Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008282

Physical Location & Seq

Genomic Coordinates Forward (+)

33397877 .. 33402514

Gene Structure 4638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G363200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1617 bp

ATGGGCATTCTGAGTTCGATTTTGGGTTTTTGCGGTTTTGGATTTGGAACTTCGATTGGGCTTGTGATCGGGTATTACCTTTTCATCTACTTCCAGCCAACTGACGTCAAGGATCCTGGTATTCGTCCTTTGGTTGAGCAAGATTCAAATACTTTGCAACGGCTGCTTCCGGAGATACCCATGTGGGTTAAAAATCCAGACTATGATCGTGTTGACTGGCTTAATAAATTTATTGAGCTTATGTGGCCTTACCTGGACAAGGCAATTTGCAAAACTGCAAGGACCATAGCAAAGCCCATTATTGCTGAGCAAATTCCAAAATACAAAATTGATTCCGTTGAGTTTGAAGCACTTTCCCTGGGCTCCTTACCACCAACTTTTCAAGGAATAAAAGTCTATGTCACTGGTGAGAAGGAATTGATAATGGAACTATCAATGAAGTGGGCAGGCAATCCAAACATCCTTGTTGCAGTTAAAGCATTTGGGTTGAGAGCCACAGTTCAGGTGGTTGATTTGCAAGTGTTTGCTTCTCCACGTATCACCATGAAGCCTTTGGTTCCAGCATTTCCTTGTTTTTCAAAAATTTTTGTGTCTCTAATGGAGAAGCCACATGTTGACTTTGGATTAAAACTACTTGGCGCAGATGCTATGGCTATTCCTGGCCTATATGGGTTTGTCCAGGAGCTTATTAAAGATCAAGTGGCAAACATGTACCTATGGCCCAAAGCCCTAGAAGTACCAATCATGGATCCTACAATGGCTATGAGGAAACCTGTTGGGGTTCTCCATGTAAAAGTTATAAAGGCAATAAAGCTTAGAAAGAAAGATTTATTAGGAGCAGCAGATCCTTATGTGAAACTCAAGCTCACTGAGGACAAGCTTCCTTCAAAGAAAACAGCTGTGAAACACAACAATTTGAACCCAGAATGGAATCAAGAGTTTAATTGGGTTGTCAGAGACCCAGGGACTCAAGCATTAGAGGCTGTAGTTTATGATTGGGAAAAGATTGGCAAACATGACAAAATGGGTATGAATGTCATTCCACTAAAGGATCTTACACCCGATGAGCCTAAAGTTGTGACTGTTGACATACTGAAAAACATGGACCCTAATGATGCTCAAAATGAGAAGTTACGTGGACAGCTTGTTGTGGAACTGATCTATAAACCTTTTAAGGAGGATGAGATGCCTAAAGATGATGAAGATCCAAATGCCATACAAAAGGCTCCTGAAGGAACACCTGCAGGTGGTGGGGTGCTTGTAGTTTTAGTCCATGAAGCTGAAGATGTGGAAGGAAAGCACCACACTAACCCACAAGTGCGAATACTCTTCAGAGGAGAGGAGAGAAGAACCAAGATGGTGAAGAAAAATCGTGATCCAAGATGGGATGAGGAGTTTCAGTTTATGTTAGAGGAACCACCTAAAAGCGATATGCTTCATGTTGAAGTAATTAGCATCTCCTCGAGGATGGGCCTGTTGCATCCCAAGGAAACTCTTGGATATGTGGATATAAACTTGGCGGATGTTGTTAGCAATAGAAGAATCAATGAAAAATACCATCTGATTGACTCAAAGAATGGACGGCTTCAAATTGAGCTGCAGTGGAGAACATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044232 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

539

Amino Acids

61.1

Weight (kDa)

6.59

Isoelectric Point (pI)

28.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20080 AT1G20080 AT1G20080 AT1G20080 AT1G20080
fragaria_vesca	FvH4_2g38220
malus_domestica	MD08G1010600.v1.1 MD15G1010700.v1.1
prunus_persica	Prupe.1G363200_v2.0.a1 Prupe.1G363200_v2.0.a1
pyrus_communis	pycom08g00920 pycom15g00900 pycom15g00910
rosa_chinensis	RchiOBHm_Chr6g0303161
rosa_laevigata	RLG00000011101
rosa_multiflora	Rmu_sc0007936.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164960
rosa_rugosa	Rorug06G0319500 Rorug06G0319600
rosa_samantha	Rh6AG433500 Rh6BG469200 Rh6DG432600
rosa_wichuraiana	Rw6G037590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	800
AarI	CACCTGC	2 cut(s)	1235, 1249
AatII	GACGTC	1 cut(s)	108
AbsI	CCTCGAGG	1 cut(s)	1462
Acc36I	ACCTGC	2 cut(s)	1235, 1249
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	2 cut(s)	33, 1520
AclWI	GGATC	8 cut(s)	107, 120, 743, 756, 839, 1059, 1199, 1370
AcsI	RAATTY	3 cut(s)	227, 312, 582
AcuI	CTGAAG	3 cut(s)	1251, 1302, 1315
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	2 cut(s)	713, 738
AfiI	CCNNNNNNNGG	2 cut(s)	259, 1247
AflIII	ACRYGT	2 cut(s)	610, 708
AgsI	TTSAA	8 cut(s)	147, 347, 383, 579, 888, 919, 1445, 1589
AjnI	CCWGG	6 cut(s)	115, 252, 357, 658, 678, 961
AluBI	AGCT	9 cut(s)	238, 685, 814, 865, 880, 899, 1144, 1280, 1597
AluI	AGCT	9 cut(s)	238, 685, 814, 865, 880, 899, 1144, 1280, 1597
Alw26I	GTCTC	2 cut(s)	597, 951
AlwI	GGATC	8 cut(s)	107, 120, 743, 756, 839, 1059, 1199, 1370
Ama87I	CYCGRG	1 cut(s)	1462
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	4 cut(s)	245, 661, 719, 1471
ApeKI	GCWGC	3 cut(s)	163, 839, 1597
ApoI	RAATTY	3 cut(s)	227, 312, 582
AspLEI	GCGC	1 cut(s)	641
AspS9I	GGNCC	4 cut(s)	282, 720, 1105, 1471
AsuHPI	GGTGA	3 cut(s)	419, 532, 1372
AvaI	CYCGRG	1 cut(s)	1462
AvaII	GGWCC	2 cut(s)	282, 1105
BaeI	ACNNNNGTAYC	2 cut(s)	167, 200
BamHI	GGATCC	2 cut(s)	112, 748
BanII	GRGCYC	1 cut(s)	365
BbvI	GCAGC	3 cut(s)	150, 851, 1584
BccI	CCATC	4 cut(s)	1351, 1377, 1462, 1566
BceAI	ACGGC	2 cut(s)	176, 1598
BciT130I	CCWGG	6 cut(s)	117, 254, 359, 660, 680, 963
BcoDI	GTCTC	2 cut(s)	597, 951
BfaI	CTAG	1 cut(s)	731
BfmI	CTRYAG	3 cut(s)	984, 1242, 1598
BfuAI	ACCTGC	2 cut(s)	1235, 1249
BisI	GCNGC	3 cut(s)	164, 840, 1598
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	3 cut(s)	165, 841, 1599
Bme1390I	CCNGG	6 cut(s)	117, 254, 359, 660, 680, 963
Bme18I	GGWCC	2 cut(s)	282, 1105
BmeT110I	CYCGRG	1 cut(s)	1462
BmgT120I	GGNCC	4 cut(s)	282, 720, 1105, 1471
BmiI	GGNNCC	7 cut(s)	114, 364, 558, 750, 1107, 1227, 1416
BmrFI	CCNGG	6 cut(s)	117, 254, 359, 660, 680, 963
BmsI	GCATC	5 cut(s)	634, 1105, 1176, 1464, 1489
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	2 cut(s)	845, 954
BsaAI	YACGTR	2 cut(s)	536, 1136
BsaBI	GATNNNNATC	1 cut(s)	1203
BsaHI	GRCGYC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	951
BsaJI	CCNNGG	5 cut(s)	357, 358, 961, 962, 1485
BsaWI	WCCGGW	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	1385, 1415
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 1247
Bse1I	ACTGG	2 cut(s)	221, 409
Bse8I	GATNNNNATC	1 cut(s)	1203
BseAI	TCCGGA	1 cut(s)	169
BseBI	CCWGG	6 cut(s)	117, 254, 359, 660, 680, 963
BseDI	CCNNGG	5 cut(s)	357, 358, 961, 962, 1485
BseGI	GGATG	6 cut(s)	459, 1186, 1393, 1473, 1480, 1528
BseJI	GATNNNNATC	1 cut(s)	1203
BseLI	CCNNNNNNNGG	2 cut(s)	259, 1247
BseMII	CTCAG	2 cut(s)	297, 861
BseNI	ACTGG	2 cut(s)	221, 409
BseRI	GAGGAG	4 cut(s)	1350, 1355, 1406, 1450
BseXI	GCAGC	3 cut(s)	150, 851, 1584
BshFI	GGCC	4 cut(s)	247, 663, 721, 1473
BsiHKCI	CYCGRG	1 cut(s)	1462
BsiSI	CCGG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	979
BslI	CCNNNNNNNGG	2 cut(s)	259, 1247
BsmAI	GTCTC	2 cut(s)	597, 951
BsmFI	GGGAC	1 cut(s)	979
BsmI	GAATGC	1 cut(s)	6
BsnI	GGCC	4 cut(s)	247, 663, 721, 1473
Bso31I	GGTCTC	1 cut(s)	951
BsoBI	CYCGRG	1 cut(s)	1462
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp13I	TCCGGA	1 cut(s)	169
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	2 cut(s)	33, 1520
BspANI	GGCC	4 cut(s)	247, 663, 721, 1473
BspCNI	CTCAG	2 cut(s)	298, 862
BspEI	TCCGGA	1 cut(s)	169
BspLI	GGNNCC	7 cut(s)	114, 364, 558, 750, 1107, 1227, 1416
BspMAI	CTGCAG	2 cut(s)	1246, 1602
BspMI	ACCTGC	2 cut(s)	1235, 1249
BspPI	GGATC	8 cut(s)	107, 120, 743, 756, 839, 1059, 1199, 1370
BspTNI	GGTCTC	1 cut(s)	951
BsrI	ACTGG	2 cut(s)	221, 409
BssECI	CCNNGG	5 cut(s)	357, 358, 961, 962, 1485
BssNI	GRCGYC	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	1485
Bst2UI	CCWGG	6 cut(s)	117, 254, 359, 660, 680, 963
Bst4CI	ACNGT	2 cut(s)	499, 1084
Bst6I	CTCTTC	1 cut(s)	1334
BstACI	GRCGYC	1 cut(s)	105
BstAPI	GCANNNNNTGC	1 cut(s)	163
BstBAI	YACGTR	2 cut(s)	536, 1136
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	5 cut(s)	11, 306, 815, 870, 1614
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	6 cut(s)	459, 1186, 1393, 1473, 1480, 1528
BstHHI	GCGC	1 cut(s)	641
BstMAI	GTCTC	2 cut(s)	597, 951
BstMWI	GCNNNNNNNGC	4 cut(s)	163, 244, 476, 980
BstNI	CCWGG	6 cut(s)	117, 254, 359, 660, 680, 963
BstNSI	RCATGY	2 cut(s)	614, 712
BstSCI	CCNGG	6 cut(s)	115, 252, 357, 658, 678, 961
BstSFI	CTRYAG	3 cut(s)	984, 1242, 1598
BstV1I	GCAGC	3 cut(s)	150, 851, 1584
BstX2I	RGATCY	5 cut(s)	112, 748, 844, 1051, 1204
BstYI	RGATCY	5 cut(s)	112, 748, 844, 1051, 1204
BsuRI	GGCC	4 cut(s)	247, 663, 721, 1473
BtsCI	GGATG	6 cut(s)	459, 1186, 1393, 1473, 1480, 1528
BtsI	GCAGTG	1 cut(s)	1607
BtsIMutI	CAGTG	3 cut(s)	402, 867, 1607
BveI	ACCTGC	2 cut(s)	1235, 1249
Cac8I	GCNNGC	1 cut(s)	448
CfoI	GCGC	1 cut(s)	641
Cfr13I	GGNCC	4 cut(s)	282, 720, 1105, 1471
Csp6I	GTAC	2 cut(s)	712, 737
CviQI	GTAC	2 cut(s)	712, 737
DdeI	CTNAG	5 cut(s)	11, 306, 815, 870, 1614
Eam1104I	CTCTTC	1 cut(s)	1334
EarI	CTCTTC	1 cut(s)	1334
EciI	GGCGGA	1 cut(s)	1535
Eco130I	CCWWGG	1 cut(s)	1485
Eco24I	GRGCYC	1 cut(s)	365
Eco31I	GGTCTC	1 cut(s)	951
Eco47I	GGWCC	2 cut(s)	282, 1105
Eco57I	CTGAAG	3 cut(s)	1251, 1302, 1315
Eco88I	CYCGRG	1 cut(s)	1462
EcoNI	CCTNNNNNAGG	1 cut(s)	257
EcoRII	CCWGG	6 cut(s)	115, 252, 357, 658, 678, 961
EcoT14I	CCWWGG	1 cut(s)	1485
EcoT38I	GRGCYC	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	1485
FaqI	GGGAC	1 cut(s)	979
Fnu4HI	GCNGC	3 cut(s)	164, 840, 1598
FokI	GGATG	6 cut(s)	446, 1193, 1400, 1467, 1480, 1535
FriOI	GRGCYC	1 cut(s)	365
Fsp4HI	GCNGC	3 cut(s)	164, 840, 1598
FspBI	CTAG	1 cut(s)	731
GlaI	GCGC	1 cut(s)	640
GluI	GCNGC	3 cut(s)	164, 840, 1598
HaeIII	GGCC	4 cut(s)	247, 663, 721, 1473
HapII	CCGG	1 cut(s)	170
HhaI	GCGC	1 cut(s)	641
Hin1I	GRCGYC	1 cut(s)	105
Hin6I	GCGC	1 cut(s)	639
HinP1I	GCGC	1 cut(s)	639
HincII	GTYRAC	3 cut(s)	214, 616, 1087
HindII	GTYRAC	3 cut(s)	214, 616, 1087
HindIII	AAGCTT	2 cut(s)	812, 878
HinfI	GANTC	6 cut(s)	143, 332, 931, 967, 1542, 1568
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	3 cut(s)	419, 532, 1372
Hpy166II	GTNNAC	4 cut(s)	214, 616, 1087, 1139
Hpy188I	TCNGA	4 cut(s)	12, 956, 1334, 1563
Hpy188III	TCNNGA	5 cut(s)	170, 197, 935, 1229, 1373
Hpy8I	GTNNAC	4 cut(s)	214, 616, 1087, 1139
HpyAV	CCTTC	4 cut(s)	406, 894, 1226, 1286
HpyCH4III	ACNGT	2 cut(s)	499, 1084
HpyCH4IV	ACGT	3 cut(s)	105, 535, 1135
HpyCH4V	TGCA	8 cut(s)	157, 270, 278, 470, 517, 1244, 1480, 1600
HpyF10VI	GCNNNNNNNGC	4 cut(s)	163, 244, 476, 980
HpyF3I	CTNAG	5 cut(s)	11, 306, 815, 870, 1614
HpySE526I	ACGT	3 cut(s)	105, 535, 1135
Hsp92I	GRCGYC	1 cut(s)	105
HspAI	GCGC	1 cut(s)	639
Kpn2I	TCCGGA	1 cut(s)	169
LmnI	GCTCC	4 cut(s)	368, 682, 836, 1231
Lsp1109I	GCAGC	3 cut(s)	150, 851, 1584
LweI	GCATC	5 cut(s)	634, 1105, 1176, 1464, 1489
MaeI	CTAG	1 cut(s)	731
MaeII	ACGT	3 cut(s)	105, 535, 1135
MaeIII	GTNAC	3 cut(s)	400, 1078, 1131
MboII	GAAGA	6 cut(s)	1214, 1295, 1321, 1359, 1375, 1551
MflI	RGATCY	5 cut(s)	112, 748, 844, 1051, 1204
MhlI	GDGCHC	1 cut(s)	365
MlyI	GAGTC	2 cut(s)	961, 1562
MroI	TCCGGA	1 cut(s)	169
MseI	TTAA	7 cut(s)	189, 222, 474, 626, 690, 942, 1173
MspA1I	CMGCKG	1 cut(s)	899
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	6 cut(s)	117, 254, 359, 660, 680, 963
Mva1269I	GAATGC	1 cut(s)	6
MvaI	CCWGG	6 cut(s)	117, 254, 359, 660, 680, 963
MwoI	GCNNNNNNNGC	4 cut(s)	163, 244, 476, 980
NlaIV	GGNNCC	7 cut(s)	114, 364, 558, 750, 1107, 1227, 1416
NmuCI	GTSAC	2 cut(s)	400, 1078
NspI	RCATGY	2 cut(s)	614, 712
PaeR7I	CTCGAG	1 cut(s)	1462
PaqCI	CACCTGC	2 cut(s)	1235, 1249
PasI	CCCWGGG	2 cut(s)	358, 962
PciI	ACATGT	2 cut(s)	610, 708
PctI	GAATGC	1 cut(s)	6
PfeI	GAWTC	4 cut(s)	143, 332, 931, 1542
PfoI	TCCNGGA	1 cut(s)	678
PkrI	GCNGC	3 cut(s)	165, 841, 1599
PleI	GAGTC	2 cut(s)	961, 1562
PpsI	GAGTC	2 cut(s)	961, 1562
Ppu21I	YACGTR	2 cut(s)	536, 1136
PscI	ACATGT	2 cut(s)	610, 708
PsiI	TTATAA	1 cut(s)	800
Psp6I	CCWGG	6 cut(s)	115, 252, 357, 658, 678, 961
PspGI	CCWGG	6 cut(s)	115, 252, 357, 658, 678, 961
PspN4I	GGNNCC	7 cut(s)	114, 364, 558, 750, 1107, 1227, 1416
PspPI	GGNCC	4 cut(s)	282, 720, 1105, 1471
PspXI	VCTCGAGB	1 cut(s)	1462
PstI	CTGCAG	2 cut(s)	1246, 1602
PsuI	RGATCY	5 cut(s)	112, 748, 844, 1051, 1204
PvuII	CAGCTG	1 cut(s)	899
RsaI	GTAC	2 cut(s)	713, 738
RsaNI	GTAC	2 cut(s)	712, 737
SaqAI	TTAA	7 cut(s)	189, 222, 474, 626, 690, 942, 1173
SatI	GCNGC	3 cut(s)	164, 840, 1598
Sau96I	GGNCC	4 cut(s)	282, 720, 1105, 1471
SbfI	CCTGCAGG	1 cut(s)	1246
SchI	GAGTC	2 cut(s)	961, 1562
ScrFI	CCNGG	6 cut(s)	117, 254, 359, 660, 680, 963
SdaI	CCTGCAGG	1 cut(s)	1246
SduI	GDGCHC	1 cut(s)	365
SfaNI	GCATC	5 cut(s)	634, 1105, 1176, 1464, 1489
SfcI	CTRYAG	3 cut(s)	984, 1242, 1598
Sfr274I	CTCGAG	1 cut(s)	1462
SinI	GGWCC	2 cut(s)	282, 1105
SlaI	CTCGAG	1 cut(s)	1462
SmlI	CTYRAG	3 cut(s)	860, 969, 1462
SmoI	CTYRAG	3 cut(s)	860, 969, 1462
Sse8387I	CCTGCAGG	1 cut(s)	1246
SsiI	CCGC	2 cut(s)	33, 1520
SspMI	CTAG	1 cut(s)	731
StyD4I	CCNGG	6 cut(s)	115, 252, 357, 658, 678, 961
StyI	CCWWGG	1 cut(s)	1485
TaaI	ACNGT	2 cut(s)	499, 1084
TaiI	ACGT	3 cut(s)	108, 538, 1138
TaqI	TCGA	3 cut(s)	17, 53, 1463
TfiI	GAWTC	4 cut(s)	143, 332, 931, 1542
Tru1I	TTAA	7 cut(s)	189, 222, 474, 626, 690, 942, 1173
Tru9I	TTAA	7 cut(s)	189, 222, 474, 626, 690, 942, 1173
TscAI	CASTG	3 cut(s)	409, 874, 1607
TseFI	GTSAC	2 cut(s)	400, 1078
TseI	GCWGC	3 cut(s)	163, 839, 1597
Tsp45I	GTSAC	2 cut(s)	400, 1078
TspDTI	ATGAA	8 cut(s)	73, 452, 560, 1046, 1215, 1290, 1427, 1563
TspGWI	ACGGA	1 cut(s)	325
TspRI	CASTG	3 cut(s)	409, 874, 1607
VpaK11BI	GGWCC	2 cut(s)	282, 1105
XagI	CCTNNNNNAGG	1 cut(s)	257
XapI	RAATTY	3 cut(s)	227, 312, 582
XceI	RCATGY	2 cut(s)	614, 712
XcmI	CCANNNNNNNNNTGG	2 cut(s)	502, 550
XhoI	CTCGAG	1 cut(s)	1462
XspI	CTAG	1 cut(s)	731
ZraI	GACGTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.