Rorug06G0330300

SWIB/MDM2 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0015561
Physical Location & Seq
Forward (+)
48346096 .. 48346722
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0330300.1

Sequence Viewer

Length: 627 bp
ATGGTGACGAAATCCCAGACCACCAAATCCGGAGAAAGGATCAAAGAGATCAGAAGTCTGAGATCTTTGGAAAAACCAATTCAGAAGAGAAAGTCCACTCTGAAGAAGAGCGCGAGCCAGCTCGAGATTCTCTGCGGTGCGCAGGTTTGCTGCATTTTGGTGGGGCCAACTGGGAATGTTGAGGTCTGGCCGGAAAACGCAGCCGACGCCGTATCCATTATCACCAAGTACAAACAATGCAAAAAGAAAACAAAGCTTTGTAGGGAGGTCAACCGATCCAAGACCGTGGAGCAGTTTGAAGAAAATAAGGGTTTGGCTATGGGTGATGATGACATTGATCAATCTCTGGAGAACTTTGAGGAAGACAAGGGGTTTGATATTGATCAATTTCTGAATAACACTATGGAGAACTTTGAAGATCAAAACAAGTGTATCGATATGGGTGATGATATTGATCAATTTCTCATGAATAACACAATGGAAAATGTTGAACCAAACAACGGTTTTGATACCGATCATGATTTTGATCAATTTCTGAATGATTTTTTTGGTGATACTAATGATCTTAAAGTGGGCTTTCCAGAGTGGTTCAACCAGCAATGCTCACATGCCAACACCAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIB

Protein Analysis

208

Amino Acids

23.81

Weight (kDa)

4.71

Isoelectric Point (pI)

25.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 28 - 63 6.2e-10 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g37377
malus_domestica MD08G1001500.v1.1 MD15G1000800.v1.1
prunus_persica Prupe.1G353500_v2.0.a1
pyrus_communis pycom08g00090 pycom15g00020
rosa_chinensis RchiOBHm_Chr6g0304331
rosa_laevigata RLG00000010989
rosa_multiflora Rmu_co8338167.1_g000001
rosa_roxburghii Rroxscaffold_7G00163830
rosa_rugosa Rorug06G0330300
rosa_samantha Rh6AG443500 Rh6BG458900 Rh6CG456300 Rh6DG443000
rosa_wichuraiana Rw6G038490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 141
Acc36I ACCTGC 1 cut(s) 133
AccII CGCG 1 cut(s) 113
AccIII TCCGGA 1 cut(s) 29
AciI CCGC 1 cut(s) 135
AclWI GGATC 2 cut(s) 47, 270
AcoI YGGCCR 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 122
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 3 cut(s) 36, 500, 618
AgsI TTSAA 4 cut(s) 299, 416, 491, 592
AjnI CCWGG 1 cut(s) 617
AluBI AGCT 2 cut(s) 121, 256
AluI AGCT 2 cut(s) 121, 256
AlwI GGATC 2 cut(s) 47, 270
Ama87I CYCGRG 1 cut(s) 122
Aor13HI TCCGGA 1 cut(s) 29
AoxI GGCC 2 cut(s) 164, 188
ApeKI GCWGC 2 cut(s) 150, 200
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AspLEI GCGC 2 cut(s) 113, 142
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 5 cut(s) 16, 214, 335, 455, 563
AvaI CYCGRG 1 cut(s) 122
BaeI ACNNNNGTAYC 2 cut(s) 415, 448
BbsI GAAGAC 1 cut(s) 369
BbvI GCAGC 2 cut(s) 137, 212
BceAI ACGGC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 619
BciVI GTATCC 1 cut(s) 223
BclI TGATCA 4 cut(s) 337, 382, 454, 526
BfuAI ACCTGC 1 cut(s) 133
BfuI GTATCC 1 cut(s) 223
BglII AGATCT 1 cut(s) 62
BisI GCNGC 2 cut(s) 151, 201
BlsI GCNGC 2 cut(s) 152, 202
Bme1390I CCNGG 1 cut(s) 619
BmeT110I CYCGRG 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 619
BmrI ACTGGG 1 cut(s) 180
BmuI ACTGGG 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 369
BpmI CTGGAG 1 cut(s) 368
Bsa29I ATCGAT 1 cut(s) 435
BsaBI GATNNNNATC 4 cut(s) 381, 453, 513, 525
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 285, 618
BsaWI WCCGGW 1 cut(s) 29
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 500, 618
Bse1I ACTGG 1 cut(s) 175
Bse3DI GCAATG 1 cut(s) 605
Bse8I GATNNNNATC 4 cut(s) 381, 453, 513, 525
BseAI TCCGGA 1 cut(s) 29
BseBI CCWGG 1 cut(s) 619
BseCI ATCGAT 1 cut(s) 435
BseDI CCNNGG 2 cut(s) 285, 618
BseJI GATNNNNATC 4 cut(s) 381, 453, 513, 525
BseLI CCNNNNNNNGG 3 cut(s) 36, 500, 618
BseMI GCAATG 1 cut(s) 605
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 1 cut(s) 175
BseXI GCAGC 2 cut(s) 137, 212
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 2 cut(s) 166, 190
BshVI ATCGAT 1 cut(s) 435
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 2 cut(s) 30, 191
BslI CCNNNNNNNGG 3 cut(s) 36, 500, 618
BsnI GGCC 2 cut(s) 166, 190
BsoBI CYCGRG 1 cut(s) 122
Bsp13I TCCGGA 1 cut(s) 29
BspACI CCGC 1 cut(s) 135
BspANI GGCC 2 cut(s) 166, 190
BspCNI CTCAG 1 cut(s) 51
BspDI ATCGAT 1 cut(s) 435
BspEI TCCGGA 1 cut(s) 29
BspFNI CGCG 1 cut(s) 113
BspHI TCATGA 2 cut(s) 465, 517
BspLI GGNNCC 1 cut(s) 165
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 2 cut(s) 47, 270
BspQI GCTCTTC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 605
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 285, 618
BssNI GRCGYC 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 619
Bst4CI ACNGT 2 cut(s) 286, 503
Bst6I CTCTTC 2 cut(s) 80, 101
BstACI GRCGYC 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 115, 119
BstDEI CTNAG 1 cut(s) 59
BstDSI CCRYGG 1 cut(s) 285
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 2 cut(s) 113, 142
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 1 cut(s) 619
BstNSI RCATGY 1 cut(s) 611
BstSCI CCNGG 1 cut(s) 617
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 137, 212
BstV2I GAAGAC 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 62
BstXI CCANNNNNNTGG 1 cut(s) 286
BstYI RGATCY 1 cut(s) 62
Bsu15I ATCGAT 1 cut(s) 435
BsuI GTATCC 1 cut(s) 223
BsuRI GGCC 2 cut(s) 166, 190
BsuTUI ATCGAT 1 cut(s) 435
BtgI CCRYGG 1 cut(s) 285
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 2 cut(s) 115, 119
CciI TCATGA 2 cut(s) 465, 517
CfoI GCGC 2 cut(s) 113, 142
Cfr13I GGNCC 1 cut(s) 164
ClaI ATCGAT 1 cut(s) 435
CseI GACGC 1 cut(s) 215
Csp6I GTAC 1 cut(s) 229
CviAII CATG 3 cut(s) 466, 518, 608
CviJI RGCY 8 cut(s) 117, 121, 166, 190, 203, 256, 317, 576
CviKI_1 RGCY 8 cut(s) 117, 121, 166, 190, 203, 256, 317, 576
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 1 cut(s) 59
EaeI YGGCCR 1 cut(s) 188
Eam1104I CTCTTC 2 cut(s) 80, 101
EarI CTCTTC 2 cut(s) 80, 101
Eco57I CTGAAG 1 cut(s) 122
Eco88I CYCGRG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 617
FaeI CATG 3 cut(s) 469, 521, 611
FaiI YATR 6 cut(s) 320, 404, 440, 467, 519, 609
FatI CATG 3 cut(s) 465, 517, 607
FbaI TGATCA 4 cut(s) 337, 382, 454, 526
Fnu4HI GCNGC 2 cut(s) 151, 201
Fsp4HI GCNGC 2 cut(s) 151, 201
FspI TGCGCA 1 cut(s) 141
GlaI GCGC 2 cut(s) 112, 141
GluI GCNGC 2 cut(s) 151, 201
GsuI CTGGAG 1 cut(s) 368
HaeIII GGCC 2 cut(s) 166, 190
HapII CCGG 2 cut(s) 30, 191
HgaI GACGC 1 cut(s) 215
HhaI GCGC 2 cut(s) 113, 142
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 3 cut(s) 469, 521, 611
Hin6I GCGC 2 cut(s) 111, 140
HinP1I GCGC 2 cut(s) 111, 140
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 1 cut(s) 127
HpaII CCGG 2 cut(s) 30, 191
HphI GGTGA 5 cut(s) 16, 214, 335, 455, 563
Hpy166II GTNNAC 2 cut(s) 96, 271
Hpy188I TCNGA 6 cut(s) 53, 60, 84, 102, 393, 537
Hpy188III TCNNGA 6 cut(s) 30, 124, 347, 466, 518, 581
Hpy8I GTNNAC 2 cut(s) 96, 271
Hpy99I CGWCG 1 cut(s) 209
HpyCH4III ACNGT 2 cut(s) 286, 503
HpyCH4V TGCA 2 cut(s) 153, 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 1 cut(s) 59
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 3 cut(s) 469, 521, 611
HspAI GCGC 2 cut(s) 111, 140
Kpn2I TCCGGA 1 cut(s) 29
Ksp22I TGATCA 4 cut(s) 337, 382, 454, 526
LguI GCTCTTC 1 cut(s) 101
LmnI GCTCC 1 cut(s) 289
Lsp1109I GCAGC 2 cut(s) 137, 212
MaeIII GTNAC 1 cut(s) 4
MboII GAAGA 6 cut(s) 97, 115, 118, 311, 374, 428
MflI RGATCY 1 cut(s) 62
MluCI AATT 4 cut(s) 78, 386, 458, 530
MnlI CCTC 3 cut(s) 175, 259, 352
MroI TCCGGA 1 cut(s) 29
MseI TTAA 1 cut(s) 567
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 2 cut(s) 30, 191
MspR9I CCNGG 1 cut(s) 619
MvaI CCWGG 1 cut(s) 619
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 206
NlaIII CATG 3 cut(s) 469, 521, 611
NlaIV GGNNCC 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 4
NsbI TGCGCA 1 cut(s) 141
NspI RCATGY 1 cut(s) 611
PaeR7I CTCGAG 1 cut(s) 122
PagI TCATGA 2 cut(s) 465, 517
PciSI GCTCTTC 1 cut(s) 101
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 2 cut(s) 152, 202
Psp6I CCWGG 1 cut(s) 617
PspGI CCWGG 1 cut(s) 617
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 1 cut(s) 164
PsuI RGATCY 1 cut(s) 62
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
RseI CAYNNNNRTG 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 567
SatI GCNGC 2 cut(s) 151, 201
Sau96I GGNCC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 619
SetI ASST 5 cut(s) 123, 147, 186, 258, 270
Sfr274I CTCGAG 1 cut(s) 122
SlaI CTCGAG 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 4 cut(s) 78, 386, 458, 530
SsiI CCGC 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 617
TaaI ACNGT 2 cut(s) 286, 503
TaqI TCGA 2 cut(s) 123, 435
TasI AATT 4 cut(s) 78, 386, 458, 530
TatI WGTACW 1 cut(s) 228
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 2 cut(s) 150, 200
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 482
XceI RCATGY 1 cut(s) 611
XhoI CTCGAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.