RLG00000010989

SWIB/MDM2 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015561
Physical Location & Seq
Reverse (-)
5851560 .. 5852043
484 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010989

Sequence Viewer

Length: 411 bp
ATGGCTGTTGCTAGCGCTCACAGGATAAGAGGAGGGTCTCTGACGGCGGCTGCCGCCGCTCTCTCCGTCACGGAATCAAAACTGAAGGTCAAGGGTTGCTCTCCGGAGGTCTGCAAATTCCTCGGCATCCCGGACCCTTCTGACCGATCTCGATCTCCCACTGCTCTCTTAATTTCCAAGTTCATCAGACTCCACAACAATCAGAGTCCTGGAATCAAGGACCGGAATTGGGAGCAGAACTTGAAGACATTATTGCACGGCAAAGACAGAGTTGGGTTGCCGGAGGTCACCAGATTGCTCTCACCGGAATTTACCTATTCCACTATCAAAAGCACCGATGCAACAGCCACTTTTGGGCAGATCGAGGCTAACAAATCCACGAAAATAACTGGGAAGGCCATTAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIB

Protein Analysis

137

Amino Acids

14.69

Weight (kDa)

10.07

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g37377
malus_domestica MD08G1001500.v1.1 MD15G1000800.v1.1
prunus_persica Prupe.1G353500_v2.0.a1
pyrus_communis pycom08g00090 pycom15g00020
rosa_chinensis RchiOBHm_Chr6g0304331
rosa_laevigata RLG00000010989
rosa_multiflora Rmu_co8338167.1_g000001
rosa_roxburghii Rroxscaffold_7G00163830
rosa_rugosa Rorug06G0330300
rosa_samantha Rh6AG443500 Rh6BG458900 Rh6CG456300 Rh6DG443000
rosa_wichuraiana Rw6G038490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 59
AccIII TCCGGA 1 cut(s) 103
AciI CCGC 3 cut(s) 47, 54, 57
AcsI RAATTY 2 cut(s) 116, 308
AcuI CTGAAG 1 cut(s) 104
AfeI AGCGCT 1 cut(s) 16
AfiI CCNNNNNNNGG 2 cut(s) 229, 354
AgsI TTSAA 1 cut(s) 244
AjnI CCWGG 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 42
Aor13HI TCCGGA 1 cut(s) 103
Aor51HI AGCGCT 1 cut(s) 16
AoxI GGCC 1 cut(s) 396
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 2 cut(s) 116, 308
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 133, 220
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 2 cut(s) 280, 294
AsuNHI GCTAGC 1 cut(s) 11
AvaII GGWCC 2 cut(s) 133, 220
BbsI GAAGAC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 37
BceAI ACGGC 2 cut(s) 60, 274
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 1 cut(s) 210
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 1 cut(s) 12
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 4 cut(s) 48, 51, 54, 57
BlsI GCNGC 4 cut(s) 49, 52, 55, 58
Bme1390I CCNGG 2 cut(s) 131, 210
Bme18I GGWCC 2 cut(s) 133, 220
BmgT120I GGNCC 2 cut(s) 133, 220
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 2 cut(s) 131, 210
BmrI ACTGGG 1 cut(s) 399
BmsI GCATC 2 cut(s) 135, 328
BmtI GCTAGC 1 cut(s) 15
BmuI ACTGGG 1 cut(s) 399
BpiI GAAGAC 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 151
BsaI GGTCTC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 121
BsaWI WCCGGW 3 cut(s) 103, 222, 304
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 354
Bse1I ACTGG 1 cut(s) 394
Bse8I GATNNNNATC 1 cut(s) 151
BseAI TCCGGA 1 cut(s) 103
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 1 cut(s) 126
BseJI GATNNNNATC 1 cut(s) 151
BseLI CCNNNNNNNGG 2 cut(s) 229, 354
BseNI ACTGG 1 cut(s) 394
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 1 cut(s) 398
BsiSI CCGG 5 cut(s) 104, 131, 223, 281, 305
BslI CCNNNNNNNGG 2 cut(s) 229, 354
BsmAI GTCTC 1 cut(s) 42
BsnI GGCC 1 cut(s) 398
Bso31I GGTCTC 1 cut(s) 42
Bsp13I TCCGGA 1 cut(s) 103
Bsp143I GATC 3 cut(s) 146, 152, 360
BspACI CCGC 3 cut(s) 47, 54, 57
BspANI GGCC 1 cut(s) 398
BspEI TCCGGA 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 135
BspOI GCTAGC 1 cut(s) 15
BspTNI GGTCTC 1 cut(s) 42
BsrBI CCGCTC 1 cut(s) 59
BsrI ACTGG 1 cut(s) 394
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 3 cut(s) 146, 152, 360
Bst2UI CCWGG 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 13
BstEII GGTNACC 1 cut(s) 286
BstF5I GGATG 1 cut(s) 126
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 3 cut(s) 149, 155, 363
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 3 cut(s) 146, 152, 360
BstMWI GCNNNNNNNGC 2 cut(s) 53, 56
BstNI CCWGG 1 cut(s) 210
BstPI GGTNACC 1 cut(s) 286
BstSCI CCNGG 2 cut(s) 129, 208
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 251
BsuRI GGCC 1 cut(s) 398
BtsCI GGATG 1 cut(s) 126
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 13
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 2 cut(s) 133, 220
CviJI RGCY 5 cut(s) 5, 50, 347, 368, 398
CviKI_1 RGCY 5 cut(s) 5, 50, 347, 368, 398
DpnI GATC 3 cut(s) 148, 154, 362
DpnII GATC 3 cut(s) 146, 152, 360
Eco31I GGTCTC 1 cut(s) 42
Eco47I GGWCC 2 cut(s) 133, 220
Eco47III AGCGCT 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 104
Eco91I GGTNACC 1 cut(s) 286
EcoO65I GGTNACC 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 208
Fnu4HI GCNGC 4 cut(s) 48, 51, 54, 57
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 4 cut(s) 48, 51, 54, 57
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 16
GluI GCNGC 4 cut(s) 48, 51, 54, 57
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 1 cut(s) 398
HapII CCGG 5 cut(s) 104, 131, 223, 281, 305
HhaI GCGC 1 cut(s) 17
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 4 cut(s) 74, 189, 205, 213
HpaII CCGG 5 cut(s) 104, 131, 223, 281, 305
HphI GGTGA 2 cut(s) 280, 294
Hpy188I TCNGA 4 cut(s) 42, 142, 188, 204
Hpy188III TCNNGA 2 cut(s) 104, 150
HpyAV CCTTC 3 cut(s) 79, 147, 388
HpyCH4V TGCA 3 cut(s) 114, 256, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 56
HspAI GCGC 1 cut(s) 15
Kpn2I TCCGGA 1 cut(s) 103
Kzo9I GATC 3 cut(s) 146, 152, 360
LmnI GCTCC 1 cut(s) 232
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 2 cut(s) 135, 328
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 2 cut(s) 67, 286
MalI GATC 3 cut(s) 148, 154, 362
MbiI CCGCTC 1 cut(s) 59
MboI GATC 3 cut(s) 146, 152, 360
MboII GAAGA 1 cut(s) 256
MluCI AATT 4 cut(s) 116, 171, 226, 308
MlyI GAGTC 2 cut(s) 183, 214
MnlI CCTC 6 cut(s) 23, 26, 100, 131, 277, 358
MroI TCCGGA 1 cut(s) 103
MseI TTAA 2 cut(s) 170, 402
MspI CCGG 5 cut(s) 104, 131, 223, 281, 305
MspR9I CCNGG 2 cut(s) 131, 210
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 53, 56
NciI CCSGG 1 cut(s) 131
NdeII GATC 3 cut(s) 146, 152, 360
NheI GCTAGC 1 cut(s) 11
NlaIV GGNNCC 1 cut(s) 135
NmeAIII GCCGAG 1 cut(s) 102
NmuCI GTSAC 2 cut(s) 67, 286
PfeI GAWTC 2 cut(s) 74, 213
PfoI TCCNGGA 2 cut(s) 129, 208
PkrI GCNGC 4 cut(s) 49, 52, 55, 58
PleI GAGTC 2 cut(s) 183, 213
PpsI GAGTC 2 cut(s) 183, 213
Psp6I CCWGG 1 cut(s) 208
PspEI GGTNACC 1 cut(s) 286
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 2 cut(s) 133, 220
SaqAI TTAA 2 cut(s) 170, 402
SatI GCNGC 4 cut(s) 48, 51, 54, 57
Sau3AI GATC 3 cut(s) 146, 152, 360
Sau96I GGNCC 2 cut(s) 133, 220
SchI GAGTC 2 cut(s) 183, 214
ScrFI CCNGG 2 cut(s) 131, 210
SetI ASST 4 cut(s) 90, 111, 288, 317
SfaNI GCATC 2 cut(s) 135, 328
SinI GGWCC 2 cut(s) 133, 220
Sse9I AATT 4 cut(s) 116, 171, 226, 308
SsiI CCGC 3 cut(s) 47, 54, 57
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 2 cut(s) 129, 208
TaqI TCGA 2 cut(s) 151, 363
TaqII GACCGA 1 cut(s) 159
TasI AATT 4 cut(s) 116, 171, 226, 308
TauI GCSGC 3 cut(s) 50, 56, 59
TfiI GAWTC 2 cut(s) 74, 213
Tru1I TTAA 2 cut(s) 170, 402
Tru9I TTAA 2 cut(s) 170, 402
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 2 cut(s) 67, 286
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 2 cut(s) 67, 286
TspDTI ATGAA 1 cut(s) 172
TspGWI ACGGA 2 cut(s) 55, 86
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 2 cut(s) 133, 220
XapI RAATTY 2 cut(s) 116, 308
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.