Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0015559

Physical Location & Seq

Genomic Coordinates Reverse (-)

10492867 .. 10496746

Gene Structure 3880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1115800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGCATCTATTCGAAGGACATTGTCTCCGGTGCCTCGAGTAGGAACTGCACTCAATGGGGAAACCTGTTCAGTTGCTTCTCCATTGTCCAAGTCCTCATTGTGTACTCAGAACTACCCCTCATCCAATGGATTCTTGTCGTCTGTGTCCACTTTGCTCAACCCTTTTGTTCTCAAAGTTTATTCACCAAGGTCTAATAGGCCTCTTGAGAAGTCAAAAGACTCAAAACCAAGATGGCAAACTTGGAGGAGGGCGTTTTGCCATTTCTTCATTTGTTTCATTGTTGGCCTATTCATTGGACTTACGCCCTTTGGTTCAATGAATTTACCTGCGAATCTCATGTCAAAGCATCAAGACTTATCCGTTGACATGTTATCTTTAGTTGGGTTTCAGTTGCATGATACTACATACAGAAATATGACACCATCAGAAAGGGTGAGATTGCAGGAGAATGTTACAGCAGAGTTGCAAGTCAAAGGGCGGGAAGCAAAAGATGGGACTCCAGAAAAATCTATAGATAATCGATTTCTCATTCAAGAATCAGATTTGGAATCCCGGAAGCTTTTGATAATAGTGACTCCAACTTATGCTCAGTCATTTCAAGCCTATAATCTGAATCGTATGATACACACATTAAAATTAACCTCACCTCCATTGTTATGGATCGTTGTGGAGATGACCTCCCAATCTGCAGAAACAACTGACATCTTGAGGAGATCTGGGATTATGTACATACATCTTGTTTGCAATAAAAATCTTACTGATGTAAGAGACAAAAGTGTTCATCAAAGAAATGTTGCACTTTCTCACATTGAAACTCACCATCTTGATGGAATCATCTACTTTGCAAATGAGGAAAACGTCTACTCCATCGATCTTTTTGAGCAAATGAGGCAGATCAGGCGGTTTGGGACGTGGACCGTGGAAAAAATGATAGGTGGAAAGATGAAACCTGTTATTGAAGGCCCCGTTTGTAATGGAACTCAGGTCATAGGATGGCATGTAACTGAGTCAAATAGAAGGTTCCAGAGGTTTTATGCTGACATATCAGGATTTGCCTTCAATAGTACGATACTCTGGGACCCTAAAAGGTGGCATCGACCGACTCTTGAACCCATTAGGCAGCTCGATGAAGGCAATGATGATTTCAAGACGAGCACATTTATTGAACAAGTTGTCGAAGATGAAAGTCAGATGGAAGGTTTATTGCACGATTGCTCAAGAATCATGGTTTGGCAACATCACCGTGGATCATCTAATACTTTCTATCCCTCCAAATGGATCACCAAAGATGGCCTAGATGTCATTGCCTCACTTAAGCGAAATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009832 GO:0009834 GO:0009987 GO:0010208 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0010584 GO:0010927 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0022607 GO:0030198 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0085029 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_43

Protein Analysis

444

Amino Acids

50.79

Weight (kDa)

8.97

Isoelectric Point (pI)

53.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_43	PF03360	208 - 414	1.7e-63	Glycosyltransferase family 43

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015559)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35840 FvH4_2g35840 FvH4_2g35840
malus_domestica	MD08G1115800.v1.1
prunus_persica	Prupe.1G450500_v2.0.a1 Prupe.1G450500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0305981
rosa_laevigata	RLG00000010840
rosa_multiflora	Rmu_sc0001809.1_g000057
rosa_roxburghii	Rroxscaffold_7G00162170
rosa_rugosa	Rorug06G0345800
rosa_samantha	Rh6AG457700 Rh6BG443400 Rh6CG471800 Rh6DG458200
rosa_wichuraiana	Rw6G039930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	337
AccB1I	GGYRCC	1 cut(s)	31
AccI	GTMKAC	1 cut(s)	864
AciI	CCGC	2 cut(s)	481, 904
AclWI	GGATC	3 cut(s)	671, 1258, 1289
AcsI	RAATTY	2 cut(s)	322, 1324
AfaI	GTAC	3 cut(s)	106, 731, 1069
AfiI	CCNNNNNNNGG	2 cut(s)	41, 1278
AflII	CTTAAG	1 cut(s)	1316
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	9 cut(s)	318, 536, 602, 815, 962, 1063, 1112, 1150, 1169
AjiI	CACGTC	1 cut(s)	915
AjuI	GAANNNNNNNTTGG	2 cut(s)	1216, 1248
AluBI	AGCT	2 cut(s)	562, 1126
AluI	AGCT	2 cut(s)	562, 1126
Alw21I	GWGCWC	1 cut(s)	1160
Alw26I	GTCTC	2 cut(s)	30, 765
AlwI	GGATC	3 cut(s)	671, 1258, 1289
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	4 cut(s)	200, 286, 964, 1294
ApeKI	GCWGC	1 cut(s)	1123
ApoI	RAATTY	2 cut(s)	322, 1324
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AspS9I	GGNCC	3 cut(s)	918, 965, 1081
AsuC2I	CCSGG	1 cut(s)	556
AsuHPI	GGTGA	6 cut(s)	177, 448, 639, 812, 1235, 1276
AsuII	TTCGAA	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	2 cut(s)	918, 1081
BanI	GGYRCC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	1160
BbvI	GCAGC	1 cut(s)	1135
BccI	CCATC	9 cut(s)	228, 433, 488, 824, 831, 878, 990, 1189, 1286
BcnI	CCSGG	1 cut(s)	556
BcoDI	GTCTC	2 cut(s)	30, 765
BfaI	CTAG	1 cut(s)	1298
BfmI	CTRYAG	2 cut(s)	513, 690
BfrI	CTTAAG	1 cut(s)	1316
BfuAI	ACCTGC	1 cut(s)	337
BglII	AGATCT	1 cut(s)	716
BisI	GCNGC	1 cut(s)	1124
BlsI	GCNGC	1 cut(s)	1125
Bme1390I	CCNGG	1 cut(s)	556
Bme18I	GGWCC	2 cut(s)	918, 1081
BmeT110I	CYCGRG	1 cut(s)	36
BmgBI	CACGTC	1 cut(s)	915
BmgT120I	GGNCC	3 cut(s)	918, 965, 1081
BmiI	GGNNCC	5 cut(s)	33, 967, 1025, 1082, 1083
BmrFI	CCNGG	1 cut(s)	556
BmsI	GCATC	3 cut(s)	14, 358, 1105
BplI	GAGNNNNNCTC	2 cut(s)	665, 697
BpmI	CTGGAG	1 cut(s)	486
Bpu14I	TTCGAA	1 cut(s)	13
BpuEI	CTTGAG	3 cut(s)	227, 730, 1204
BpuMI	CCSGG	1 cut(s)	556
Bsa29I	ATCGAT	2 cut(s)	523, 873
BsaJI	CCNNGG	3 cut(s)	188, 921, 1246
BsaWI	WCCGGW	1 cut(s)	28
BsaXI	ACNNNNNCTCC	6 cut(s)	10, 40, 634, 664, 851, 881
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 1278
Bse3DI	GCAATG	2 cut(s)	1144, 1305
BseCI	ATCGAT	2 cut(s)	523, 873
BseDI	CCNNGG	3 cut(s)	188, 921, 1246
BseGI	GGATG	2 cut(s)	122, 1001
BseLI	CCNNNNNNNGG	2 cut(s)	41, 1278
BseMI	GCAATG	2 cut(s)	1144, 1305
BseMII	CTCAG	4 cut(s)	122, 605, 998, 999
BseRI	GAGGAG	2 cut(s)	262, 727
BseXI	GCAGC	1 cut(s)	1135
BsgI	GTGCAG	1 cut(s)	33
Bsh1285I	CGRYCG	1 cut(s)	1103
BshFI	GGCC	4 cut(s)	202, 288, 966, 1296
BshNI	GGYRCC	1 cut(s)	31
BshVI	ATCGAT	2 cut(s)	523, 873
BsiEI	CGRYCG	1 cut(s)	1103
BsiHKAI	GWGCWC	1 cut(s)	1160
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	29, 556
BslFI	GGGAC	3 cut(s)	511, 925, 1094
BslI	CCNNNNNNNGG	2 cut(s)	41, 1278
BsmAI	GTCTC	2 cut(s)	30, 765
BsmFI	GGGAC	3 cut(s)	511, 925, 1094
BsnI	GGCC	4 cut(s)	202, 288, 966, 1296
BsoBI	CYCGRG	1 cut(s)	36
Bsp119I	TTCGAA	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	1160
Bsp1407I	TGTACA	1 cut(s)	729
Bsp143I	GATC	6 cut(s)	663, 716, 874, 897, 1250, 1281
BspACI	CCGC	2 cut(s)	481, 904
BspANI	GGCC	4 cut(s)	202, 288, 966, 1296
BspCNI	CTCAG	4 cut(s)	121, 604, 997, 1000
BspDI	ATCGAT	2 cut(s)	523, 873
BspLI	GGNNCC	5 cut(s)	33, 967, 1025, 1082, 1083
BspMAI	CTGCAG	1 cut(s)	694
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	3 cut(s)	671, 1258, 1289
BspT104I	TTCGAA	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	31
BspTI	CTTAAG	1 cut(s)	1316
BsrDI	GCAATG	2 cut(s)	1144, 1305
BsrGI	TGTACA	1 cut(s)	729
BssECI	CCNNGG	3 cut(s)	188, 921, 1246
BssMI	GATC	6 cut(s)	663, 716, 874, 897, 1250, 1281
BssT1I	CCWWGG	1 cut(s)	188
Bst4CI	ACNGT	2 cut(s)	922, 1247
BstAFI	CTTAAG	1 cut(s)	1316
BstAUI	TGTACA	1 cut(s)	729
BstBI	TTCGAA	1 cut(s)	13
BstDEI	CTNAG	4 cut(s)	108, 591, 984, 1008
BstDSI	CCRYGG	2 cut(s)	921, 1246
BstENI	CCTNNNNNAGG	1 cut(s)	39
BstF5I	GGATG	2 cut(s)	122, 1001
BstKTI	GATC	6 cut(s)	666, 719, 877, 900, 1253, 1284
BstMAI	GTCTC	2 cut(s)	30, 765
BstMBI	GATC	6 cut(s)	663, 716, 874, 897, 1250, 1281
BstMCI	CGRYCG	1 cut(s)	1103
BstMWI	GCNNNNNNNGC	2 cut(s)	892, 901
BstNSI	RCATGY	2 cut(s)	373, 1004
BstSCI	CCNGG	1 cut(s)	554
BstSFI	CTRYAG	2 cut(s)	513, 690
BstV1I	GCAGC	1 cut(s)	1135
BstX2I	RGATCY	1 cut(s)	716
BstXI	CCANNNNNNTGG	2 cut(s)	660, 830
BstYI	RGATCY	1 cut(s)	716
Bsu15I	ATCGAT	2 cut(s)	523, 873
BsuRI	GGCC	4 cut(s)	202, 288, 966, 1296
BsuTUI	ATCGAT	2 cut(s)	523, 873
BtgI	CCRYGG	2 cut(s)	921, 1246
BtrI	CACGTC	1 cut(s)	915
BtsCI	GGATG	2 cut(s)	122, 1001
BveI	ACCTGC	1 cut(s)	337
Cfr13I	GGNCC	3 cut(s)	918, 965, 1081
ClaI	ATCGAT	2 cut(s)	523, 873
Csp6I	GTAC	3 cut(s)	105, 730, 1068
CviAII	CATG	5 cut(s)	340, 370, 398, 1001, 1228
CviJI	RGCY	7 cut(s)	202, 288, 562, 605, 966, 1126, 1296
CviKI_1	RGCY	7 cut(s)	202, 288, 562, 605, 966, 1126, 1296
CviQI	GTAC	3 cut(s)	105, 730, 1068
DdeI	CTNAG	4 cut(s)	108, 591, 984, 1008
DpnI	GATC	6 cut(s)	665, 718, 876, 899, 1252, 1283
DpnII	GATC	6 cut(s)	663, 716, 874, 897, 1250, 1281
Eco130I	CCWWGG	1 cut(s)	188
Eco147I	AGGCCT	1 cut(s)	202
Eco47I	GGWCC	2 cut(s)	918, 1081
Eco88I	CYCGRG	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	39
EcoO109I	RGGNCCY	2 cut(s)	965, 1081
EcoT14I	CCWWGG	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	5 cut(s)	343, 373, 401, 1004, 1231
FaqI	GGGAC	3 cut(s)	511, 925, 1094
FatI	CATG	5 cut(s)	339, 369, 397, 1000, 1227
FauI	CCCGC	1 cut(s)	474
FblI	GTMKAC	1 cut(s)	864
Fnu4HI	GCNGC	1 cut(s)	1124
FokI	GGATG	2 cut(s)	109, 1008
Fsp4HI	GCNGC	1 cut(s)	1124
FspBI	CTAG	1 cut(s)	1298
GluI	GCNGC	1 cut(s)	1124
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	4 cut(s)	202, 288, 966, 1296
HapII	CCGG	2 cut(s)	29, 556
Hin1II	CATG	5 cut(s)	343, 373, 401, 1004, 1231
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	1 cut(s)	560
HpaII	CCGG	2 cut(s)	29, 556
HphI	GGTGA	6 cut(s)	177, 448, 639, 812, 1235, 1276
Hpy166II	GTNNAC	5 cut(s)	105, 150, 367, 865, 918
Hpy188I	TCNGA	5 cut(s)	111, 430, 544, 615, 1194
Hpy8I	GTNNAC	5 cut(s)	105, 150, 367, 865, 918
HpyAV	CCTTC	6 cut(s)	9, 956, 1014, 1069, 1127, 1193
HpyCH4III	ACNGT	2 cut(s)	922, 1247
HpyCH4IV	ACGT	2 cut(s)	861, 914
HpyCH4V	TGCA	9 cut(s)	50, 397, 445, 469, 692, 747, 800, 848, 1210
HpyF10VI	GCNNNNNNNGC	2 cut(s)	892, 901
HpyF3I	CTNAG	4 cut(s)	108, 591, 984, 1008
HpySE526I	ACGT	2 cut(s)	861, 914
Hsp92II	CATG	5 cut(s)	343, 373, 401, 1004, 1231
KflI	GGGWCCC	1 cut(s)	1081
Kzo9I	GATC	6 cut(s)	663, 716, 874, 897, 1250, 1281
Lsp1109I	GCAGC	1 cut(s)	1135
LweI	GCATC	3 cut(s)	14, 358, 1105
MaeI	CTAG	1 cut(s)	1298
MaeII	ACGT	2 cut(s)	861, 914
MaeIII	GTNAC	3 cut(s)	454, 574, 1003
MalI	GATC	6 cut(s)	665, 718, 876, 899, 1252, 1283
MboI	GATC	6 cut(s)	663, 716, 874, 897, 1250, 1281
MboII	GAAGA	2 cut(s)	259, 1193
MflI	RGATCY	1 cut(s)	716
MhlI	GDGCHC	1 cut(s)	1160
MluCI	AATT	3 cut(s)	322, 638, 1324
MlyI	GAGTC	5 cut(s)	215, 493, 571, 1019, 1099
MmeI	TCCRAC	1 cut(s)	605
MseI	TTAA	3 cut(s)	635, 641, 1317
MslI	CAYNNNNRTG	3 cut(s)	658, 828, 1245
MspCI	CTTAAG	1 cut(s)	1316
MspI	CCGG	2 cut(s)	29, 556
MspR9I	CCNGG	1 cut(s)	556
MwoI	GCNNNNNNNGC	2 cut(s)	892, 901
NciI	CCSGG	1 cut(s)	556
NdeII	GATC	6 cut(s)	663, 716, 874, 897, 1250, 1281
NlaIII	CATG	5 cut(s)	343, 373, 401, 1004, 1231
NlaIV	GGNNCC	5 cut(s)	33, 967, 1025, 1082, 1083
NmuCI	GTSAC	1 cut(s)	574
NspI	RCATGY	2 cut(s)	373, 1004
NspV	TTCGAA	1 cut(s)	13
PaeR7I	CTCGAG	1 cut(s)	36
PceI	AGGCCT	1 cut(s)	202
PciI	ACATGT	1 cut(s)	369
PfeI	GAWTC	7 cut(s)	132, 334, 539, 551, 616, 834, 1224
PflFI	GACNNNGTC	1 cut(s)	22
PfoI	TCCNGGA	1 cut(s)	554
PkrI	GCNGC	1 cut(s)	1125
PleI	GAGTC	5 cut(s)	215, 493, 571, 1018, 1099
PpsI	GAGTC	5 cut(s)	215, 493, 571, 1018, 1099
PpuMI	RGGWCCY	1 cut(s)	1081
PscI	ACATGT	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	1081
PspN4I	GGNNCC	5 cut(s)	33, 967, 1025, 1082, 1083
PspPI	GGNCC	3 cut(s)	918, 965, 1081
PspPPI	RGGWCCY	1 cut(s)	1081
PspXI	VCTCGAGB	1 cut(s)	36
PstI	CTGCAG	1 cut(s)	694
PsuI	RGATCY	1 cut(s)	716
PsyI	GACNNNGTC	1 cut(s)	22
RsaI	GTAC	3 cut(s)	106, 731, 1069
RsaNI	GTAC	3 cut(s)	105, 730, 1068
RseI	CAYNNNNRTG	3 cut(s)	658, 828, 1245
SaqAI	TTAA	3 cut(s)	635, 641, 1317
SatI	GCNGC	1 cut(s)	1124
Sau3AI	GATC	6 cut(s)	663, 716, 874, 897, 1250, 1281
Sau96I	GGNCC	3 cut(s)	918, 965, 1081
SchI	GAGTC	5 cut(s)	215, 493, 571, 1019, 1099
ScrFI	CCNGG	1 cut(s)	556
SduI	GDGCHC	1 cut(s)	1160
SfaNI	GCATC	3 cut(s)	14, 358, 1105
SfcI	CTRYAG	2 cut(s)	513, 690
Sfr274I	CTCGAG	1 cut(s)	36
SfuI	TTCGAA	1 cut(s)	13
SinI	GGWCC	2 cut(s)	918, 1081
SlaI	CTCGAG	1 cut(s)	36
SmiMI	CAYNNNNRTG	3 cut(s)	658, 828, 1245
SmlI	CTYRAG	5 cut(s)	36, 206, 709, 1219, 1316
SmoI	CTYRAG	5 cut(s)	36, 206, 709, 1219, 1316
Sse9I	AATT	3 cut(s)	322, 638, 1324
SseBI	AGGCCT	1 cut(s)	202
SsiI	CCGC	2 cut(s)	481, 904
SspMI	CTAG	1 cut(s)	1298
StuI	AGGCCT	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	554
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	2 cut(s)	922, 1247
TaiI	ACGT	2 cut(s)	864, 917
TaqI	TCGA	7 cut(s)	13, 37, 523, 873, 1099, 1128, 1179
TaqII	GACCGA	1 cut(s)	1117
TasI	AATT	3 cut(s)	322, 638, 1324
TatI	WGTACW	2 cut(s)	104, 729
TfiI	GAWTC	7 cut(s)	132, 334, 539, 551, 616, 834, 1224
Tru1I	TTAA	3 cut(s)	635, 641, 1317
Tru9I	TTAA	3 cut(s)	635, 641, 1317
TseFI	GTSAC	1 cut(s)	574
TseI	GCWGC	1 cut(s)	1123
Tsp45I	GTSAC	1 cut(s)	574
TspDTI	ATGAA	8 cut(s)	259, 268, 283, 335, 773, 962, 1146, 1200
TspGWI	ACGGA	1 cut(s)	352
Tth111I	GACNNNGTC	1 cut(s)	22
Vha464I	CTTAAG	1 cut(s)	1316
VpaK11BI	GGWCC	2 cut(s)	918, 1081
XagI	CCTNNNNNAGG	1 cut(s)	39
XapI	RAATTY	2 cut(s)	322, 1324
XceI	RCATGY	2 cut(s)	373, 1004
XhoI	CTCGAG	1 cut(s)	36
XmiI	GTMKAC	1 cut(s)	864
XspI	CTAG	1 cut(s)	1298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.