Prupe.1G450500_v2.0.a1

Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
37957137 .. 37961378
4242 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G450500.2

Sequence Viewer

Length: 1314 bp
ATGGCGTCTATTAGAAGAACTTTGTCTCCAGTGCCTCGAGCAGGAACTGCACTAAATGGGGAAGCTTGTTCAGTTGCTTCTCCATTGTCCAGGTCCTCGTGTACTCACAACAACTACCCAACATCCAATGGATTGTTATCGTCTCTGTCCGCTTCATTGGACCCTTTTGTTCTCAGTGTCTTTTCTCCAAGGTCTTCTAGGCCCCTTGAGAAGTCAAAACCAAAGGGCCATATTTGGAGGAGGGCACTTTCCCATTTCTTCATTTGTTTCATTGTTGGGCTATTCATTGGGCTTACACCCTTTGCCTCAATGAATTTCTCCGTGAATCTCATGTCGAAGCATCAAGACTTCTCCTTTGACATGATATCTTCAGTTGGGTTTCAGTTGCATGATAGTGTACACAGAAATGTCACACTATTCGACGGTGTGAAAATGAAGAAGAATGTTACGACAGAGTCGCAAGTCAAGGACTGGGAGGCAAAAGATGGCATTCTAGAGAAAGCTGTAGATAACCGGTTACTCATCCAAGAATCAGATTTGGAGTTCCGAAAGCTTTTGATAATCGTGACCCCAACATATGCTCAGCCATTTCAAGCCTATAATCTGAATCGTTTGGCACACACACTAAAATTAATCTCACCTCCATTGTTATGGATTGTTGTGGAGATGACCTCCCAATCTGCAGAAACAGCTGACATCTTGAAGAGAACTGGGATTATGTACAGGCATCTCGTTTGCAATAACAATCTTACTGATGTAAGAGACAGAAGTGTTCATCAAAGAAATGTTGCACTTTCTCACATTGAAACTCACCGTCTTGATGGAATCGTCTACTTTGCAGATGAGGATAATGTCTATTCAACTGATCTTTTCGAGCAAATGAGGCAGATCAGGCGGTTTGGGACCTGGACAGTGGCCAAACTAATGAGTGGCAAAATGAAACCTATTATTGAGGGCCCGGTTTGTAATGGAACTCAGGTCATAGGATGGCATGTAAATGAATCAAGTAGAAGATTTCAGAGATTTCATGCTAAAATATCAGGATTTGCCTTCAATAGTTCGATACTCTGGGACCCCAAAGGGTGGCATCGACCAACCCTTGAACCTATTAGGCAGCTTGAGACAGACAATGATGATTTCAAGGCGAGCACATTTATTGAACAAGTTGTCGAAGATGAAAGTCAAATGGAAGGTTTACAGCATGATTGCTCAACAATCATGGTTTGGTACCATCACCATGAATCATCTAATACCTTCTATCCTCACAAATGGATCATGAAAGATAGCCTAGATGTAATTGCCTCACTTAAGTGA

Protein Analysis

438

Amino Acids

49.84

Weight (kDa)

8.44

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015559)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1227
AccB1I GGYRCC 1 cut(s) 1227
AccB7I CCANNNNNTGG 1 cut(s) 1083
AccI GTMKAC 1 cut(s) 831
AciI CCGC 2 cut(s) 150, 895
AclWI GGATC 1 cut(s) 1280
AcoI YGGCCR 1 cut(s) 915
AcsI RAATTY 1 cut(s) 313
AcuI CTGAAG 1 cut(s) 354
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 103, 399, 722, 1229
AfiI CCNNNNNNNGG 2 cut(s) 41, 1083
AflII CTTAAG 1 cut(s) 1307
AgeI ACCGGT 1 cut(s) 513
AgsI TTSAA 8 cut(s) 593, 703, 806, 861, 1054, 1103, 1141, 1160
AjnI CCWGG 2 cut(s) 89, 905
AleI CACNNNNGTG 1 cut(s) 1309
AloI GAACNNNNNNTCC 2 cut(s) 10, 42
AluBI AGCT 5 cut(s) 65, 503, 553, 692, 1117
AluI AGCT 5 cut(s) 65, 503, 553, 692, 1117
Alw21I GWGCWC 1 cut(s) 1151
Alw26I GTCTC 4 cut(s) 30, 147, 756, 1115
AlwI GGATC 1 cut(s) 1280
AlwNI CAGNNNCTG 1 cut(s) 47
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 4 cut(s) 200, 226, 915, 955
ApaI GGGCCC 1 cut(s) 959
ApeKI GCWGC 1 cut(s) 1114
ApoI RAATTY 1 cut(s) 313
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
AseI ATTAAT 1 cut(s) 632
AsiGI ACCGGT 1 cut(s) 513
Asp718I GGTACC 1 cut(s) 1227
AspS9I GGNCC 8 cut(s) 93, 160, 201, 226, 903, 955, 956, 1072
AsuC2I CCSGG 1 cut(s) 959
AsuHPI GGTGA 3 cut(s) 630, 803, 1226
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 4 cut(s) 93, 160, 903, 1072
BaeGI GKGCMC 2 cut(s) 247, 959
BalI TGGCCA 1 cut(s) 917
BanI GGYRCC 1 cut(s) 1227
BanII GRGCYC 1 cut(s) 959
BauI CACGAG 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 1151
BbvI GCAGC 1 cut(s) 1126
BccI CCATC 4 cut(s) 479, 815, 981, 1239
BciT130I CCWGG 2 cut(s) 91, 907
BcnI CCSGG 1 cut(s) 959
BcoDI GTCTC 4 cut(s) 30, 147, 756, 1115
BfaI CTAG 3 cut(s) 198, 494, 1289
BfmI CTRYAG 2 cut(s) 504, 681
BfrI CTTAAG 1 cut(s) 1307
BisI GCNGC 1 cut(s) 1115
BlpI GCTNAGC 1 cut(s) 582
BlsI GCNGC 1 cut(s) 1116
Bme1390I CCNGG 3 cut(s) 91, 907, 959
Bme18I GGWCC 4 cut(s) 93, 160, 903, 1072
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 8 cut(s) 93, 160, 201, 226, 903, 955, 956, 1072
BmiI GGNNCC 7 cut(s) 162, 203, 904, 957, 1073, 1074, 1229
BmrFI CCNGG 3 cut(s) 91, 907, 959
BmrI ACTGGG 2 cut(s) 481, 720
BmsI GCATC 3 cut(s) 349, 736, 1096
BmuI ACTGGG 2 cut(s) 481, 720
BpiI GAAGAC 1 cut(s) 186
BplI GAGNNNNNCTC 2 cut(s) 656, 688
BpmI CTGGAG 1 cut(s) 12
Bpu1102I GCTNAGC 1 cut(s) 582
BpuEI CTTGAG 2 cut(s) 227, 1139
BpuMI CCSGG 1 cut(s) 959
BsaBI GATNNNNATC 1 cut(s) 136
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 188
BsaWI WCCGGW 1 cut(s) 513
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 1083
Bse118I RCCGGY 1 cut(s) 513
Bse1I ACTGG 3 cut(s) 29, 476, 715
Bse8I GATNNNNATC 1 cut(s) 136
BseBI CCWGG 2 cut(s) 91, 907
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 3 cut(s) 122, 522, 992
BseJI GATNNNNATC 1 cut(s) 136
BseLI CCNNNNNNNGG 2 cut(s) 41, 1083
BseMII CTCAG 3 cut(s) 187, 596, 989
BseNI ACTGG 3 cut(s) 29, 476, 715
BseRI GAGGAG 1 cut(s) 253
BseSI GKGCMC 2 cut(s) 247, 959
BseXI GCAGC 1 cut(s) 1126
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 4 cut(s) 202, 228, 917, 957
BshNI GGYRCC 1 cut(s) 1227
BshTI ACCGGT 1 cut(s) 513
BsiHKAI GWGCWC 1 cut(s) 1151
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 2 cut(s) 514, 959
BslFI GGGAC 2 cut(s) 916, 1085
BslI CCNNNNNNNGG 2 cut(s) 41, 1083
BsmAI GTCTC 4 cut(s) 30, 147, 756, 1115
BsmBI CGTCTC 1 cut(s) 147
BsmFI GGGAC 2 cut(s) 916, 1085
BsmI GAATGC 1 cut(s) 489
BsnI GGCC 4 cut(s) 202, 228, 917, 957
BsoBI CYCGRG 1 cut(s) 36
Bsp120I GGGCCC 1 cut(s) 955
Bsp1286I GDGCHC 3 cut(s) 247, 959, 1151
Bsp1407I TGTACA 2 cut(s) 397, 720
Bsp143I GATC 3 cut(s) 865, 888, 1272
Bsp1720I GCTNAGC 1 cut(s) 582
BspACI CCGC 2 cut(s) 150, 895
BspANI GGCC 4 cut(s) 202, 228, 917, 957
BspCNI CTCAG 3 cut(s) 186, 595, 988
BspHI TCATGA 1 cut(s) 1275
BspLI GGNNCC 7 cut(s) 162, 203, 904, 957, 1073, 1074, 1229
BspMAI CTGCAG 1 cut(s) 685
BspPI GGATC 1 cut(s) 1280
BspT107I GGYRCC 1 cut(s) 1227
BspTI CTTAAG 1 cut(s) 1307
BsrFI RCCGGY 1 cut(s) 513
BsrGI TGTACA 2 cut(s) 397, 720
BsrI ACTGG 3 cut(s) 29, 476, 715
BssAI RCCGGY 1 cut(s) 513
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 3 cut(s) 865, 888, 1272
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 97
BssT1I CCWWGG 1 cut(s) 188
Bst2BI CACGAG 1 cut(s) 97
Bst2UI CCWGG 2 cut(s) 91, 907
Bst4CI ACNGT 3 cut(s) 425, 815, 913
Bst6I CTCTTC 1 cut(s) 698
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 1307
BstAPI GCANNNNNTGC 1 cut(s) 47
BstAUI TGTACA 2 cut(s) 397, 720
BstC8I GCNNGC 1 cut(s) 1147
BstDEI CTNAG 3 cut(s) 173, 582, 975
BstENI CCTNNNNNAGG 1 cut(s) 39
BstF5I GGATG 3 cut(s) 122, 522, 992
BstKTI GATC 3 cut(s) 868, 891, 1275
BstMAI GTCTC 4 cut(s) 30, 147, 756, 1115
BstMBI GATC 3 cut(s) 865, 888, 1272
BstMWI GCNNNNNNNGC 4 cut(s) 47, 689, 883, 892
BstNI CCWGG 2 cut(s) 91, 907
BstNSI RCATGY 1 cut(s) 995
BstSCI CCNGG 3 cut(s) 89, 905, 957
BstSFI CTRYAG 2 cut(s) 504, 681
BstSLI GKGCMC 2 cut(s) 247, 959
BstV1I GCAGC 1 cut(s) 1126
BstV2I GAAGAC 1 cut(s) 186
BstXI CCANNNNNNTGG 1 cut(s) 651
BsuRI GGCC 4 cut(s) 202, 228, 917, 957
BtsCI GGATG 3 cut(s) 122, 522, 992
BtsIMutI CAGTG 3 cut(s) 36, 181, 918
Cac8I GCNNGC 1 cut(s) 1147
CaiI CAGNNNCTG 1 cut(s) 47
CciI TCATGA 1 cut(s) 1275
Cfr10I RCCGGY 1 cut(s) 513
Cfr13I GGNCC 8 cut(s) 93, 160, 201, 226, 903, 955, 956, 1072
Csp6I GTAC 4 cut(s) 102, 398, 721, 1228
CspAI ACCGGT 1 cut(s) 513
CviAII CATG 9 cut(s) 331, 361, 389, 992, 1028, 1202, 1219, 1238, 1276
CviQI GTAC 4 cut(s) 102, 398, 721, 1228
DdeI CTNAG 3 cut(s) 173, 582, 975
DpnI GATC 3 cut(s) 867, 890, 1274
DpnII GATC 3 cut(s) 865, 888, 1272
EaeI YGGCCR 1 cut(s) 915
Eam1104I CTCTTC 1 cut(s) 698
EarI CTCTTC 1 cut(s) 698
Eco130I CCWWGG 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 959
Eco32I GATATC 1 cut(s) 366
Eco47I GGWCC 4 cut(s) 93, 160, 903, 1072
Eco57I CTGAAG 1 cut(s) 354
Eco88I CYCGRG 1 cut(s) 36
EcoNI CCTNNNNNAGG 1 cut(s) 39
EcoO109I RGGNCCY 5 cut(s) 93, 201, 903, 955, 1072
EcoRII CCWGG 2 cut(s) 89, 905
EcoRV GATATC 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 959
ErhI CCWWGG 1 cut(s) 188
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 9 cut(s) 334, 364, 392, 995, 1031, 1205, 1222, 1241, 1279
FaqI GGGAC 2 cut(s) 916, 1085
FatI CATG 9 cut(s) 330, 360, 388, 991, 1027, 1201, 1218, 1237, 1275
FauNDI CATATG 1 cut(s) 577
FblI GTMKAC 1 cut(s) 831
Fnu4HI GCNGC 1 cut(s) 1115
FokI GGATG 3 cut(s) 109, 509, 999
FriOI GRGCYC 1 cut(s) 959
Fsp4HI GCNGC 1 cut(s) 1115
FspBI CTAG 3 cut(s) 198, 494, 1289
GluI GCNGC 1 cut(s) 1115
GsuI CTGGAG 1 cut(s) 12
HaeIII GGCC 4 cut(s) 202, 228, 917, 957
HapII CCGG 2 cut(s) 514, 959
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 9 cut(s) 334, 364, 392, 995, 1031, 1205, 1222, 1241, 1279
HindIII AAGCTT 2 cut(s) 63, 551
HinfI GANTC 7 cut(s) 325, 455, 530, 607, 825, 1001, 1241
HpaII CCGG 2 cut(s) 514, 959
HphI GGTGA 3 cut(s) 630, 803, 1226
Hpy166II GTNNAC 5 cut(s) 102, 398, 400, 832, 1196
Hpy188I TCNGA 4 cut(s) 535, 548, 606, 1020
Hpy188III TCNNGA 7 cut(s) 344, 494, 565, 700, 818, 1041, 1276
Hpy8I GTNNAC 5 cut(s) 102, 398, 400, 832, 1196
Hpy99I CGWCG 1 cut(s) 425
HpyAV CCTTC 3 cut(s) 1060, 1184, 1264
HpyCH4III ACNGT 3 cut(s) 425, 815, 913
HpyCH4V TGCA 6 cut(s) 50, 388, 683, 738, 791, 839
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 689, 883, 892
HpyF3I CTNAG 3 cut(s) 173, 582, 975
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 9 cut(s) 334, 364, 392, 995, 1031, 1205, 1222, 1241, 1279
KflI GGGWCCC 1 cut(s) 1072
KpnI GGTACC 1 cut(s) 1231
Kzo9I GATC 3 cut(s) 865, 888, 1272
Lsp1109I GCAGC 1 cut(s) 1126
LweI GCATC 3 cut(s) 349, 736, 1096
MaeI CTAG 3 cut(s) 198, 494, 1289
MaeIII GTNAC 4 cut(s) 409, 445, 516, 565
MalI GATC 3 cut(s) 867, 890, 1274
MboI GATC 3 cut(s) 865, 888, 1272
MboII GAAGA 9 cut(s) 27, 186, 250, 360, 448, 451, 715, 1023, 1184
MhlI GDGCHC 3 cut(s) 247, 959, 1151
MlsI TGGCCA 1 cut(s) 917
MluCI AATT 3 cut(s) 313, 629, 1296
MluNI TGGCCA 1 cut(s) 917
MlyI GAGTC 1 cut(s) 464
Mox20I TGGCCA 1 cut(s) 917
MscI TGGCCA 1 cut(s) 917
MseI TTAA 2 cut(s) 632, 1308
MslI CAYNNNNRTG 6 cut(s) 393, 405, 649, 996, 1236, 1309
Msp20I TGGCCA 1 cut(s) 917
MspA1I CMGCKG 1 cut(s) 692
MspCI CTTAAG 1 cut(s) 1307
MspI CCGG 2 cut(s) 514, 959
MspR9I CCNGG 3 cut(s) 91, 907, 959
Mva1269I GAATGC 1 cut(s) 489
MvaI CCWGG 2 cut(s) 91, 907
MwoI GCNNNNNNNGC 4 cut(s) 47, 689, 883, 892
NciI CCSGG 1 cut(s) 959
NdeI CATATG 1 cut(s) 577
NdeII GATC 3 cut(s) 865, 888, 1272
NlaIII CATG 9 cut(s) 334, 364, 392, 995, 1031, 1205, 1222, 1241, 1279
NlaIV GGNNCC 7 cut(s) 162, 203, 904, 957, 1073, 1074, 1229
NmuCI GTSAC 2 cut(s) 409, 565
NspI RCATGY 1 cut(s) 995
OliI CACNNNNGTG 1 cut(s) 1309
PaeR7I CTCGAG 1 cut(s) 36
PagI TCATGA 1 cut(s) 1275
PctI GAATGC 1 cut(s) 489
PfeI GAWTC 6 cut(s) 325, 530, 607, 825, 1001, 1241
PflFI GACNNNGTC 1 cut(s) 454
PflMI CCANNNNNTGG 1 cut(s) 1083
PinAI ACCGGT 1 cut(s) 513
PkrI GCNGC 1 cut(s) 1116
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
PpuMI RGGWCCY 3 cut(s) 93, 903, 1072
PshBI ATTAAT 1 cut(s) 632
Psp5II RGGWCCY 3 cut(s) 93, 903, 1072
Psp6I CCWGG 2 cut(s) 89, 905
PspGI CCWGG 2 cut(s) 89, 905
PspN4I GGNNCC 7 cut(s) 162, 203, 904, 957, 1073, 1074, 1229
PspOMI GGGCCC 1 cut(s) 955
PspPI GGNCC 8 cut(s) 93, 160, 201, 226, 903, 955, 956, 1072
PspPPI RGGWCCY 3 cut(s) 93, 903, 1072
PspXI VCTCGAGB 1 cut(s) 36
PstI CTGCAG 1 cut(s) 685
PstNI CAGNNNCTG 1 cut(s) 47
PsyI GACNNNGTC 1 cut(s) 454
PvuII CAGCTG 1 cut(s) 692
RsaI GTAC 4 cut(s) 103, 399, 722, 1229
RsaNI GTAC 4 cut(s) 102, 398, 721, 1228
RseI CAYNNNNRTG 6 cut(s) 393, 405, 649, 996, 1236, 1309
SaqAI TTAA 2 cut(s) 632, 1308
SatI GCNGC 1 cut(s) 1115
Sau3AI GATC 3 cut(s) 865, 888, 1272
Sau96I GGNCC 8 cut(s) 93, 160, 201, 226, 903, 955, 956, 1072
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 3 cut(s) 91, 907, 959
SduI GDGCHC 3 cut(s) 247, 959, 1151
SfaNI GCATC 3 cut(s) 349, 736, 1096
SfcI CTRYAG 2 cut(s) 504, 681
Sfr274I CTCGAG 1 cut(s) 36
SinI GGWCC 4 cut(s) 93, 160, 903, 1072
SlaI CTCGAG 1 cut(s) 36
SmiMI CAYNNNNRTG 6 cut(s) 393, 405, 649, 996, 1236, 1309
SmlI CTYRAG 4 cut(s) 36, 206, 1118, 1307
SmoI CTYRAG 4 cut(s) 36, 206, 1118, 1307
Sse9I AATT 3 cut(s) 313, 629, 1296
SsiI CCGC 2 cut(s) 150, 895
SspMI CTAG 3 cut(s) 198, 494, 1289
StyD4I CCNGG 3 cut(s) 89, 905, 957
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 3 cut(s) 425, 815, 913
TaqI TCGA 7 cut(s) 37, 335, 420, 873, 1061, 1090, 1170
TasI AATT 3 cut(s) 313, 629, 1296
TatI WGTACW 3 cut(s) 101, 397, 720
TfiI GAWTC 6 cut(s) 325, 530, 607, 825, 1001, 1241
Tru1I TTAA 2 cut(s) 632, 1308
Tru9I TTAA 2 cut(s) 632, 1308
TscAI CASTG 3 cut(s) 36, 181, 918
TseFI GTSAC 2 cut(s) 409, 565
TseI GCWGC 1 cut(s) 1114
Tsp45I GTSAC 2 cut(s) 409, 565
TspGWI ACGGA 1 cut(s) 310
TspRI CASTG 3 cut(s) 36, 181, 918
Tth111I GACNNNGTC 1 cut(s) 454
Van91I CCANNNNNTGG 1 cut(s) 1083
Vha464I CTTAAG 1 cut(s) 1307
VpaK11BI GGWCC 4 cut(s) 93, 160, 903, 1072
VspI ATTAAT 1 cut(s) 632
XagI CCTNNNNNAGG 1 cut(s) 39
XapI RAATTY 1 cut(s) 313
XbaI TCTAGA 1 cut(s) 493
XceI RCATGY 1 cut(s) 995
XhoI CTCGAG 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 831
XspI CTAG 3 cut(s) 198, 494, 1289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.