Prupe.1G353500_v2.0.a1

SWIB/MDM2 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015561
Physical Location & Seq
Forward (+)
32879333 .. 32880116
784 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G353500.1

Sequence Viewer

Length: 411 bp
ATGGCGGGTGCTAGTGCTGCTAGGGCAAGTAGATCAGTAATGGCTGCGGTTATTCCGGAGTCGAAAGTAATTGCGGCGAAAGTGAAGACAAAGACTTGTTGTTCAGAGTTGTGCAAGTTCCTTGGCATCCCTGAACGCACTCGCTCTCCCACCGCACTCTTAATTTCCAGGTTCATTAGTCTCTACAACCATCAGAGTCCCGGTATCAAGGACCGTAATTGGGAGGAGAACTTGAAGACCTTATTGCATGGGAAAAACAGAGTTGGACTCTCTGAAATCACCAGATTGCTCTCCCCCGAATTCACCTATTCTCGTATCAAAAGCACCAGCGCACCCACTGCCATCGCTGACCAGAAACAGCACGATCTCAATAAATCCAAGAAAACCAAAGGGAAGATGAAGAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIB

Protein Analysis

137

Amino Acids

15.03

Weight (kDa)

10.24

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g37377
malus_domestica MD08G1001500.v1.1 MD15G1000800.v1.1
prunus_persica Prupe.1G353500_v2.0.a1
pyrus_communis pycom08g00090 pycom15g00020
rosa_chinensis RchiOBHm_Chr6g0304331
rosa_laevigata RLG00000010989
rosa_multiflora Rmu_co8338167.1_g000001
rosa_roxburghii Rroxscaffold_7G00163830
rosa_rugosa Rorug06G0330300
rosa_samantha Rh6AG443500 Rh6BG458900 Rh6CG456300 Rh6DG443000
rosa_wichuraiana Rw6G038490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 4 cut(s) 5, 47, 74, 153
AcsI RAATTY 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 220
AgsI TTSAA 1 cut(s) 235
AjnI CCWGG 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 185
Aor13HI TCCGGA 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 17, 44
ApoI RAATTY 1 cut(s) 299
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 211
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 2 cut(s) 271, 295
AvaII GGWCC 1 cut(s) 211
BbsI GAAGAC 2 cut(s) 92, 242
BbvI GCAGC 2 cut(s) 4, 31
BccI CCATC 2 cut(s) 198, 350
BciT130I CCWGG 1 cut(s) 169
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 2 cut(s) 12, 21
BisI GCNGC 3 cut(s) 18, 45, 75
BlsI GCNGC 3 cut(s) 19, 46, 76
Bme1390I CCNGG 2 cut(s) 169, 201
Bme18I GGWCC 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 211
BmrFI CCNGG 2 cut(s) 169, 201
BmsI GCATC 1 cut(s) 135
BpiI GAAGAC 2 cut(s) 92, 242
BplI GAGNNNNNCTC 2 cut(s) 252, 284
BpuMI CCSGG 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 121
BsaWI WCCGGW 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 1 cut(s) 220
BseAI TCCGGA 1 cut(s) 55
BseBI CCWGG 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 2 cut(s) 4, 31
BsiSI CCGG 2 cut(s) 56, 201
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 183
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 2 cut(s) 32, 364
BspACI CCGC 4 cut(s) 5, 47, 74, 153
BspEI TCCGGA 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 2 cut(s) 32, 364
BssT1I CCWWGG 1 cut(s) 121
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 215
BstAPI GCANNNNNTGC 1 cut(s) 338
BstF5I GGATG 1 cut(s) 126
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 2 cut(s) 35, 367
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 2 cut(s) 32, 364
BstMWI GCNNNNNNNGC 3 cut(s) 17, 23, 338
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 2 cut(s) 167, 199
BstV1I GCAGC 2 cut(s) 4, 31
BstV2I GAAGAC 2 cut(s) 92, 242
BtgZI GCGATG 1 cut(s) 328
BtsCI GGATG 1 cut(s) 126
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 1 cut(s) 336
CfoI GCGC 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 211
CviAII CATG 1 cut(s) 248
CviJI RGCY 1 cut(s) 44
CviKI_1 RGCY 1 cut(s) 44
DpnI GATC 2 cut(s) 34, 366
DpnII GATC 2 cut(s) 32, 364
Eco130I CCWWGG 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 211
EcoRI GAATTC 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 167
EcoT14I CCWWGG 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 1 cut(s) 251
FaiI YATR 1 cut(s) 249
FaqI GGGAC 1 cut(s) 183
FatI CATG 1 cut(s) 247
Fnu4HI GCNGC 3 cut(s) 18, 45, 75
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 3 cut(s) 18, 45, 75
FspBI CTAG 2 cut(s) 12, 21
GlaI GCGC 1 cut(s) 331
GluI GCNGC 3 cut(s) 18, 45, 75
HapII CCGG 2 cut(s) 56, 201
HhaI GCGC 1 cut(s) 332
Hin1II CATG 1 cut(s) 251
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HinfI GANTC 3 cut(s) 59, 196, 267
HpaII CCGG 2 cut(s) 56, 201
HphI GGTGA 2 cut(s) 271, 295
Hpy188I TCNGA 3 cut(s) 106, 195, 274
Hpy188III TCNNGA 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4V TGCA 2 cut(s) 114, 247
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 23, 338
Hsp92II CATG 1 cut(s) 251
HspAI GCGC 1 cut(s) 330
Kpn2I TCCGGA 1 cut(s) 55
Kzo9I GATC 2 cut(s) 32, 364
LpnPI CCDG 8 cut(s) 69, 144, 154, 181, 214, 295, 340, 365
Lsp1109I GCAGC 2 cut(s) 4, 31
LweI GCATC 1 cut(s) 135
MaeI CTAG 2 cut(s) 12, 21
MalI GATC 2 cut(s) 34, 366
MboI GATC 2 cut(s) 32, 364
MboII GAAGA 3 cut(s) 97, 247, 406
MluCI AATT 4 cut(s) 69, 162, 217, 299
MlyI GAGTC 3 cut(s) 68, 205, 261
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 1 cut(s) 217
MroI TCCGGA 1 cut(s) 55
MseI TTAA 1 cut(s) 161
MspI CCGG 2 cut(s) 56, 201
MspR9I CCNGG 2 cut(s) 169, 201
MvaI CCWGG 1 cut(s) 169
MwoI GCNNNNNNNGC 3 cut(s) 17, 23, 338
NciI CCSGG 1 cut(s) 201
NdeII GATC 2 cut(s) 32, 364
NlaIII CATG 1 cut(s) 251
PkrI GCNGC 3 cut(s) 19, 46, 76
PleI GAGTC 3 cut(s) 67, 204, 261
PpsI GAGTC 3 cut(s) 67, 204, 261
Psp6I CCWGG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 167
PspPI GGNCC 1 cut(s) 211
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 3 cut(s) 18, 45, 75
Sau3AI GATC 2 cut(s) 32, 364
Sau96I GGNCC 1 cut(s) 211
SchI GAGTC 3 cut(s) 68, 205, 261
ScrFI CCNGG 2 cut(s) 169, 201
SetI ASST 3 cut(s) 173, 242, 308
SfaNI GCATC 1 cut(s) 135
SinI GGWCC 1 cut(s) 211
Sse9I AATT 4 cut(s) 69, 162, 217, 299
SsiI CCGC 4 cut(s) 5, 47, 74, 153
SspMI CTAG 2 cut(s) 12, 21
StyD4I CCNGG 2 cut(s) 167, 199
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 1 cut(s) 215
TaqI TCGA 1 cut(s) 62
TasI AATT 4 cut(s) 69, 162, 217, 299
TauI GCSGC 1 cut(s) 77
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 1 cut(s) 343
TseI GCWGC 2 cut(s) 17, 44
TspDTI ATGAA 1 cut(s) 163
TspRI CASTG 1 cut(s) 343
VpaK11BI GGWCC 1 cut(s) 211
XapI RAATTY 1 cut(s) 299
XspI CTAG 2 cut(s) 12, 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.