4 cut(s) 122, 483, 580, 989
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 2 cut(s) 939, 990
CciI TCATGA 1 cut(s) 1234
CfoI GCGC 2 cut(s) 253, 616
Cfr13I GGNCC 3 cut(s) 591, 952, 953
CseI GACGC 2 cut(s) 300, 1073
Csp6I GTAC 3 cut(s) 105, 718, 1056
CviAII CATG 7 cut(s) 277, 337, 398, 903, 989, 1216, 1235
CviJI RGCY 9 cut(s) 5, 149, 208, 299, 550, 593, 941, 954, 1114
CviKI_1 RGCY 9 cut(s) 5, 149, 208, 299, 550, 593, 941, 954, 1114
CviQI GTAC 3 cut(s) 105, 718, 1056
DdeI CTNAG 2 cut(s) 108, 376
DpnI GATC 4 cut(s) 653, 864, 1071, 1214
DpnII GATC 4 cut(s) 651, 862, 1069, 1212
Eco130I CCWWGG 1 cut(s) 228
Eco147I AGGCCT 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 956
Eco32I GATATC 1 cut(s) 372
Eco88I CYCGRG 2 cut(s) 36, 1207
EcoNI CCTNNNNNAGG 1 cut(s) 39
EcoO109I RGGNCCY 2 cut(s) 952, 953
EcoRI GAATTC 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 1137
EcoRV GATATC 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 228
EcoT38I GRGCYC 1 cut(s) 956
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 7 cut(s) 280, 340, 401, 906, 992, 1219, 1238
FatI CATG 7 cut(s) 276, 336, 397, 902, 988, 1215, 1234
FauNDI CATATG 1 cut(s) 574
FblI GTMKAC 1 cut(s) 1087
Fnu4HI GCNGC 4 cut(s) 150, 942, 1112, 1196
FokI GGATG 4 cut(s) 109, 470, 567, 996
FriOI GRGCYC 1 cut(s) 956
Fsp4HI GCNGC 4 cut(s) 150, 942, 1112, 1196
FspBI CTAG 2 cut(s) 204, 1286
GlaI GCGC 2 cut(s) 252, 615
GluI GCNGC 4 cut(s) 150, 942, 1112, 1196
GsuI CTGGAG 1 cut(s) 12
HaeII RGCGCY 1 cut(s) 254
HaeIII GGCC 3 cut(s) 208, 593, 954
HgaI GACGC 2 cut(s) 300, 1073
HhaI GCGC 2 cut(s) 253, 616
Hin1I GRCGYC 1 cut(s) 1084
Hin1II CATG 7 cut(s) 280, 340, 401, 906, 992, 1219, 1238
Hin6I GCGC 2 cut(s) 251, 614
HinP1I GCGC 2 cut(s) 251, 614
HincII GTYRAC 1 cut(s) 1088
HindII GTYRAC 1 cut(s) 1088
HindIII AAGCTT 1 cut(s) 548
HphI GGTGA 4 cut(s) 183, 627, 800, 1153
Hpy166II GTNNAC 1 cut(s) 1088
Hpy188I TCNGA 3 cut(s) 111, 545, 603
Hpy8I GTNNAC 1 cut(s) 1088
Hpy99I CGWCG 1 cut(s) 1089
HpyAV CCTTC 5 cut(s) 240, 473, 1057, 1181, 1261
HpyCH4III ACNGT 1 cut(s) 812
HpyCH4IV ACGT 3 cut(s) 620, 783, 1307
HpyCH4V TGCA 8 cut(s) 397, 445, 505, 788, 836, 937, 992, 1198
HpyF10VI GCNNNNNNNGC 2 cut(s) 880, 889
HpyF3I CTNAG 2 cut(s) 108, 376
HpySE526I ACGT 3 cut(s) 620, 783, 1307
Hsp92I GRCGYC 1 cut(s) 1084
Hsp92II CATG 7 cut(s) 280, 340, 401, 906, 992, 1219, 1238
HspAI GCGC 2 cut(s) 251, 614
Kzo9I GATC 4 cut(s) 651, 862, 1069, 1212
Lsp1109I GCAGC 4 cut(s) 136, 928, 1123, 1182
LweI GCATC 3 cut(s) 355, 492, 1234
MaeI CTAG 2 cut(s) 204, 1286
MaeII ACGT 3 cut(s) 620, 783, 1307
MaeIII GTNAC 5 cut(s) 418, 454, 562, 806, 926
MalI GATC 4 cut(s) 653, 864, 1071, 1214
MboI GATC 4 cut(s) 651, 862, 1069, 1212
MboII GAAGA 5 cut(s) 27, 192, 460, 1181, 1288
MfeI CAATTG 1 cut(s) 993
MflI RGATCY 1 cut(s) 1069
MhlI GDGCHC 2 cut(s) 956, 1148
MluCI AATT 4 cut(s) 45, 626, 978, 993
MlyI GAGTC 3 cut(s) 294, 559, 1087
MmeI TCCRAC 1 cut(s) 593
MseI TTAA 3 cut(s) 491, 623, 1245
MslI CAYNNNNRTG 3 cut(s) 402, 646, 1306
MspR9I CCNGG 1 cut(s) 1139
MunI CAATTG 1 cut(s) 993
MvaI CCWGG 1 cut(s) 1139
MwoI GCNNNNNNNGC 2 cut(s) 880, 889
NdeI CATATG 1 cut(s) 574
NdeII GATC 4 cut(s) 651, 862, 1069, 1212
NlaIII CATG 7 cut(s) 280, 340, 401, 906, 992, 1219, 1238
NlaIV GGNNCC 4 cut(s) 471, 954, 955, 1071
NmuCI GTSAC 3 cut(s) 418, 562, 806
NspI RCATGY 1 cut(s) 992
OliI CACNNNNGTG 1 cut(s) 1306
PaeI GCATGC 1 cut(s) 992
PaeR7I CTCGAG 2 cut(s) 36, 1207
PagI TCATGA 1 cut(s) 1234
PceI AGGCCT 1 cut(s) 208
PfeI GAWTC 7 cut(s) 132, 161, 604, 822, 998, 1020, 1238
PflMI CCANNNNNTGG 2 cut(s) 56, 1080
PkrI GCNGC 4 cut(s) 151, 943, 1113, 1197
PleI GAGTC 3 cut(s) 293, 559, 1087
PpsI GAGTC 3 cut(s) 293, 559, 1087
Ppu21I YACGTR 1 cut(s) 1308
Psp1406I AACGTT 1 cut(s) 783
Psp6I CCWGG 1 cut(s) 1137
PspGI CCWGG 1 cut(s) 1137
PspN4I GGNNCC 4 cut(s) 471, 954, 955, 1071
PspOMI GGGCCC 1 cut(s) 952
PspPI GGNCC 3 cut(s) 591, 952, 953
PspXI VCTCGAGB 2 cut(s) 36, 1207
PsuI RGATCY 1 cut(s) 1069
RsaI GTAC 3 cut(s) 106, 719, 1057
RsaNI GTAC 3 cut(s) 105, 718, 1056
RseI CAYNNNNRTG 3 cut(s) 402, 646, 1306
SalI GTCGAC 1 cut(s) 1086
SaqAI TTAA 3 cut(s) 491, 623, 1245
SatI GCNGC 4 cut(s) 150, 942, 1112, 1196
Sau3AI GATC 4 cut(s) 651, 862, 1069, 1212
Sau96I GGNCC 3 cut(s) 591, 952, 953
ScaI AGTACT 1 cut(s) 1057
SchI GAGTC 3 cut(s) 294, 559, 1087
ScrFI CCNGG 1 cut(s) 1139
SduI GDGCHC 2 cut(s) 956, 1148
SfaNI GCATC 3 cut(s) 355, 492, 1234
SfcI CTRYAG 1 cut(s) 945
Sfr274I CTCGAG 2 cut(s) 36, 1207
SlaI CTCGAG 2 cut(s) 36, 1207
SmiMI CAYNNNNRTG 3 cut(s) 402, 646, 1306
SmlI CTYRAG 6 cut(s) 36, 165, 697, 856, 972, 1207
SmoI CTYRAG 6 cut(s) 36, 165, 697, 856, 972, 1207
SphI GCATGC 1 cut(s) 992
Sse9I AATT 4 cut(s) 45, 626, 978, 993
SseBI AGGCCT 1 cut(s) 208
SsiI CCGC 1 cut(s) 892
SspMI CTAG 2 cut(s) 204, 1286
StuI AGGCCT 1 cut(s) 208
StyD4I CCNGG 1 cut(s) 1137
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 812
TaiI ACGT 3 cut(s) 623, 786, 1310
TaqI TCGA 3 cut(s) 37, 1087, 1208
TaqII GACCGA 1 cut(s) 1105
TasI AATT 4 cut(s) 45, 626, 978, 993
TatI WGTACW 3 cut(s) 104, 717, 1055
TfiI GAWTC 7 cut(s) 132, 161, 604, 822, 998, 1020, 1238
Tru1I TTAA 3 cut(s) 491, 623, 1245
Tru9I TTAA 3 cut(s) 491, 623, 1245
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 3 cut(s) 418, 562, 806
TseI GCWGC 4 cut(s) 149, 941, 1111, 1195
Tsp45I GTSAC 3 cut(s) 418, 562, 806
TspDTI ATGAA 6 cut(s) 144, 265, 377, 761, 1188, 1251
TspRI CASTG 1 cut(s) 36
Van91I CCANNNNNTGG 2 cut(s) 56, 1080
XagI CCTNNNNNAGG 1 cut(s) 39
XapI RAATTY 1 cut(s) 45
XbaI TCTAGA 1 cut(s) 1285
XceI RCATGY 1 cut(s) 992
XhoI CTCGAG 2 cut(s) 36, 1207
XmiI GTMKAC 1 cut(s) 1087
XspI CTAG 2 cut(s) 204, 1286
ZrmI AGTACT 1 cut(s) 1057
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.