FvH4_2g38220

Synaptotagmin-like mitochondrial-lipid-binding domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
27675733 .. 27680641
4909 bp
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UTR
Exon/CDS
Intron
FvH4_2g38220.t1

Sequence Viewer

Length: 1620 bp
ATGGGTATTCTGAGTTCTATTCTGGGTTTCTGTGGCTTTGGGATTGGTACTTCTATTGGGATCGTGATCGGTTACTACATGTTCATCTACTTCCAGCCTACTCATGTCAAGGATCCTGTGATTCGTCCTTTGGTTGAGCAAGATAGCAAATCGCTGCAACGGATGCTTGCGGATATCCCCTTGTGGGTTAAAAACCCTGACTATGATCGTCTTGACTGGCTTAACAAGTTTGTTGAGACTATGTGGCCTTATCTGGACAAGGCAATTTGCAAAACTGCAAAGACCATAGCTAAGCCCATTATTGCCGAGCAAATCCCGAAGTATAAAATTGACTCTGTTGATTTTGAAGTACTTACACTGGGCACCCTGCCACCAACTTTTCAAGGAATGAAAGTTTATGTCACTGGTGAGAAGGAATTGATTATGGAACTAGCCTTGAAGTGGGCAGGAAATCCTAACATCACTGTTGCAGCTAAAGCATTTGGGTTGAAAGCCACAGTTCAGGTGCTTGACTTGCAAGTCTTTGCGTCCCCACGTATCACCCTGAAGCCTTTGGTTCCGTCATTTCCTTGTTTTTCGAAAATCTTTGTTTCTCTTATGGAGAAGCCACATGTTGACTTTGGACTAAAACTCCTTGGAGCAGATGCAATGGCTATTCCAGGCCTGTATGGGTTTGTGCAGGAGCTTATTAAGGAGCAAGTGGCAAATATGTACCTATGGCCCAAATACCTAGAAGTAACTATCATGGATCCCAACCTTGCCATGAGGAAACCTGTTGGGGTTCTCACTGTAAAGGTTCTGAAGGCGACAAAACTTAAAAAGAAAGATCTATTGGGAGGTGCAGATCCTTATGTAAAACTCAAGCTGACTGAGGACAAGCTTCCTTCGAAGAAAACAACAGTGAAACACAAAACTTTGAGCCCTGAATGGAATGAGGAATTTCATATGGCTATTAGAGACCCCGGAACTCAAGCATTGGAAATTATGGTTTATGATTGGGAAAAGGTTGGCCGACACGATAAGATGGGTATGAATGTCGTTCCCTTGAGTGAGCTTACTCCTGATGAGTCTAAAGTTATGACTCTTGACATACTGAAAAACATGGACCCAAATGATGCTCAAAATGAGAAGTTGCGTGGACAGCTTGTTGTTGAACTGCTCTACAAACCCTTCAAGGAGGATGAGATGCCTGAAGATAAGGAAGATTCAAAAGAGGTACAAAAGGCTCCTGAAGGAACACCTGAAGGTGGTGGTATGCTTGTAGTTATCGTCCATGAAGCTGAAGATTTGGAAGGAAAGCACCACACTAATCCACATGTGCGATTACTATTCAAAGGGGAGGAGAGAAGAACCAAGCAAGTCAGGAAAAACCGGGATCCAAGATTTAATGAGGAGTTTAACTTTATGCTAGAAGAACCTCCTAAAGCTCATGATAGGCTTCATGTTGAGGTAGTGAGCACTTCCTCGAGGATGGGCCTGCTGCATCCTAAGGAAAATCTTGGATATTGTGATATAAATCTAGCGGATGTTGTTAGCAACAAAAGAATCAATGAGAAGCACAATCTGATCGACTCGAAGAATGGAAAGATTCAAATTGAGCTGCAGTGGCGAACAGCTTGA

Protein Analysis

540

Amino Acids

61.23

Weight (kDa)

7.22

Isoelectric Point (pI)

28.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMP_LBD PF17047 67 - 247 6.3e-17 Synaptotagmin-like mitochondrial-lipid-binding domain
C2 PF00168 260 - 358 3.2e-25 C2 domain
C2 PF00168 419 - 521 1.9e-12 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 518
AbsI CCTCGAGG 1 cut(s) 1465
AccB1I GGYRCC 1 cut(s) 362
AciI CCGC 2 cut(s) 170, 1523
AclWI GGATC 8 cut(s) 68, 107, 120, 743, 756, 839, 1370, 1383
AcoI YGGCCR 1 cut(s) 1009
AcsI RAATTY 1 cut(s) 938
AcuI CTGAAG 6 cut(s) 566, 821, 1212, 1251, 1263, 1302
AfaI GTAC 4 cut(s) 49, 351, 713, 1218
AfiI CCNNNNNNNGG 3 cut(s) 184, 441, 1247
AflIII ACRYGT 3 cut(s) 78, 610, 1315
AgsI TTSAA 9 cut(s) 347, 383, 439, 490, 1154, 1174, 1209, 1333, 1592
AjnI CCWGG 1 cut(s) 658
AjuI GAANNNNNNNTTGG 2 cut(s) 815, 847
Alw21I GWGCWC 1 cut(s) 1460
Alw26I GTCTC 2 cut(s) 230, 951
AlwI GGATC 8 cut(s) 68, 107, 120, 743, 756, 839, 1370, 1383
Ama87I CYCGRG 1 cut(s) 1465
AoxI GGCC 5 cut(s) 245, 661, 719, 1009, 1474
ApeKI GCWGC 4 cut(s) 154, 470, 1480, 1600
ApoI RAATTY 1 cut(s) 938
AspS9I GGNCC 3 cut(s) 720, 1105, 1474
AsuC2I CCSGG 2 cut(s) 963, 1373
AsuHPI GGTGA 2 cut(s) 419, 532
AsuII TTCGAA 2 cut(s) 578, 887
AvaI CYCGRG 1 cut(s) 1465
AvaII GGWCC 1 cut(s) 1105
AxyI CCTNAGG 1 cut(s) 1488
BaeGI GKGCMC 1 cut(s) 365
BamHI GGATCC 3 cut(s) 112, 748, 1375
BanI GGYRCC 1 cut(s) 362
BanII GRGCYC 1 cut(s) 923
Bbv12I GWGCWC 1 cut(s) 1460
BbvI GCAGC 4 cut(s) 141, 482, 1467, 1587
BccI CCATC 2 cut(s) 1018, 1465
BciT130I CCWGG 1 cut(s) 660
BcnI CCSGG 2 cut(s) 963, 1373
BcoDI GTCTC 2 cut(s) 230, 951
BfaI CTAG 4 cut(s) 431, 731, 1409, 1520
BfmI CTRYAG 1 cut(s) 1601
BglII AGATCT 1 cut(s) 826
BisI GCNGC 4 cut(s) 155, 471, 1481, 1601
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 4 cut(s) 156, 472, 1482, 1602
BmcAI AGTACT 1 cut(s) 351
Bme1390I CCNGG 3 cut(s) 660, 963, 1373
Bme18I GGWCC 1 cut(s) 1105
BmeT110I CYCGRG 1 cut(s) 1465
BmgT120I GGNCC 3 cut(s) 720, 1105, 1474
BmiI GGNNCC 7 cut(s) 114, 364, 558, 750, 1107, 1227, 1377
BmrFI CCNGG 3 cut(s) 660, 963, 1373
BmrI ACTGGG 1 cut(s) 368
BmsI GCATC 5 cut(s) 153, 634, 1105, 1176, 1492
BmuI ACTGGG 1 cut(s) 368
Bpu1102I GCTNAGC 1 cut(s) 291
Bpu14I TTCGAA 2 cut(s) 578, 887
BpuEI CTTGAG 3 cut(s) 845, 954, 1066
BpuMI CCSGG 2 cut(s) 963, 1373
BsaAI YACGTR 1 cut(s) 536
BsaBI GATNNNNATC 2 cut(s) 65, 1515
BsaI GGTCTC 1 cut(s) 951
BsaJI CCNNGG 2 cut(s) 634, 961
BsaXI ACNNNNNCTCC 2 cut(s) 615, 645
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 441, 1247
Bse1I ACTGG 3 cut(s) 221, 363, 409
Bse21I CCTNAGG 1 cut(s) 1488
Bse3DI GCAATG 1 cut(s) 654
Bse8I GATNNNNATC 2 cut(s) 65, 1515
BseBI CCWGG 1 cut(s) 660
BseDI CCNNGG 2 cut(s) 634, 961
BseGI GGATG 5 cut(s) 168, 1186, 1476, 1483, 1531
BseJI GATNNNNATC 2 cut(s) 65, 1515
BseLI CCNNNNNNNGG 3 cut(s) 184, 441, 1247
BseMI GCAATG 1 cut(s) 654
BseMII CTCAG 1 cut(s) 861
BseNI ACTGG 3 cut(s) 221, 363, 409
BseRI GAGGAG 2 cut(s) 1355, 1406
BseSI GKGCMC 1 cut(s) 365
BseXI GCAGC 4 cut(s) 141, 482, 1467, 1587
BsgI GTGCAG 2 cut(s) 698, 861
BshFI GGCC 5 cut(s) 247, 663, 721, 1011, 1476
BshNI GGYRCC 1 cut(s) 362
BsiHKAI GWGCWC 1 cut(s) 1460
BsiHKCI CYCGRG 1 cut(s) 1465
BsiSI CCGG 2 cut(s) 963, 1372
BslFI GGGAC 1 cut(s) 514
BslI CCNNNNNNNGG 3 cut(s) 184, 441, 1247
BsmAI GTCTC 2 cut(s) 230, 951
BsmFI GGGAC 1 cut(s) 514
BsnI GGCC 5 cut(s) 247, 663, 721, 1011, 1476
Bso31I GGTCTC 1 cut(s) 951
BsoBI CYCGRG 1 cut(s) 1465
Bsp119I TTCGAA 2 cut(s) 578, 887
Bsp1286I GDGCHC 3 cut(s) 365, 923, 1460
Bsp143I GATC 9 cut(s) 60, 66, 112, 205, 748, 826, 844, 1375, 1566
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 2 cut(s) 170, 1523
BspANI GGCC 5 cut(s) 247, 663, 721, 1011, 1476
BspCNI CTCAG 1 cut(s) 862
BspHI TCATGA 1 cut(s) 1429
BspLI GGNNCC 7 cut(s) 114, 364, 558, 750, 1107, 1227, 1377
BspMAI CTGCAG 1 cut(s) 1605
BspPI GGATC 8 cut(s) 68, 107, 120, 743, 756, 839, 1370, 1383
BspT104I TTCGAA 2 cut(s) 578, 887
BspT107I GGYRCC 1 cut(s) 362
BspTNI GGTCTC 1 cut(s) 951
BsrDI GCAATG 1 cut(s) 654
BsrI ACTGG 3 cut(s) 221, 363, 409
BssECI CCNNGG 2 cut(s) 634, 961
BssMI GATC 9 cut(s) 60, 66, 112, 205, 748, 826, 844, 1375, 1566
BssT1I CCWWGG 1 cut(s) 634
Bst2UI CCWGG 1 cut(s) 660
Bst4CI ACNGT 4 cut(s) 466, 499, 790, 901
BstAPI GCANNNNNTGC 1 cut(s) 163
BstBAI YACGTR 1 cut(s) 536
BstBI TTCGAA 2 cut(s) 578, 887
BstC8I GCNNGC 2 cut(s) 168, 1478
BstDEI CTNAG 4 cut(s) 11, 291, 870, 1488
BstF5I GGATG 5 cut(s) 168, 1186, 1476, 1483, 1531
BstKTI GATC 9 cut(s) 63, 69, 115, 208, 751, 829, 847, 1378, 1569
BstMAI GTCTC 2 cut(s) 230, 951
BstMBI GATC 9 cut(s) 60, 66, 112, 205, 748, 826, 844, 1375, 1566
BstMWI GCNNNNNNNGC 5 cut(s) 163, 476, 514, 1141, 1606
BstNI CCWGG 1 cut(s) 660
BstNSI RCATGY 3 cut(s) 82, 614, 1319
BstSCI CCNGG 3 cut(s) 658, 961, 1371
BstSFI CTRYAG 1 cut(s) 1601
BstSLI GKGCMC 1 cut(s) 365
BstV1I GCAGC 4 cut(s) 141, 482, 1467, 1587
BstX2I RGATCY 5 cut(s) 112, 748, 826, 844, 1375
BstYI RGATCY 5 cut(s) 112, 748, 826, 844, 1375
Bsu36I CCTNAGG 1 cut(s) 1488
BsuRI GGCC 5 cut(s) 247, 663, 721, 1011, 1476
BtsCI GGATG 5 cut(s) 168, 1186, 1476, 1483, 1531
BtsI GCAGTG 1 cut(s) 1610
BtsIMutI CAGTG 6 cut(s) 356, 402, 462, 786, 906, 1610
Cac8I GCNNGC 2 cut(s) 168, 1478
CciI TCATGA 1 cut(s) 1429
Cfr13I GGNCC 3 cut(s) 720, 1105, 1474
CseI GACGC 1 cut(s) 516
Csp6I GTAC 4 cut(s) 48, 350, 712, 1217
CviQI GTAC 4 cut(s) 48, 350, 712, 1217
DdeI CTNAG 4 cut(s) 11, 291, 870, 1488
DpnI GATC 9 cut(s) 62, 68, 114, 207, 750, 828, 846, 1377, 1568
DpnII GATC 9 cut(s) 60, 66, 112, 205, 748, 826, 844, 1375, 1566
DrdI GACNNNNNNGTC 1 cut(s) 518
DseDI GACNNNNNNGTC 1 cut(s) 518
EaeI YGGCCR 1 cut(s) 1009
Eco130I CCWWGG 1 cut(s) 634
Eco147I AGGCCT 1 cut(s) 663
Eco24I GRGCYC 1 cut(s) 923
Eco31I GGTCTC 1 cut(s) 951
Eco32I GATATC 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 1105
Eco57I CTGAAG 6 cut(s) 566, 821, 1212, 1251, 1263, 1302
Eco81I CCTNAGG 1 cut(s) 1488
Eco88I CYCGRG 1 cut(s) 1465
EcoRII CCWGG 1 cut(s) 658
EcoRV GATATC 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 634
EcoT38I GRGCYC 1 cut(s) 923
ErhI CCWWGG 1 cut(s) 634
FaqI GGGAC 1 cut(s) 514
FauNDI CATATG 1 cut(s) 945
Fnu4HI GCNGC 4 cut(s) 155, 471, 1481, 1601
FokI GGATG 5 cut(s) 175, 1193, 1470, 1483, 1538
FriOI GRGCYC 1 cut(s) 923
Fsp4HI GCNGC 4 cut(s) 155, 471, 1481, 1601
FspBI CTAG 4 cut(s) 431, 731, 1409, 1520
GluI GCNGC 4 cut(s) 155, 471, 1481, 1601
HaeIII GGCC 5 cut(s) 247, 663, 721, 1011, 1476
HapII CCGG 2 cut(s) 963, 1372
HgaI GACGC 1 cut(s) 516
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 1 cut(s) 878
HinfI GANTC 8 cut(s) 121, 332, 1067, 1081, 1205, 1545, 1571, 1588
HpaII CCGG 2 cut(s) 963, 1372
HphI GGTGA 2 cut(s) 419, 532
Hpy166II GTNNAC 2 cut(s) 616, 1139
Hpy188I TCNGA 3 cut(s) 12, 801, 1566
Hpy188III TCNNGA 9 cut(s) 64, 212, 254, 316, 1061, 1085, 1229, 1363, 1430
Hpy8I GTNNAC 2 cut(s) 616, 1139
HpyAV CCTTC 7 cut(s) 406, 796, 894, 1180, 1226, 1238, 1286
HpyCH4III ACNGT 4 cut(s) 466, 499, 790, 901
HpyCH4IV ACGT 1 cut(s) 535
HpyF10VI GCNNNNNNNGC 5 cut(s) 163, 476, 514, 1141, 1606
HpyF3I CTNAG 4 cut(s) 11, 291, 870, 1488
HpySE526I ACGT 1 cut(s) 535
Kzo9I GATC 9 cut(s) 60, 66, 112, 205, 748, 826, 844, 1375, 1566
LmnI GCTCC 4 cut(s) 638, 682, 694, 1231
Lsp1109I GCAGC 4 cut(s) 141, 482, 1467, 1587
LweI GCATC 5 cut(s) 153, 634, 1105, 1176, 1492
MaeI CTAG 4 cut(s) 431, 731, 1409, 1520
MaeII ACGT 1 cut(s) 535
MaeIII GTNAC 3 cut(s) 71, 400, 736
MalI GATC 9 cut(s) 62, 68, 114, 207, 750, 828, 846, 1377, 1568
MboI GATC 9 cut(s) 60, 66, 112, 205, 748, 826, 844, 1375, 1566
MboII GAAGA 7 cut(s) 901, 1205, 1214, 1295, 1359, 1424, 1588
MflI RGATCY 5 cut(s) 112, 748, 826, 844, 1375
MhlI GDGCHC 3 cut(s) 365, 923, 1460
MluCI AATT 6 cut(s) 264, 327, 416, 938, 981, 1593
MlyI GAGTC 4 cut(s) 326, 1075, 1076, 1565
MseI TTAA 6 cut(s) 189, 222, 690, 816, 1386, 1398
MspI CCGG 2 cut(s) 963, 1372
MspR9I CCNGG 3 cut(s) 660, 963, 1373
MvaI CCWGG 1 cut(s) 660
MwoI GCNNNNNNNGC 5 cut(s) 163, 476, 514, 1141, 1606
NciI CCSGG 2 cut(s) 963, 1373
NdeI CATATG 1 cut(s) 945
NdeII GATC 9 cut(s) 60, 66, 112, 205, 748, 826, 844, 1375, 1566
NlaIV GGNNCC 7 cut(s) 114, 364, 558, 750, 1107, 1227, 1377
NmeAIII GCCGAG 1 cut(s) 331
NmuCI GTSAC 1 cut(s) 400
NspI RCATGY 3 cut(s) 82, 614, 1319
NspV TTCGAA 2 cut(s) 578, 887
PaeR7I CTCGAG 1 cut(s) 1465
PagI TCATGA 1 cut(s) 1429
PceI AGGCCT 1 cut(s) 663
PciI ACATGT 3 cut(s) 78, 610, 1315
PfeI GAWTC 4 cut(s) 121, 1205, 1545, 1588
PkrI GCNGC 4 cut(s) 156, 472, 1482, 1602
PleI GAGTC 4 cut(s) 326, 1075, 1075, 1565
PpsI GAGTC 4 cut(s) 326, 1075, 1075, 1565
Ppu21I YACGTR 1 cut(s) 536
PscI ACATGT 3 cut(s) 78, 610, 1315
Psp6I CCWGG 1 cut(s) 658
PspGI CCWGG 1 cut(s) 658
PspN4I GGNNCC 7 cut(s) 114, 364, 558, 750, 1107, 1227, 1377
PspPI GGNCC 3 cut(s) 720, 1105, 1474
PspXI VCTCGAGB 1 cut(s) 1465
PsrI GAACNNNNNNTAC 1 cut(s) 30
PstI CTGCAG 1 cut(s) 1605
PsuI RGATCY 5 cut(s) 112, 748, 826, 844, 1375
RsaI GTAC 4 cut(s) 49, 351, 713, 1218
RsaNI GTAC 4 cut(s) 48, 350, 712, 1217
SaqAI TTAA 6 cut(s) 189, 222, 690, 816, 1386, 1398
SatI GCNGC 4 cut(s) 155, 471, 1481, 1601
Sau3AI GATC 9 cut(s) 60, 66, 112, 205, 748, 826, 844, 1375, 1566
Sau96I GGNCC 3 cut(s) 720, 1105, 1474
ScaI AGTACT 1 cut(s) 351
SchI GAGTC 4 cut(s) 326, 1075, 1076, 1565
ScrFI CCNGG 3 cut(s) 660, 963, 1373
SduI GDGCHC 3 cut(s) 365, 923, 1460
SfaNI GCATC 5 cut(s) 153, 634, 1105, 1176, 1492
SfcI CTRYAG 1 cut(s) 1601
Sfr274I CTCGAG 1 cut(s) 1465
SfuI TTCGAA 2 cut(s) 578, 887
SinI GGWCC 1 cut(s) 1105
SlaI CTCGAG 1 cut(s) 1465
SmlI CTYRAG 4 cut(s) 860, 969, 1045, 1465
SmoI CTYRAG 4 cut(s) 860, 969, 1045, 1465
Sse9I AATT 6 cut(s) 264, 327, 416, 938, 981, 1593
SseBI AGGCCT 1 cut(s) 663
SsiI CCGC 2 cut(s) 170, 1523
SspMI CTAG 4 cut(s) 431, 731, 1409, 1520
StuI AGGCCT 1 cut(s) 663
StyD4I CCNGG 3 cut(s) 658, 961, 1371
StyI CCWWGG 1 cut(s) 634
TaaI ACNGT 4 cut(s) 466, 499, 790, 901
TaiI ACGT 1 cut(s) 538
TaqI TCGA 5 cut(s) 578, 887, 1466, 1569, 1574
TasI AATT 6 cut(s) 264, 327, 416, 938, 981, 1593
TatI WGTACW 1 cut(s) 349
TfiI GAWTC 4 cut(s) 121, 1205, 1545, 1588
Tru1I TTAA 6 cut(s) 189, 222, 690, 816, 1386, 1398
Tru9I TTAA 6 cut(s) 189, 222, 690, 816, 1386, 1398
TscAI CASTG 6 cut(s) 363, 409, 469, 793, 906, 1610
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 4 cut(s) 154, 470, 1480, 1600
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 6 cut(s) 73, 404, 932, 1046, 1290, 1430
TspGWI ACGGA 2 cut(s) 175, 549
TspRI CASTG 6 cut(s) 363, 409, 469, 793, 906, 1610
VpaK11BI GGWCC 1 cut(s) 1105
XapI RAATTY 1 cut(s) 938
XceI RCATGY 3 cut(s) 82, 614, 1319
XhoI CTCGAG 1 cut(s) 1465
XspI CTAG 4 cut(s) 431, 731, 1409, 1520
ZrmI AGTACT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.