pycom08g00090

SWIB/MDM2 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0015561
Physical Location & Seq
Forward (+)
110497 .. 111335
839 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g00090.1

Sequence Viewer

Length: 432 bp
ATGGCGGGTGGTAGCGGTGCCGCTAGGGCAAGCCGGTCGCTAATGGCGGGTGGCGGTTTCTCAGAGGCGAAAGTAATAGCAGCGAAAGTGAAGACGAAAACTTCAAAGTCAGAGTTGTGCAAGTTTCTGGGGATCCCAGAGCGCTCTCGCTCTCCCACTGCACTCTTAATTTCCAAGTTCATTGGCCTCTACAACCATCAGAGTCCCGGTATCAAGGACCGTAATTGGGAGGAGAACTTGAAGACGTTATTACATGGAAAATCGAGGGTTGGGGTCGCTGAAATCACCCGATTGCTCTCCCAAGAATTCACCTATTCTCGCATCAAAAGCACTGCCACATCCTCCGCCACCCCCACGCATTTGGCTGACCAGAAACTACAAGATTCCAATAAATCCAAGAAGGCCAAAGGCAAGGCCTCCAAAAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIB

Protein Analysis

144

Amino Acids

15.38

Weight (kDa)

10.38

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g37377
malus_domestica MD08G1001500.v1.1 MD15G1000800.v1.1
prunus_persica Prupe.1G353500_v2.0.a1
pyrus_communis pycom08g00090 pycom15g00020
rosa_chinensis RchiOBHm_Chr6g0304331
rosa_laevigata RLG00000010989
rosa_multiflora Rmu_co8338167.1_g000001
rosa_roxburghii Rroxscaffold_7G00163830
rosa_rugosa Rorug06G0330300
rosa_samantha Rh6AG443500 Rh6BG458900 Rh6CG456300 Rh6DG443000
rosa_wichuraiana Rw6G038490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AciI CCGC 6 cut(s) 5, 15, 21, 47, 54, 345
AclWI GGATC 2 cut(s) 127, 140
AcsI RAATTY 1 cut(s) 305
AfeI AGCGCT 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 2 cut(s) 105, 241
AlwI GGATC 2 cut(s) 127, 140
Aor51HI AGCGCT 1 cut(s) 143
AoxI GGCC 3 cut(s) 184, 402, 414
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 305
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 207
AsuHPI GGTGA 2 cut(s) 277, 301
AvaII GGWCC 1 cut(s) 217
BamHI GGATCC 1 cut(s) 132
BanI GGYRCC 1 cut(s) 17
BbsI GAAGAC 2 cut(s) 98, 248
BbvI GCAGC 1 cut(s) 92
BccI CCATC 1 cut(s) 204
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BcnI CCSGG 1 cut(s) 207
BfaI CTAG 1 cut(s) 24
BfoI RGCGCY 1 cut(s) 145
BglI GCCNNNNNGGC 1 cut(s) 26
BisI GCNGC 2 cut(s) 21, 81
BlsI GCNGC 2 cut(s) 22, 82
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 2 cut(s) 19, 134
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 330
BpiI GAAGAC 2 cut(s) 98, 248
BpuMI CCSGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse118I RCCGGY 1 cut(s) 33
BseGI GGATG 1 cut(s) 338
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMII CTCAG 1 cut(s) 75
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 1 cut(s) 92
BsgI GTGCAG 1 cut(s) 144
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 3 cut(s) 186, 404, 416
BshNI GGYRCC 1 cut(s) 17
BsiEI CGRYCG 1 cut(s) 38
BsiSI CCGG 2 cut(s) 34, 207
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 189
BsnI GGCC 3 cut(s) 186, 404, 416
Bsp143I GATC 1 cut(s) 132
BspACI CCGC 6 cut(s) 5, 15, 21, 47, 54, 345
BspANI GGCC 3 cut(s) 186, 404, 416
BspCNI CTCAG 1 cut(s) 74
BspLI GGNNCC 2 cut(s) 19, 134
BspPI GGATC 2 cut(s) 127, 140
BspT107I GGYRCC 1 cut(s) 17
BsrFI RCCGGY 1 cut(s) 33
BssAI RCCGGY 1 cut(s) 33
BssMI GATC 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 61
BstF5I GGATG 1 cut(s) 338
BstH2I RGCGCY 1 cut(s) 145
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 2 cut(s) 26, 327
BstSCI CCNGG 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 92
BstV2I GAAGAC 2 cut(s) 98, 248
BstX2I RGATCY 1 cut(s) 132
BstXI CCANNNNNNTGG 1 cut(s) 361
BstYI RGATCY 1 cut(s) 132
BsuRI GGCC 3 cut(s) 186, 404, 416
BtsCI GGATG 1 cut(s) 338
BtsI GCAGTG 2 cut(s) 156, 330
BtsIMutI CAGTG 2 cut(s) 156, 330
Cac8I GCNNGC 1 cut(s) 31
CfoI GCGC 1 cut(s) 144
Cfr10I RCCGGY 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 217
CviAII CATG 1 cut(s) 254
CviJI RGCY 5 cut(s) 33, 186, 365, 404, 416
CviKI_1 RGCY 5 cut(s) 33, 186, 365, 404, 416
DdeI CTNAG 1 cut(s) 61
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
EciI GGCGGA 1 cut(s) 334
Eco147I AGGCCT 1 cut(s) 416
Eco47I GGWCC 1 cut(s) 217
Eco47III AGCGCT 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 305
FaeI CATG 1 cut(s) 257
FaiI YATR 1 cut(s) 255
FaqI GGGAC 1 cut(s) 189
FatI CATG 1 cut(s) 253
FauI CCCGC 1 cut(s) 40
Fnu4HI GCNGC 2 cut(s) 21, 81
FokI GGATG 1 cut(s) 325
Fsp4HI GCNGC 2 cut(s) 21, 81
FspBI CTAG 1 cut(s) 24
GlaI GCGC 1 cut(s) 143
GluI GCNGC 2 cut(s) 21, 81
HaeII RGCGCY 1 cut(s) 145
HaeIII GGCC 3 cut(s) 186, 404, 416
HapII CCGG 2 cut(s) 34, 207
HhaI GCGC 1 cut(s) 144
Hin1II CATG 1 cut(s) 257
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HinfI GANTC 2 cut(s) 202, 383
HpaII CCGG 2 cut(s) 34, 207
HphI GGTGA 2 cut(s) 277, 301
Hpy188I TCNGA 3 cut(s) 64, 112, 201
HpyAV CCTTC 1 cut(s) 394
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 2 cut(s) 120, 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 327
HpyF3I CTNAG 1 cut(s) 61
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 1 cut(s) 257
HspAI GCGC 1 cut(s) 142
Kzo9I GATC 1 cut(s) 132
LpnPI CCDG 5 cut(s) 47, 113, 150, 220, 383
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 1 cut(s) 330
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 245
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 2 cut(s) 103, 253
MflI RGATCY 1 cut(s) 132
MluCI AATT 3 cut(s) 168, 223, 305
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 6 cut(s) 58, 197, 223, 258, 352, 427
MseI TTAA 1 cut(s) 167
MspI CCGG 2 cut(s) 34, 207
MspR9I CCNGG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 26, 327
NciI CCSGG 1 cut(s) 207
NdeII GATC 1 cut(s) 132
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 2 cut(s) 19, 134
PceI AGGCCT 1 cut(s) 416
PfeI GAWTC 1 cut(s) 383
PkrI GCNGC 2 cut(s) 22, 82
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 19, 134
PspPI GGNCC 1 cut(s) 217
PsuI RGATCY 1 cut(s) 132
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 2 cut(s) 21, 81
Sau3AI GATC 1 cut(s) 132
Sau96I GGNCC 1 cut(s) 217
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 207
SetI ASST 2 cut(s) 248, 314
SfaNI GCATC 1 cut(s) 330
SinI GGWCC 1 cut(s) 217
Sse9I AATT 3 cut(s) 168, 223, 305
SseBI AGGCCT 1 cut(s) 416
SsiI CCGC 6 cut(s) 5, 15, 21, 47, 54, 345
SspMI CTAG 1 cut(s) 24
StuI AGGCCT 1 cut(s) 416
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 1 cut(s) 221
TaiI ACGT 1 cut(s) 248
TaqI TCGA 1 cut(s) 263
TasI AATT 3 cut(s) 168, 223, 305
TauI GCSGC 1 cut(s) 23
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 2 cut(s) 163, 337
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 169
TspRI CASTG 2 cut(s) 163, 337
VpaK11BI GGWCC 1 cut(s) 217
XapI RAATTY 1 cut(s) 305
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.