FvH4_2g37377

SWIB/MDM2 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015561
Physical Location & Seq
Reverse (-)
27250545 .. 27251048
504 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37377.t1

Sequence Viewer

Length: 414 bp
ATGGCGGTTGCTAGCGCTCATAGGATAAGAGGAGGGTCTCTGACGGCGGCCACCGCCGCTCTCTCCGTCACGGAATCAAAACTGAAGGTCAAGGCTTGCTCTCCGGAGGTGTGCAAATTTCTCGGCATCCCTGACCCATCTGACCGATCTCGATCTCCCACTGCTCTCCTGGTCTCCAAGTTTATCAGACTCCACAGCAATCGGAGTCCTGGAATCAAGGACCGGAATTGGGAGCAGAACTTGAAGATACTACTGCACGGCAAAGACAGAGTTGGGTTGCCGGAGGTCACCAGGTTGCTCTCGCCGGAATTTACCTATTCCACAATCAAAAGCAGCAGGGATGCAACAGCCACATATGGGCAGATCGAGGACAACAAATCCAAGAAAATAGCAGGGAAGGCCATCAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIB

Protein Analysis

138

Amino Acids

14.93

Weight (kDa)

10.15

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g37377
malus_domestica MD08G1001500.v1.1 MD15G1000800.v1.1
prunus_persica Prupe.1G353500_v2.0.a1
pyrus_communis pycom08g00090 pycom15g00020
rosa_chinensis RchiOBHm_Chr6g0304331
rosa_laevigata RLG00000010989
rosa_multiflora Rmu_co8338167.1_g000001
rosa_roxburghii Rroxscaffold_7G00163830
rosa_rugosa Rorug06G0330300
rosa_samantha Rh6AG443500 Rh6BG458900 Rh6CG456300 Rh6DG443000
rosa_wichuraiana Rw6G038490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 59
AccIII TCCGGA 1 cut(s) 103
AciI CCGC 4 cut(s) 5, 47, 54, 57
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 2 cut(s) 116, 308
AcuI CTGAAG 1 cut(s) 104
AfeI AGCGCT 1 cut(s) 16
AfiI CCNNNNNNNGG 2 cut(s) 229, 357
AgsI TTSAA 1 cut(s) 244
AjnI CCWGG 3 cut(s) 168, 208, 290
Alw26I GTCTC 2 cut(s) 42, 178
Aor13HI TCCGGA 1 cut(s) 103
Aor51HI AGCGCT 1 cut(s) 16
AoxI GGCC 2 cut(s) 48, 399
ApeKI GCWGC 1 cut(s) 333
ApoI RAATTY 2 cut(s) 116, 308
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 280
AsuNHI GCTAGC 1 cut(s) 11
AvaII GGWCC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 345
BccI CCATC 2 cut(s) 145, 410
BceAI ACGGC 2 cut(s) 60, 274
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 3 cut(s) 170, 210, 292
BcoDI GTCTC 2 cut(s) 42, 178
BfaI CTAG 1 cut(s) 12
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 3 cut(s) 48, 57, 334
BlsI GCNGC 3 cut(s) 49, 58, 335
Bme1390I CCNGG 3 cut(s) 170, 210, 292
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmrFI CCNGG 3 cut(s) 170, 210, 292
BmsI GCATC 2 cut(s) 135, 331
BmtI GCTAGC 1 cut(s) 15
BsaBI GATNNNNATC 1 cut(s) 151
BsaI GGTCTC 2 cut(s) 42, 178
BsaWI WCCGGW 2 cut(s) 103, 222
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 357
Bse8I GATNNNNATC 1 cut(s) 151
BseAI TCCGGA 1 cut(s) 103
BseBI CCWGG 3 cut(s) 170, 210, 292
BseGI GGATG 2 cut(s) 126, 346
BseJI GATNNNNATC 1 cut(s) 151
BseLI CCNNNNNNNGG 2 cut(s) 229, 357
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 345
BsgI GTGCAG 1 cut(s) 239
BshFI GGCC 2 cut(s) 50, 401
BsiSI CCGG 4 cut(s) 104, 223, 281, 305
BslI CCNNNNNNNGG 2 cut(s) 229, 357
BsmAI GTCTC 2 cut(s) 42, 178
BsnI GGCC 2 cut(s) 50, 401
Bso31I GGTCTC 2 cut(s) 42, 178
Bsp13I TCCGGA 1 cut(s) 103
Bsp143I GATC 3 cut(s) 146, 152, 363
BspACI CCGC 4 cut(s) 5, 47, 54, 57
BspANI GGCC 2 cut(s) 50, 401
BspEI TCCGGA 1 cut(s) 103
BspOI GCTAGC 1 cut(s) 15
BspTNI GGTCTC 2 cut(s) 42, 178
BsrBI CCGCTC 1 cut(s) 59
BssMI GATC 3 cut(s) 146, 152, 363
Bst2UI CCWGG 3 cut(s) 170, 210, 292
BstC8I GCNNGC 2 cut(s) 13, 97
BstEII GGTNACC 1 cut(s) 286
BstF5I GGATG 2 cut(s) 126, 346
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 3 cut(s) 149, 155, 366
BstMAI GTCTC 2 cut(s) 42, 178
BstMBI GATC 3 cut(s) 146, 152, 363
BstMWI GCNNNNNNNGC 3 cut(s) 53, 56, 398
BstNI CCWGG 3 cut(s) 170, 210, 292
BstPI GGTNACC 1 cut(s) 286
BstSCI CCNGG 3 cut(s) 168, 208, 290
BstV1I GCAGC 1 cut(s) 345
BsuRI GGCC 2 cut(s) 50, 401
BtsCI GGATG 2 cut(s) 126, 346
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 2 cut(s) 13, 97
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 220
CsiI ACCWGGT 1 cut(s) 290
CviJI RGCY 4 cut(s) 50, 95, 350, 401
CviKI_1 RGCY 4 cut(s) 50, 95, 350, 401
DpnI GATC 3 cut(s) 148, 154, 365
DpnII GATC 3 cut(s) 146, 152, 363
EaeI YGGCCR 1 cut(s) 48
Eco31I GGTCTC 2 cut(s) 42, 178
Eco47I GGWCC 1 cut(s) 220
Eco47III AGCGCT 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 104
Eco91I GGTNACC 1 cut(s) 286
EcoO65I GGTNACC 1 cut(s) 286
EcoRII CCWGG 3 cut(s) 168, 208, 290
FaiI YATR 3 cut(s) 21, 355, 357
FauNDI CATATG 1 cut(s) 355
Fnu4HI GCNGC 3 cut(s) 48, 57, 334
FokI GGATG 2 cut(s) 113, 353
Fsp4HI GCNGC 3 cut(s) 48, 57, 334
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 16
GluI GCNGC 3 cut(s) 48, 57, 334
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 2 cut(s) 50, 401
HapII CCGG 4 cut(s) 104, 223, 281, 305
HhaI GCGC 1 cut(s) 17
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 4 cut(s) 74, 189, 205, 213
HpaII CCGG 4 cut(s) 104, 223, 281, 305
HphI GGTGA 1 cut(s) 280
Hpy188I TCNGA 4 cut(s) 42, 142, 188, 204
Hpy188III TCNNGA 3 cut(s) 104, 150, 406
HpyAV CCTTC 2 cut(s) 79, 391
HpyCH4V TGCA 3 cut(s) 114, 256, 344
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 56, 398
HspAI GCGC 1 cut(s) 15
Kpn2I TCCGGA 1 cut(s) 103
Kzo9I GATC 3 cut(s) 146, 152, 363
LmnI GCTCC 1 cut(s) 232
Lsp1109I GCAGC 1 cut(s) 345
LweI GCATC 2 cut(s) 135, 331
MabI ACCWGGT 1 cut(s) 290
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 2 cut(s) 67, 286
MalI GATC 3 cut(s) 148, 154, 365
MbiI CCGCTC 1 cut(s) 59
MboI GATC 3 cut(s) 146, 152, 363
MboII GAAGA 1 cut(s) 256
MluCI AATT 3 cut(s) 116, 226, 308
MlyI GAGTC 2 cut(s) 183, 214
MnlI CCTC 5 cut(s) 23, 26, 100, 277, 361
MroI TCCGGA 1 cut(s) 103
MspI CCGG 4 cut(s) 104, 223, 281, 305
MspR9I CCNGG 3 cut(s) 170, 210, 292
MvaI CCWGG 3 cut(s) 170, 210, 292
MwoI GCNNNNNNNGC 3 cut(s) 53, 56, 398
NdeI CATATG 1 cut(s) 355
NdeII GATC 3 cut(s) 146, 152, 363
NheI GCTAGC 1 cut(s) 11
NmeAIII GCCGAG 1 cut(s) 102
NmuCI GTSAC 2 cut(s) 67, 286
PfeI GAWTC 2 cut(s) 74, 213
PfoI TCCNGGA 1 cut(s) 208
PkrI GCNGC 3 cut(s) 49, 58, 335
PleI GAGTC 2 cut(s) 183, 213
PpsI GAGTC 2 cut(s) 183, 213
Psp6I CCWGG 3 cut(s) 168, 208, 290
PspEI GGTNACC 1 cut(s) 286
PspGI CCWGG 3 cut(s) 168, 208, 290
PspPI GGNCC 1 cut(s) 220
SatI GCNGC 3 cut(s) 48, 57, 334
Sau3AI GATC 3 cut(s) 146, 152, 363
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 2 cut(s) 183, 214
ScrFI CCNGG 3 cut(s) 170, 210, 292
SetI ASST 5 cut(s) 90, 111, 288, 296, 317
SexAI ACCWGGT 1 cut(s) 290
SfaNI GCATC 2 cut(s) 135, 331
SinI GGWCC 1 cut(s) 220
Sse9I AATT 3 cut(s) 116, 226, 308
SsiI CCGC 4 cut(s) 5, 47, 54, 57
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 3 cut(s) 168, 208, 290
TaqI TCGA 2 cut(s) 151, 366
TaqII GACCGA 1 cut(s) 159
TasI AATT 3 cut(s) 116, 226, 308
TauI GCSGC 2 cut(s) 50, 59
TfiI GAWTC 2 cut(s) 74, 213
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 2 cut(s) 67, 286
TseI GCWGC 1 cut(s) 333
Tsp45I GTSAC 2 cut(s) 67, 286
TspGWI ACGGA 2 cut(s) 55, 86
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 220
XapI RAATTY 2 cut(s) 116, 308
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.