Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015179

Physical Location & Seq

Genomic Coordinates Forward (+)

27438202 .. 27441612

Gene Structure 3411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGTCGCCGGACTTCGATCCTGAGAAATTCGCTTCTCTCAAATTCCCCGAGACGCCCTACACTTATTCCGAGAGAGATGTAGCTCTCTACGCGTTAGGTGTTGGAGCTTGCGCTAGAGATGCGGTAGATTCTGATGAACTTAAATACGTTTACCACGAGAATGGGCAGAAATCTATCCAGGTGTTGCCGACATTTACTGCTCTGTTTTCATTAGGAAGTCTGAAGTTTCATGTACCGGGGTTGGATTTTGATCCGCGGCTTTTGCTGCACGGACAGCAGTACATAGAGATATACAAGCCACTTCCTACAAGTGCTTCTCTAAACAATACAGTTAGTCTTGCTGGACTCCACGATAAAGGAAAAGCTGCTGTCGTTGAGATGGAAACCAAAAGTTACGATAAAGATTCTGGTGCACTGTTATGCATGAATCGGACAACTGTCTTTCTGCGAGGTGCTGGTGGCTTCTCAAAATCGTCTCATCCATTTTCATATTCAAACTATCCAAAGGACCAGGGTTCCTCTGTGAAAATTCCAAAAGGTCAACCTTTTGCAGTTTTTGAAGATTGTACACTACCATCTCAGGCGTTGCTGTATAGGCTATCTGGGGACTATAATCCTCTGCATTCAGATCCCATGATTGCAAAAATTGCAGGATTCACGCTGCCAATACTCCATGGGTTGTGCACACTTGGATTTGCAGTCAGGGCAATTATCAAATGTATATGCCGAGGAGATTCAACCAAGGTGAAATGCATTTCAGGCCGATTCCTTTTACATGTTTACCCTGGGGAAACATTGGTCACTGAAATGTGGCTCGAAGGCTCAAGGGTAATATATCAAACAAAGGTGAAAGAACGAAGCCGGGCAGTGCTGTCTGGCTATGTGGATCTCCACGGTTTATCTTCATTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033542 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:0080023 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MaoC_dehydrat_N MaoC_dehydratas

Protein Analysis

305

Amino Acids

33.5

Weight (kDa)

8.07

Isoelectric Point (pI)

30.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFE-2_hydrat-2_N	PF22622	20 - 151	8.3e-40	MFE-2 hydratase 2 N-terminal domain
MaoC_dehydratas	PF01575	189 - 288	1.1e-24	MaoC like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76150
fragaria_vesca	FvH4_2g37800 FvH4_2g37800
malus_domestica	MD08G1005200.v1.1
prunus_persica	Prupe.1G357300_v2.0.a1 Prupe.1G357300_v2.0.a1
pyrus_communis	pycom08g00420
rosa_chinensis	RchiOBHm_Chr6g0303911
rosa_laevigata	RLG00000011035
rosa_roxburghii	Rroxscaffold_7G00164270
rosa_rugosa	Rorug06G0325900
rosa_samantha	Rh6AG440100 Rh6BG462900 Rh6CG452400 Rh6DG439400
rosa_wichuraiana	Rw6G038110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	92, 256
AciI	CCGC	3 cut(s)	122, 254, 256
AclWI	GGATC	4 cut(s)	11, 245, 623, 894
AcsI	RAATTY	3 cut(s)	26, 41, 528
AcuI	CTGAAG	1 cut(s)	242
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	3 cut(s)	234, 281, 568
AflIII	ACRYGT	2 cut(s)	90, 775
AgsI	TTSAA	3 cut(s)	495, 560, 738
AjnI	CCWGG	3 cut(s)	177, 510, 784
AluBI	AGCT	3 cut(s)	83, 107, 365
AluI	AGCT	3 cut(s)	83, 107, 365
Alw21I	GWGCWC	2 cut(s)	415, 686
Alw26I	GTCTC	2 cut(s)	44, 480
Alw44I	GTGCAC	2 cut(s)	411, 682
AlwI	GGATC	4 cut(s)	11, 245, 623, 894
Ama87I	CYCGRG	1 cut(s)	47
AoxI	GGCC	1 cut(s)	760
ApaLI	GTGCAC	2 cut(s)	411, 682
ApeKI	GCWGC	3 cut(s)	265, 365, 661
ApoI	RAATTY	3 cut(s)	26, 41, 528
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	508
AsuC2I	CCSGG	2 cut(s)	237, 863
AsuHPI	GGTGA	2 cut(s)	757, 859
AvaI	CYCGRG	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	508
BaeGI	GKGCMC	2 cut(s)	415, 686
BauI	CACGAG	1 cut(s)	155
Bbv12I	GWGCWC	2 cut(s)	415, 686
BbvI	GCAGC	3 cut(s)	252, 352, 648
BccI	CCATC	2 cut(s)	373, 583
BciT130I	CCWGG	3 cut(s)	179, 512, 786
BcnI	CCSGG	2 cut(s)	237, 863
BcoDI	GTCTC	2 cut(s)	44, 480
BfaI	CTAG	1 cut(s)	114
BisI	GCNGC	4 cut(s)	257, 266, 366, 662
BlsI	GCNGC	4 cut(s)	258, 267, 367, 663
Bme1390I	CCNGG	5 cut(s)	179, 237, 512, 786, 863
Bme18I	GGWCC	1 cut(s)	508
BmeT110I	CYCGRG	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	1 cut(s)	517
BmrFI	CCNGG	5 cut(s)	179, 237, 512, 786, 863
BmsI	GCATC	1 cut(s)	109
BoxI	GACNNNNGTC	1 cut(s)	437
BpuEI	CTTGAG	1 cut(s)	808
BpuMI	CCSGG	2 cut(s)	237, 863
BsaBI	GATNNNNATC	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	9 cut(s)	236, 254, 511, 673, 727, 741, 784, 785, 892
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	3 cut(s)	179, 512, 786
BseDI	CCNNGG	9 cut(s)	236, 254, 511, 673, 727, 741, 784, 785, 892
BseGI	GGATG	1 cut(s)	478
BseJI	GATNNNNATC	1 cut(s)	249
BseMII	CTCAG	2 cut(s)	12, 593
BseRI	GAGGAG	1 cut(s)	744
BseSI	GKGCMC	2 cut(s)	415, 686
BseXI	GCAGC	3 cut(s)	252, 352, 648
BsgI	GTGCAG	1 cut(s)	251
Bsh1236I	CGCG	2 cut(s)	92, 256
BshFI	GGCC	1 cut(s)	762
BsiHKAI	GWGCWC	2 cut(s)	415, 686
BsiHKCI	CYCGRG	1 cut(s)	47
BsiSI	CCGG	3 cut(s)	8, 236, 862
BslFI	GGGAC	1 cut(s)	620
BsmAI	GTCTC	2 cut(s)	44, 480
BsmBI	CGTCTC	2 cut(s)	44, 480
BsmFI	GGGAC	1 cut(s)	620
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	1 cut(s)	762
BsoBI	CYCGRG	1 cut(s)	47
Bsp1286I	GDGCHC	2 cut(s)	415, 686
Bsp1407I	TGTACA	1 cut(s)	566
Bsp143I	GATC	4 cut(s)	16, 250, 628, 886
Bsp19I	CCATGG	1 cut(s)	673
BspACI	CCGC	3 cut(s)	122, 254, 256
BspANI	GGCC	1 cut(s)	762
BspCNI	CTCAG	2 cut(s)	13, 592
BspFNI	CGCG	2 cut(s)	92, 256
BspLI	GGNNCC	1 cut(s)	517
BspPI	GGATC	4 cut(s)	11, 245, 623, 894
BsrGI	TGTACA	1 cut(s)	566
BssECI	CCNNGG	9 cut(s)	236, 254, 511, 673, 727, 741, 784, 785, 892
BssMI	GATC	4 cut(s)	16, 250, 628, 886
BssNI	GRCGYC	1 cut(s)	53
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	2 cut(s)	673, 741
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	3 cut(s)	179, 512, 786
Bst4CI	ACNGT	4 cut(s)	331, 417, 439, 896
BstACI	GRCGYC	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstAUI	TGTACA	1 cut(s)	566
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	21, 579
BstDSI	CCRYGG	3 cut(s)	254, 673, 892
BstF5I	GGATG	1 cut(s)	478
BstFNI	CGCG	2 cut(s)	92, 256
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	4 cut(s)	19, 253, 631, 889
BstMAI	GTCTC	2 cut(s)	44, 480
BstMBI	GATC	4 cut(s)	16, 250, 628, 886
BstMWI	GCNNNNNNNGC	9 cut(s)	89, 119, 262, 265, 274, 595, 647, 704, 759
BstNI	CCWGG	3 cut(s)	179, 512, 786
BstNSI	RCATGY	1 cut(s)	779
BstPAI	GACNNNNGTC	1 cut(s)	437
BstSCI	CCNGG	5 cut(s)	177, 235, 510, 784, 861
BstSLI	GKGCMC	2 cut(s)	415, 686
BstUI	CGCG	2 cut(s)	92, 256
BstV1I	GCAGC	3 cut(s)	252, 352, 648
BstX2I	RGATCY	2 cut(s)	628, 886
BstXI	CCANNNNNNTGG	1 cut(s)	161
BstYI	RGATCY	2 cut(s)	628, 886
BsuRI	GGCC	1 cut(s)	762
BtgI	CCRYGG	3 cut(s)	254, 673, 892
BtsCI	GGATG	1 cut(s)	478
BtsI	GCAGTG	1 cut(s)	873
BtsIMutI	CAGTG	3 cut(s)	413, 801, 873
Cac8I	GCNNGC	1 cut(s)	109
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	508
Cfr42I	CCGCGG	1 cut(s)	257
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	3 cut(s)	233, 280, 567
CviAII	CATG	5 cut(s)	230, 424, 634, 674, 776
CviQI	GTAC	3 cut(s)	233, 280, 567
DdeI	CTNAG	2 cut(s)	21, 579
DpnI	GATC	4 cut(s)	18, 252, 630, 888
DpnII	GATC	4 cut(s)	16, 250, 628, 886
Eco130I	CCWWGG	2 cut(s)	673, 741
Eco47I	GGWCC	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	242
Eco88I	CYCGRG	1 cut(s)	47
EcoRII	CCWGG	3 cut(s)	177, 510, 784
EcoT14I	CCWWGG	2 cut(s)	673, 741
EcoT22I	ATGCAT	2 cut(s)	425, 755
ErhI	CCWWGG	2 cut(s)	673, 741
Esp3I	CGTCTC	2 cut(s)	44, 480
FaeI	CATG	5 cut(s)	233, 427, 637, 677, 779
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	5 cut(s)	229, 423, 633, 673, 775
Fnu4HI	GCNGC	4 cut(s)	257, 266, 366, 662
FokI	GGATG	1 cut(s)	465
Fsp4HI	GCNGC	4 cut(s)	257, 266, 366, 662
FspBI	CTAG	1 cut(s)	114
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	4 cut(s)	257, 266, 366, 662
HaeIII	GGCC	1 cut(s)	762
HapII	CCGG	3 cut(s)	8, 236, 862
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	5 cut(s)	233, 427, 637, 677, 779
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HincII	GTYRAC	1 cut(s)	542
HindII	GTYRAC	1 cut(s)	542
HinfI	GANTC	7 cut(s)	128, 345, 404, 427, 654, 734, 765
HpaII	CCGG	3 cut(s)	8, 236, 862
HphI	GGTGA	2 cut(s)	757, 859
Hpy166II	GTNNAC	6 cut(s)	151, 413, 542, 569, 684, 781
Hpy188I	TCNGA	5 cut(s)	70, 133, 222, 432, 628
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	6 cut(s)	151, 413, 542, 569, 684, 781
HpyAV	CCTTC	1 cut(s)	812
HpyCH4III	ACNGT	4 cut(s)	331, 417, 439, 896
HpyCH4IV	ACGT	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	9 cut(s)	89, 119, 262, 265, 274, 595, 647, 704, 759
HpyF3I	CTNAG	2 cut(s)	21, 579
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	5 cut(s)	233, 427, 637, 677, 779
HspAI	GCGC	1 cut(s)	111
KspI	CCGCGG	1 cut(s)	257
Kzo9I	GATC	4 cut(s)	16, 250, 628, 886
LmnI	GCTCC	1 cut(s)	104
Lsp1109I	GCAGC	3 cut(s)	252, 352, 648
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	392, 799
MalI	GATC	4 cut(s)	18, 252, 630, 888
MboI	GATC	4 cut(s)	16, 250, 628, 886
MboII	GAAGA	2 cut(s)	572, 894
MflI	RGATCY	2 cut(s)	628, 886
MhlI	GDGCHC	2 cut(s)	415, 686
MluCI	AATT	5 cut(s)	26, 41, 528, 645, 708
MluI	ACGCGT	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	339
MmeI	TCCRAC	2 cut(s)	82, 222
MnlI	CCTC	4 cut(s)	443, 529, 627, 722
Mph1103I	ATGCAT	2 cut(s)	425, 755
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	3 cut(s)	159, 418, 806
MspA1I	CMGCKG	1 cut(s)	256
MspI	CCGG	3 cut(s)	8, 236, 862
MspR9I	CCNGG	5 cut(s)	179, 237, 512, 786, 863
Mva1269I	GAATGC	1 cut(s)	622
MvaI	CCWGG	3 cut(s)	179, 512, 786
MvnI	CGCG	2 cut(s)	92, 256
MwoI	GCNNNNNNNGC	9 cut(s)	89, 119, 262, 265, 274, 595, 647, 704, 759
NciI	CCSGG	2 cut(s)	237, 863
NcoI	CCATGG	1 cut(s)	673
NdeII	GATC	4 cut(s)	16, 250, 628, 886
NlaIII	CATG	5 cut(s)	233, 427, 637, 677, 779
NlaIV	GGNNCC	1 cut(s)	517
NmeAIII	GCCGAG	1 cut(s)	752
NmuCI	GTSAC	1 cut(s)	799
NsiI	ATGCAT	2 cut(s)	425, 755
NspI	RCATGY	1 cut(s)	779
PasI	CCCWGGG	1 cut(s)	785
PciI	ACATGT	1 cut(s)	775
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PctI	GAATGC	1 cut(s)	622
PfeI	GAWTC	6 cut(s)	128, 404, 427, 654, 734, 765
PkrI	GCNGC	4 cut(s)	258, 267, 367, 663
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
PscI	ACATGT	1 cut(s)	775
PshAI	GACNNNNGTC	1 cut(s)	437
Psp6I	CCWGG	3 cut(s)	177, 510, 784
PspGI	CCWGG	3 cut(s)	177, 510, 784
PspN4I	GGNNCC	1 cut(s)	517
PspPI	GGNCC	1 cut(s)	508
PsuI	RGATCY	2 cut(s)	628, 886
RsaI	GTAC	3 cut(s)	234, 281, 568
RsaNI	GTAC	3 cut(s)	233, 280, 567
RseI	CAYNNNNRTG	3 cut(s)	159, 418, 806
SacII	CCGCGG	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	4 cut(s)	257, 266, 366, 662
Sau3AI	GATC	4 cut(s)	16, 250, 628, 886
Sau96I	GGNCC	1 cut(s)	508
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	5 cut(s)	179, 237, 512, 786, 863
SduI	GDGCHC	2 cut(s)	415, 686
SfaNI	GCATC	1 cut(s)	109
Sfr303I	CCGCGG	1 cut(s)	257
SgrBI	CCGCGG	1 cut(s)	257
SinI	GGWCC	1 cut(s)	508
SmiMI	CAYNNNNRTG	3 cut(s)	159, 418, 806
SmlI	CTYRAG	1 cut(s)	823
SmoI	CTYRAG	1 cut(s)	823
Sse9I	AATT	5 cut(s)	26, 41, 528, 645, 708
SsiI	CCGC	3 cut(s)	122, 254, 256
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	5 cut(s)	177, 235, 510, 784, 861
StyI	CCWWGG	2 cut(s)	673, 741
TaaI	ACNGT	4 cut(s)	331, 417, 439, 896
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	15, 816
TasI	AATT	5 cut(s)	26, 41, 528, 645, 708
TatI	WGTACW	2 cut(s)	279, 566
TauI	GCSGC	1 cut(s)	259
TfiI	GAWTC	6 cut(s)	128, 404, 427, 654, 734, 765
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	3 cut(s)	420, 808, 873
TseFI	GTSAC	1 cut(s)	799
TseI	GCWGC	3 cut(s)	265, 365, 661
Tsp45I	GTSAC	1 cut(s)	799
TspDTI	ATGAA	6 cut(s)	150, 198, 218, 440, 477, 894
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	3 cut(s)	420, 808, 873
VneI	GTGCAC	2 cut(s)	411, 682
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	3 cut(s)	26, 41, 528
XceI	RCATGY	1 cut(s)	779
XspI	CTAG	1 cut(s)	114
Zsp2I	ATGCAT	2 cut(s)	425, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.