Rmu_co8338167.1_g000001

SWIB/MDM2 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8338167.1
OG0015561
Physical Location & Seq
Reverse (-)
1 .. 969
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8338167.1_g000001.1.cds

Sequence Viewer

Length: 285 bp
atggctgttgctagcgctcacaggataagaggagggtctctgacggcggctgccgccgctctctccgtcacggaatcaaaactgaaggtcaaggcttgctctccggaggtctgcaaattcctcggcatccctgacccttctgaccgatctcgatctcccactgctctcttaatttccaagttcatcagactccacaacaatcagagccctggaatcaaggaccggaattgggagcagaacttgaagacattattgcacggcaaagacagagttgggttgccggag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIB

Protein Analysis

95

Amino Acids

10.27

Weight (kDa)

10.02

Isoelectric Point (pI)

47.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g37377
malus_domestica MD08G1001500.v1.1 MD15G1000800.v1.1
prunus_persica Prupe.1G353500_v2.0.a1
pyrus_communis pycom08g00090 pycom15g00020
rosa_chinensis RchiOBHm_Chr6g0304331
rosa_laevigata RLG00000010989
rosa_multiflora Rmu_co8338167.1_g000001
rosa_roxburghii Rroxscaffold_7G00163830
rosa_rugosa Rorug06G0330300
rosa_samantha Rh6AG443500 Rh6BG458900 Rh6CG456300 Rh6DG443000
rosa_wichuraiana Rw6G038490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 59
AccIII TCCGGA 1 cut(s) 103
AciI CCGC 3 cut(s) 47, 54, 57
AcsI RAATTY 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 104
AfeI AGCGCT 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 1 cut(s) 244
AjnI CCWGG 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 42
Aor13HI TCCGGA 1 cut(s) 103
Aor51HI AGCGCT 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 116
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 220
AsuNHI GCTAGC 1 cut(s) 11
AvaII GGWCC 1 cut(s) 220
BanII GRGCYC 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 37
BceAI ACGGC 2 cut(s) 60, 274
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 1 cut(s) 12
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 4 cut(s) 48, 51, 54, 57
BlsI GCNGC 4 cut(s) 49, 52, 55, 58
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 135
BmtI GCTAGC 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 251
BsaBI GATNNNNATC 1 cut(s) 151
BsaI GGTCTC 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 121, 208
BsaWI WCCGGW 2 cut(s) 103, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse8I GATNNNNATC 1 cut(s) 151
BseAI TCCGGA 1 cut(s) 103
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 121, 208
BseGI GGATG 1 cut(s) 126
BseJI GATNNNNATC 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 37
BsiSI CCGG 3 cut(s) 104, 223, 281
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 42
Bso31I GGTCTC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 209
Bsp13I TCCGGA 1 cut(s) 103
Bsp143I GATC 2 cut(s) 146, 152
BspACI CCGC 3 cut(s) 47, 54, 57
BspEI TCCGGA 1 cut(s) 103
BspOI GCTAGC 1 cut(s) 15
BspTNI GGTCTC 1 cut(s) 42
BsrBI CCGCTC 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 121, 208
BssMI GATC 2 cut(s) 146, 152
Bst2UI CCWGG 1 cut(s) 210
BstC8I GCNNGC 2 cut(s) 13, 97
BstF5I GGATG 1 cut(s) 126
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 2 cut(s) 149, 155
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 2 cut(s) 146, 152
BstMWI GCNNNNNNNGC 2 cut(s) 53, 56
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 251
BtsCI GGATG 1 cut(s) 126
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 2 cut(s) 13, 97
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 220
CviJI RGCY 4 cut(s) 5, 50, 95, 207
CviKI_1 RGCY 4 cut(s) 5, 50, 95, 207
DpnI GATC 2 cut(s) 148, 154
DpnII GATC 2 cut(s) 146, 152
Eco24I GRGCYC 1 cut(s) 209
Eco31I GGTCTC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 220
Eco47III AGCGCT 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 209
Fnu4HI GCNGC 4 cut(s) 48, 51, 54, 57
FokI GGATG 1 cut(s) 113
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 4 cut(s) 48, 51, 54, 57
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 16
GluI GCNGC 4 cut(s) 48, 51, 54, 57
HaeII RGCGCY 1 cut(s) 18
HapII CCGG 3 cut(s) 104, 223, 281
HhaI GCGC 1 cut(s) 17
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 3 cut(s) 74, 189, 213
HpaII CCGG 3 cut(s) 104, 223, 281
Hpy188I TCNGA 4 cut(s) 42, 142, 188, 204
Hpy188III TCNNGA 2 cut(s) 104, 150
HpyAV CCTTC 2 cut(s) 79, 147
HpyCH4V TGCA 2 cut(s) 114, 256
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 56
HspAI GCGC 1 cut(s) 15
Kpn2I TCCGGA 1 cut(s) 103
Kzo9I GATC 2 cut(s) 146, 152
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 6 cut(s) 7, 117, 144, 195, 222, 236
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 135
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 148, 154
MbiI CCGCTC 1 cut(s) 59
MboI GATC 2 cut(s) 146, 152
MboII GAAGA 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 3 cut(s) 116, 171, 226
MlyI GAGTC 1 cut(s) 183
MnlI CCTC 4 cut(s) 23, 26, 100, 131
MroI TCCGGA 1 cut(s) 103
MseI TTAA 1 cut(s) 170
MspI CCGG 3 cut(s) 104, 223, 281
MspR9I CCNGG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 53, 56
NdeII GATC 2 cut(s) 146, 152
NheI GCTAGC 1 cut(s) 11
NmeAIII GCCGAG 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 67
PfeI GAWTC 2 cut(s) 74, 213
PkrI GCNGC 4 cut(s) 49, 52, 55, 58
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspPI GGNCC 1 cut(s) 220
SaqAI TTAA 1 cut(s) 170
SatI GCNGC 4 cut(s) 48, 51, 54, 57
Sau3AI GATC 2 cut(s) 146, 152
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 1 cut(s) 209
SetI ASST 2 cut(s) 90, 111
SfaNI GCATC 1 cut(s) 135
SinI GGWCC 1 cut(s) 220
Sse9I AATT 3 cut(s) 116, 171, 226
SsiI CCGC 3 cut(s) 47, 54, 57
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 208
TaqI TCGA 1 cut(s) 151
TaqII GACCGA 1 cut(s) 159
TasI AATT 3 cut(s) 116, 171, 226
TauI GCSGC 3 cut(s) 50, 56, 59
TfiI GAWTC 2 cut(s) 74, 213
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 172
TspGWI ACGGA 2 cut(s) 55, 86
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 220
XapI RAATTY 1 cut(s) 116
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.