Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0015179

Physical Location & Seq

Genomic Coordinates Reverse (-)

61591702 .. 61594957

Gene Structure 3256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG439400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGTCATCGGACTTCGATCCTGATCGTTTCTCTCCTCCCAAATACCCTGAGACGCCGTACACATATTCCGAGAGAGATGTGGCTCTGTATGCTTTAGGTGTTGGAGCTTGCGCTAGGGATGCGGTAGATGCTGATGAACTTAAATACGTTTACCACGAGAATGGGCAGAAATCTATTCAGGTGTTGCCAACATTCACTGCTCTGTTTTCGCTCGGAAGTCTGAAGTTTGAAGTACCAGGGTTGGAATACGATCCGCGTCTTTTGCTGCATGGACAGCAATACATAGAAATATACAAGCCACTTCCTACAAGTGCTTCTCTAAACAATACGGTGAGTCTTGCCGGACTCCACGATAAAGGAAAAGCTGCTGTTGTTGAGATGGAAACCAAAAGTTATGATAAAGAATCTGGTGCATTGTTATGCATGAATCGGACAACTGTCTTTCTGCGAGGTGCTGGTGGCTTCTCAAAATCATCTCCTCCGTTTTCATATTCAAACTATCCAAAGGACAAGGGTTCATCTGTGAAAATTCCAAAAGGTCAACCTTTTGCAGTTTTTGAAGATTGTACACTACCATCTCAGGCATTACTGTATAGGCTATCTGGGGACTATAATCCTCTGCATTCAGATCCCATGATTGCAAAAATTGCAGGATTCACCCTGCCAATACTACACGGGTTGTGCACCCTTGGATTTGCAGTCAGGGCAATTATCAAATGTATATGCCGAGGAGATTCAAACAGGGTGAAATGCATATCGGGCCGATTCCTTCTACATGTTTACCCTGGTGAAACATTGGTCACTGAAATGTGGCTCGAAGGCTCTAGGGTAATATATCAAACAAAGGTGAAAGAACGAAGCCGGGCAGTGCTGTCTGGCTATGTCGATCTCCATGGTATATCTGCATCCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033542 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:0080023 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MaoC_dehydrat_N MaoC_dehydratas

Protein Analysis

304

Amino Acids

33.46

Weight (kDa)

8.06

Isoelectric Point (pI)

31.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFE-2_hydrat-2_N	PF22622	20 - 151	1.6e-39	MFE-2 hydratase 2 N-terminal domain
MaoC_dehydratas	PF01575	189 - 288	1e-24	MaoC like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76150
fragaria_vesca	FvH4_2g37800 FvH4_2g37800
malus_domestica	MD08G1005200.v1.1
prunus_persica	Prupe.1G357300_v2.0.a1 Prupe.1G357300_v2.0.a1
pyrus_communis	pycom08g00420
rosa_chinensis	RchiOBHm_Chr6g0303911
rosa_laevigata	RLG00000011035
rosa_roxburghii	Rroxscaffold_7G00164270
rosa_rugosa	Rorug06G0325900
rosa_samantha	Rh6AG440100 Rh6BG462900 Rh6CG452400 Rh6DG439400
rosa_wichuraiana	Rw6G038110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	256
AciI	CCGC	2 cut(s)	122, 254
AclWI	GGATC	3 cut(s)	11, 245, 623
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	1 cut(s)	242
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	3 cut(s)	59, 234, 568
AflIII	ACRYGT	1 cut(s)	775
AgsI	TTSAA	4 cut(s)	230, 495, 560, 738
AjnI	CCWGG	2 cut(s)	235, 784
AluBI	AGCT	2 cut(s)	107, 365
AluI	AGCT	2 cut(s)	107, 365
Alw21I	GWGCWC	1 cut(s)	686
Alw26I	GTCTC	1 cut(s)	44
Alw44I	GTGCAC	1 cut(s)	682
AlwI	GGATC	3 cut(s)	11, 245, 623
AoxI	GGCC	1 cut(s)	760
ApaLI	GTGCAC	1 cut(s)	682
ApeKI	GCWGC	2 cut(s)	265, 365
ApoI	RAATTY	1 cut(s)	528
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	760
AsuC2I	CCSGG	1 cut(s)	863
AsuHPI	GGTGA	5 cut(s)	343, 649, 757, 800, 859
BaeGI	GKGCMC	1 cut(s)	686
BauI	CACGAG	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	686
BbvI	GCAGC	2 cut(s)	252, 352
BccI	CCATC	2 cut(s)	373, 583
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	2 cut(s)	237, 786
BcnI	CCSGG	1 cut(s)	863
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	2 cut(s)	114, 825
BisI	GCNGC	2 cut(s)	266, 366
BlsI	GCNGC	2 cut(s)	267, 367
Bme1390I	CCNGG	3 cut(s)	237, 786, 863
BmgT120I	GGNCC	1 cut(s)	760
BmrFI	CCNGG	3 cut(s)	237, 786, 863
BmsI	GCATC	2 cut(s)	109, 118
BoxI	GACNNNNGTC	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	863
BsaBI	GATNNNNATC	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	5 cut(s)	236, 688, 727, 784, 892
Bse8I	GATNNNNATC	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	237, 786
BseDI	CCNNGG	5 cut(s)	236, 688, 727, 784, 892
BseGI	GGATG	2 cut(s)	124, 905
BseJI	GATNNNNATC	1 cut(s)	21
BseMII	CTCAG	2 cut(s)	39, 593
BseRI	GAGGAG	3 cut(s)	24, 468, 744
BseSI	GKGCMC	1 cut(s)	686
BseXI	GCAGC	2 cut(s)	252, 352
Bsh1236I	CGCG	1 cut(s)	256
BshFI	GGCC	1 cut(s)	762
BsiHKAI	GWGCWC	1 cut(s)	686
BsiSI	CCGG	2 cut(s)	342, 862
BslFI	GGGAC	1 cut(s)	620
BsmAI	GTCTC	1 cut(s)	44
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	620
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	1 cut(s)	762
Bsp1286I	GDGCHC	1 cut(s)	686
Bsp1407I	TGTACA	1 cut(s)	566
Bsp143I	GATC	5 cut(s)	16, 22, 250, 628, 886
Bsp19I	CCATGG	1 cut(s)	892
BspACI	CCGC	2 cut(s)	122, 254
BspANI	GGCC	1 cut(s)	762
BspCNI	CTCAG	2 cut(s)	40, 592
BspFNI	CGCG	1 cut(s)	256
BspPI	GGATC	3 cut(s)	11, 245, 623
BsrGI	TGTACA	1 cut(s)	566
BssECI	CCNNGG	5 cut(s)	236, 688, 727, 784, 892
BssMI	GATC	5 cut(s)	16, 22, 250, 628, 886
BssNI	GRCGYC	1 cut(s)	53
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	2 cut(s)	688, 892
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	2 cut(s)	237, 786
Bst4CI	ACNGT	3 cut(s)	331, 439, 591
BstACI	GRCGYC	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstAUI	TGTACA	1 cut(s)	566
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	48, 579
BstDSI	CCRYGG	1 cut(s)	892
BstF5I	GGATG	2 cut(s)	124, 905
BstFNI	CGCG	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	5 cut(s)	19, 25, 253, 631, 889
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	5 cut(s)	16, 22, 250, 628, 886
BstMWI	GCNNNNNNNGC	8 cut(s)	89, 119, 128, 262, 274, 647, 704, 759
BstNI	CCWGG	2 cut(s)	237, 786
BstNSI	RCATGY	1 cut(s)	779
BstPAI	GACNNNNGTC	1 cut(s)	437
BstSCI	CCNGG	3 cut(s)	235, 784, 861
BstSLI	GKGCMC	1 cut(s)	686
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	2 cut(s)	252, 352
BstX2I	RGATCY	1 cut(s)	628
BstXI	CCANNNNNNTGG	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	628
BsuRI	GGCC	1 cut(s)	762
BtgI	CCRYGG	1 cut(s)	892
BtsCI	GGATG	2 cut(s)	124, 905
BtsI	GCAGTG	2 cut(s)	195, 873
BtsIMutI	CAGTG	3 cut(s)	195, 801, 873
Cac8I	GCNNGC	1 cut(s)	109
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	760
CseI	GACGC	2 cut(s)	61, 245
Csp6I	GTAC	3 cut(s)	58, 233, 567
CviAII	CATG	5 cut(s)	269, 424, 634, 776, 893
CviQI	GTAC	3 cut(s)	58, 233, 567
DdeI	CTNAG	2 cut(s)	48, 579
DpnI	GATC	5 cut(s)	18, 24, 252, 630, 888
DpnII	GATC	5 cut(s)	16, 22, 250, 628, 886
Eco130I	CCWWGG	2 cut(s)	688, 892
Eco57I	CTGAAG	1 cut(s)	242
EcoRII	CCWGG	2 cut(s)	235, 784
EcoT14I	CCWWGG	2 cut(s)	688, 892
EcoT22I	ATGCAT	2 cut(s)	425, 755
ErhI	CCWWGG	2 cut(s)	688, 892
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	5 cut(s)	272, 427, 637, 779, 896
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	5 cut(s)	268, 423, 633, 775, 892
Fnu4HI	GCNGC	2 cut(s)	266, 366
FokI	GGATG	2 cut(s)	131, 892
Fsp4HI	GCNGC	2 cut(s)	266, 366
FspBI	CTAG	2 cut(s)	114, 825
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	2 cut(s)	266, 366
HaeIII	GGCC	1 cut(s)	762
HapII	CCGG	2 cut(s)	342, 862
HgaI	GACGC	2 cut(s)	61, 245
HhaI	GCGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	5 cut(s)	272, 427, 637, 779, 896
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HincII	GTYRAC	1 cut(s)	542
HindII	GTYRAC	1 cut(s)	542
HinfI	GANTC	7 cut(s)	334, 345, 404, 427, 654, 734, 765
HpaII	CCGG	2 cut(s)	342, 862
HphI	GGTGA	5 cut(s)	343, 649, 757, 800, 859
Hpy166II	GTNNAC	6 cut(s)	60, 151, 542, 569, 684, 781
Hpy188I	TCNGA	6 cut(s)	10, 70, 215, 222, 432, 628
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	6 cut(s)	60, 151, 542, 569, 684, 781
HpyAV	CCTTC	2 cut(s)	779, 812
HpyCH4III	ACNGT	3 cut(s)	331, 439, 591
HpyCH4IV	ACGT	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	8 cut(s)	89, 119, 128, 262, 274, 647, 704, 759
HpyF3I	CTNAG	2 cut(s)	48, 579
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	5 cut(s)	272, 427, 637, 779, 896
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	5 cut(s)	16, 22, 250, 628, 886
LmnI	GCTCC	1 cut(s)	104
Lsp1109I	GCAGC	2 cut(s)	252, 352
LweI	GCATC	2 cut(s)	109, 118
MaeI	CTAG	2 cut(s)	114, 825
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	799
MalI	GATC	5 cut(s)	18, 24, 252, 630, 888
MboI	GATC	5 cut(s)	16, 22, 250, 628, 886
MboII	GAAGA	1 cut(s)	572
MflI	RGATCY	1 cut(s)	628
MhlI	GDGCHC	1 cut(s)	686
MluCI	AATT	3 cut(s)	528, 645, 708
MlyI	GAGTC	2 cut(s)	339, 343
MmeI	TCCRAC	2 cut(s)	82, 222
MnlI	CCTC	5 cut(s)	45, 443, 489, 627, 722
Mph1103I	ATGCAT	2 cut(s)	425, 755
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	3 cut(s)	159, 418, 806
MspI	CCGG	2 cut(s)	342, 862
MspR9I	CCNGG	3 cut(s)	237, 786, 863
Mva1269I	GAATGC	1 cut(s)	622
MvaI	CCWGG	2 cut(s)	237, 786
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	8 cut(s)	89, 119, 128, 262, 274, 647, 704, 759
NciI	CCSGG	1 cut(s)	863
NcoI	CCATGG	1 cut(s)	892
NdeII	GATC	5 cut(s)	16, 22, 250, 628, 886
NlaIII	CATG	5 cut(s)	272, 427, 637, 779, 896
NmeAIII	GCCGAG	1 cut(s)	752
NmuCI	GTSAC	1 cut(s)	799
NsiI	ATGCAT	2 cut(s)	425, 755
NspI	RCATGY	1 cut(s)	779
PciI	ACATGT	1 cut(s)	775
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PctI	GAATGC	1 cut(s)	622
PfeI	GAWTC	5 cut(s)	404, 427, 654, 734, 765
PkrI	GCNGC	2 cut(s)	267, 367
PleI	GAGTC	2 cut(s)	339, 342
PpsI	GAGTC	2 cut(s)	339, 342
PscI	ACATGT	1 cut(s)	775
PshAI	GACNNNNGTC	1 cut(s)	437
Psp6I	CCWGG	2 cut(s)	235, 784
PspGI	CCWGG	2 cut(s)	235, 784
PspPI	GGNCC	1 cut(s)	760
PsuI	RGATCY	1 cut(s)	628
RsaI	GTAC	3 cut(s)	59, 234, 568
RsaNI	GTAC	3 cut(s)	58, 233, 567
RseI	CAYNNNNRTG	3 cut(s)	159, 418, 806
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	2 cut(s)	266, 366
Sau3AI	GATC	5 cut(s)	16, 22, 250, 628, 886
Sau96I	GGNCC	1 cut(s)	760
SchI	GAGTC	2 cut(s)	339, 343
ScrFI	CCNGG	3 cut(s)	237, 786, 863
SduI	GDGCHC	1 cut(s)	686
SetI	ASST	9 cut(s)	100, 109, 150, 183, 367, 454, 541, 547, 849
SfaNI	GCATC	2 cut(s)	109, 118
SmiMI	CAYNNNNRTG	3 cut(s)	159, 418, 806
Sse9I	AATT	3 cut(s)	528, 645, 708
SsiI	CCGC	2 cut(s)	122, 254
SspMI	CTAG	2 cut(s)	114, 825
StyD4I	CCNGG	3 cut(s)	235, 784, 861
StyI	CCWWGG	2 cut(s)	688, 892
TaaI	ACNGT	3 cut(s)	331, 439, 591
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	3 cut(s)	15, 816, 885
TasI	AATT	3 cut(s)	528, 645, 708
TatI	WGTACW	1 cut(s)	566
TfiI	GAWTC	5 cut(s)	404, 427, 654, 734, 765
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	3 cut(s)	202, 808, 873
TseFI	GTSAC	1 cut(s)	799
TseI	GCWGC	2 cut(s)	265, 365
Tsp45I	GTSAC	1 cut(s)	799
TspDTI	ATGAA	4 cut(s)	150, 440, 477, 507
TspGWI	ACGGA	2 cut(s)	471, 898
TspRI	CASTG	3 cut(s)	202, 808, 873
VneI	GTGCAC	1 cut(s)	682
XapI	RAATTY	1 cut(s)	528
XceI	RCATGY	1 cut(s)	779
XspI	CTAG	2 cut(s)	114, 825
Zsp2I	ATGCAT	2 cut(s)	425, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.