Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008282

Physical Location & Seq

Genomic Coordinates Forward (+)

482416 .. 483734

Gene Structure 1319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g00910.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGTTTATGATTGGGAAAAGATTGGCAAACATGACAAGATGGGTATAAATGTCATTCCACTGAAAGAACTTACGCCTGAAGAGCCTAAAGTTATGACTCTTGACGTGCTGAAGAACATGGACCTGAATGATACTCAAAATGAGAAATCACGTGGGCAGCTTGTTGTGGAATTGATCTATAAACCCTTTACACAGGATGAGATGCCTAAAGATGATGAAGATCCAAATGCTATAGAAAAGGCTCCTGAAGGAACACCTGCAACTGGTGGTGTGCTTGTAATTACCGTCCACGAAGCTGAAGATGTGGAAGGAAAGCACCACACTAACCCACAAGTGCGCATACTTTTCAGAGGGGAAGAGAAAAGAACCAAGCTTGTCAAGAAAAATCGGGATCCAAGATGGGATGAGGAGTTTCAGTTTATTTTAGAAGAGCCACCGAAAAATGATAGGCTTCATGTTGAAGTGGTCAGCCACTCCACAAGGATGGGGCTGTTGCATCCCAAGGAAACTCTTGGATACGTGGATATAAACTTGGCGGATGTTGTTAGCAACAGAAGAATCAATGAAAAATACCATTTGATAGACTCGAAGAATGGACGCCTTCAACTCGAGCTGCAATGGAGAACATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044232 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

212

Amino Acids

24.45

Weight (kDa)

5.55

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20080 AT1G20080 AT1G20080 AT1G20080 AT1G20080
fragaria_vesca	FvH4_2g38220
malus_domestica	MD08G1010600.v1.1 MD15G1010700.v1.1
prunus_persica	Prupe.1G363200_v2.0.a1 Prupe.1G363200_v2.0.a1
pyrus_communis	pycom08g00920 pycom15g00900 pycom15g00910
rosa_chinensis	RchiOBHm_Chr6g0303161
rosa_laevigata	RLG00000011101
rosa_multiflora	Rmu_sc0007936.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164960
rosa_rugosa	Rorug06G0319500 Rorug06G0319600
rosa_samantha	Rh6AG433500 Rh6BG469200 Rh6DG432600
rosa_wichuraiana	Rw6G037590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
Acc16I	TGCGCA	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	265
AciI	CCGC	1 cut(s)	536
AclWI	GGATC	3 cut(s)	215, 386, 399
AcuI	CTGAAG	4 cut(s)	99, 131, 267, 318
AcvI	CACGTG	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	598
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	461, 605
AjiI	CACGTC	1 cut(s)	106
AluBI	AGCT	4 cut(s)	160, 296, 373, 613
AluI	AGCT	4 cut(s)	160, 296, 373, 613
AlwI	GGATC	3 cut(s)	215, 386, 399
Ama87I	CYCGRG	1 cut(s)	608
ApeKI	GCWGC	2 cut(s)	157, 613
Asp700I	GAANNNNTTC	1 cut(s)	628
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	121
AvaI	CYCGRG	1 cut(s)	608
AvaII	GGWCC	1 cut(s)	121
BamHI	GGATCC	1 cut(s)	391
BbrPI	CACGTG	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	169, 600
BccI	CCATC	3 cut(s)	34, 393, 478
BciVI	GTATCC	1 cut(s)	509
BfmI	CTRYAG	1 cut(s)	231
BfuAI	ACCTGC	1 cut(s)	265
BfuI	GTATCC	1 cut(s)	509
BisI	GCNGC	2 cut(s)	158, 614
BlsI	GCNGC	2 cut(s)	159, 615
Bme18I	GGWCC	1 cut(s)	121
BmeT110I	CYCGRG	1 cut(s)	608
BmgBI	CACGTC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	121
BmiI	GGNNCC	2 cut(s)	243, 393
BmsI	GCATC	2 cut(s)	192, 505
BsaAI	YACGTR	2 cut(s)	152, 520
BsaBI	GATNNNNATC	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	598
BsaJI	CCNNGG	1 cut(s)	501
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	623
Bse8I	GATNNNNATC	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	501
BseGI	GGATG	5 cut(s)	202, 409, 489, 496, 544
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	623
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	2 cut(s)	169, 600
BsiHKCI	CYCGRG	1 cut(s)	608
BslI	CCNNNNNNNGG	1 cut(s)	263
BsoBI	CYCGRG	1 cut(s)	608
Bsp143I	GATC	3 cut(s)	174, 220, 391
BspACI	CCGC	1 cut(s)	536
BspLI	GGNNCC	2 cut(s)	243, 393
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	3 cut(s)	215, 386, 399
BspQI	GCTCTTC	2 cut(s)	75, 423
BsrDI	GCAATG	1 cut(s)	623
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	501
BssMI	GATC	3 cut(s)	174, 220, 391
BssNI	GRCGYC	1 cut(s)	598
BssT1I	CCWWGG	1 cut(s)	501
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	3 cut(s)	75, 351, 423
BstACI	GRCGYC	1 cut(s)	598
BstBAI	YACGTR	2 cut(s)	152, 520
BstF5I	GGATG	5 cut(s)	202, 409, 489, 496, 544
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	3 cut(s)	177, 223, 394
BstMBI	GATC	3 cut(s)	174, 220, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	231
BstV1I	GCAGC	2 cut(s)	169, 600
BstX2I	RGATCY	2 cut(s)	220, 391
BstXI	CCANNNNNNTGG	1 cut(s)	484
BstYI	RGATCY	2 cut(s)	220, 391
BsuI	GTATCC	1 cut(s)	509
BtrI	CACGTC	1 cut(s)	106
BtsCI	GGATG	5 cut(s)	202, 409, 489, 496, 544
BtsIMutI	CAGTG	1 cut(s)	59
BveI	ACCTGC	1 cut(s)	265
CfoI	GCGC	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	121
CseI	GACGC	1 cut(s)	606
CviAII	CATG	3 cut(s)	32, 118, 455
DpnI	GATC	3 cut(s)	176, 222, 393
DpnII	GATC	3 cut(s)	174, 220, 391
Eam1104I	CTCTTC	3 cut(s)	75, 351, 423
EarI	CTCTTC	3 cut(s)	75, 351, 423
EciI	GGCGGA	1 cut(s)	551
Eco130I	CCWWGG	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	121
Eco57I	CTGAAG	4 cut(s)	99, 131, 267, 318
Eco72I	CACGTG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	608
EcoT14I	CCWWGG	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	501
FaeI	CATG	3 cut(s)	35, 121, 458
FatI	CATG	3 cut(s)	31, 117, 454
Fnu4HI	GCNGC	2 cut(s)	158, 614
FokI	GGATG	5 cut(s)	209, 416, 483, 496, 551
Fsp4HI	GCNGC	2 cut(s)	158, 614
FspAI	RTGCGCAY	1 cut(s)	338
FspI	TGCGCA	1 cut(s)	338
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	2 cut(s)	158, 614
HgaI	GACGC	1 cut(s)	606
HhaI	GCGC	1 cut(s)	339
Hin1I	GRCGYC	1 cut(s)	598
Hin1II	CATG	3 cut(s)	35, 121, 458
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	3 cut(s)	97, 558, 584
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	1 cut(s)	350
Hpy188III	TCNNGA	5 cut(s)	101, 245, 379, 389, 633
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	3 cut(s)	242, 302, 611
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	3 cut(s)	105, 151, 519
HpyCH4V	TGCA	3 cut(s)	260, 496, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpySE526I	ACGT	3 cut(s)	105, 151, 519
Hsp92I	GRCGYC	1 cut(s)	598
Hsp92II	CATG	3 cut(s)	35, 121, 458
HspAI	GCGC	1 cut(s)	337
Kzo9I	GATC	3 cut(s)	174, 220, 391
LguI	GCTCTTC	2 cut(s)	75, 423
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	6 cut(s)	90, 137, 179, 249, 258, 270
Lsp1109I	GCAGC	2 cut(s)	169, 600
LweI	GCATC	2 cut(s)	192, 505
MaeII	ACGT	3 cut(s)	105, 151, 519
MalI	GATC	3 cut(s)	176, 222, 393
MboI	GATC	3 cut(s)	174, 220, 391
MboII	GAAGA	9 cut(s)	92, 124, 230, 311, 368, 440, 567, 601, 621
MflI	RGATCY	2 cut(s)	220, 391
MluCI	AATT	2 cut(s)	170, 279
MlyI	GAGTC	2 cut(s)	91, 578
MnlI	CCTC	2 cut(s)	344, 400
MroXI	GAANNNNTTC	1 cut(s)	628
MslI	CAYNNNNRTG	1 cut(s)	482
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeII	GATC	3 cut(s)	174, 220, 391
NlaIII	CATG	3 cut(s)	35, 121, 458
NlaIV	GGNNCC	2 cut(s)	243, 393
NsbI	TGCGCA	1 cut(s)	338
PaeR7I	CTCGAG	1 cut(s)	608
PaqCI	CACCTGC	1 cut(s)	265
PciSI	GCTCTTC	2 cut(s)	75, 423
PdmI	GAANNNNTTC	1 cut(s)	628
PfeI	GAWTC	1 cut(s)	558
PkrI	GCNGC	2 cut(s)	159, 615
PleI	GAGTC	2 cut(s)	91, 578
PmaCI	CACGTG	1 cut(s)	152
PmlI	CACGTG	1 cut(s)	152
PpsI	GAGTC	2 cut(s)	91, 578
Ppu21I	YACGTR	2 cut(s)	152, 520
PspCI	CACGTG	1 cut(s)	152
PspN4I	GGNNCC	2 cut(s)	243, 393
PspPI	GGNCC	1 cut(s)	121
PspXI	VCTCGAGB	1 cut(s)	608
PsuI	RGATCY	2 cut(s)	220, 391
RseI	CAYNNNNRTG	1 cut(s)	482
SapI	GCTCTTC	2 cut(s)	75, 423
SatI	GCNGC	2 cut(s)	158, 614
Sau3AI	GATC	3 cut(s)	174, 220, 391
Sau96I	GGNCC	1 cut(s)	121
SchI	GAGTC	2 cut(s)	91, 578
SetI	ASST	9 cut(s)	108, 126, 154, 162, 259, 298, 375, 522, 615
SfaNI	GCATC	2 cut(s)	192, 505
SfcI	CTRYAG	1 cut(s)	231
Sfr274I	CTCGAG	1 cut(s)	608
SinI	GGWCC	1 cut(s)	121
SlaI	CTCGAG	1 cut(s)	608
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
Sse9I	AATT	2 cut(s)	170, 279
SsiI	CCGC	1 cut(s)	536
StyI	CCWWGG	1 cut(s)	501
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	3 cut(s)	108, 154, 522
TaqI	TCGA	2 cut(s)	587, 609
TasI	AATT	2 cut(s)	170, 279
TfiI	GAWTC	1 cut(s)	558
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	2 cut(s)	157, 613
TspDTI	ATGAA	3 cut(s)	231, 443, 579
TspRI	CASTG	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	121
XhoI	CTCGAG	1 cut(s)	608
XmnI	GAANNNNTTC	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.