Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008282

Physical Location & Seq

Genomic Coordinates Forward (+)

479979 .. 482287

Gene Structure 2309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g00900.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGGTATTCTGAGTGCGATTTTGGGTTTTGTGGGTTTTGGAGTTGGAACTTCAATTGGGCTTGTGATCGGGTATTACCTCTTCATCTACTTCCAGCCAACTGATGTCAAGGATCCTGCAATTCGTCCATTGGTGGAGCAAGATTCGAAAACTCTGCAGAGGCTGCTTCCGGAGATACCCATGTGGGTGAAAAATCCAGACTATGATCGTGTTGACTGGCTTAACAAATTTATCGAGCTCATGTGGCCTTACCTCGACAAGGCAATTTGCAAAACTGCGAGGACCATAGCAAAACCCATTATTGCTGAGCAAATTCCGAAATACAAAATTGACTCCGTCGAGTTTGAAGCTCTTTCCTTGGGCACCCTACCGCCAACTTTTCAAGGAATTAAAGTGTATGTTACTGGTGAGAAGGAATTGATAATGGAGCTACAACTGAAGTGGGCAGGCAATCCTAACATCCTTGTTGCGGCTAAAGCATTTGGTATGAAAGCCACGGTTCAGGTGGTTGATTTGCAAGTGTTTGCTTGTCCACGTATCACCCTGAAGCCTTTGGTTTCAGCCTTTCCTTGTTTTTCAAAAATCTTTGTCTCTCTTATGGAGAAGCCACATGTTGACTTTGGATTAAAACTGCTTGGAGCAGATGCTATGGCTATTCCTGGCCTGTATAGGTTTGTCCAGGAGCTTATCAAAGAACAAGTGGCAAACATGTACCTATGGCCCAAAGCCCTAGAAGTACAAATCATGGATCCCACAATGGCCATGAGGAAGCCTGTTGGGATTTTGCATATAAAAGTTATTAAAGCAATGAAGCTTAAAAAGAAAGATTTACTAGGAGGAGCACACGCTTACCTTGGATCGATCGATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044232 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

291

Amino Acids

32.5

Weight (kDa)

9.12

Isoelectric Point (pI)

22.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20080 AT1G20080 AT1G20080 AT1G20080 AT1G20080
fragaria_vesca	FvH4_2g38220
malus_domestica	MD08G1010600.v1.1 MD15G1010700.v1.1
prunus_persica	Prupe.1G363200_v2.0.a1 Prupe.1G363200_v2.0.a1
pyrus_communis	pycom08g00920 pycom15g00900 pycom15g00910
rosa_chinensis	RchiOBHm_Chr6g0303161
rosa_laevigata	RLG00000011101
rosa_multiflora	Rmu_sc0007936.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164960
rosa_rugosa	Rorug06G0319500 Rorug06G0319600
rosa_samantha	Rh6AG433500 Rh6BG469200 Rh6DG432600
rosa_wichuraiana	Rw6G037590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	362
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	2 cut(s)	371, 470
AclWI	GGATC	5 cut(s)	107, 120, 743, 756, 865
AcoI	YGGCCR	1 cut(s)	759
AcsI	RAATTY	2 cut(s)	227, 312
AcuI	CTGAAG	2 cut(s)	458, 566
AfaI	GTAC	2 cut(s)	713, 738
AfiI	CCNNNNNNNGG	2 cut(s)	259, 469
AflIII	ACRYGT	2 cut(s)	610, 708
AgsI	TTSAA	4 cut(s)	54, 347, 383, 579
AjnI	CCWGG	2 cut(s)	658, 678
AluBI	AGCT	5 cut(s)	238, 350, 430, 685, 814
AluI	AGCT	5 cut(s)	238, 350, 430, 685, 814
Alw21I	GWGCWC	2 cut(s)	240, 844
Alw26I	GTCTC	1 cut(s)	595
AlwI	GGATC	5 cut(s)	107, 120, 743, 756, 865
AlwNI	CAGNNNCTG	1 cut(s)	163
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	4 cut(s)	245, 661, 719, 759
ApeKI	GCWGC	1 cut(s)	163
ApoI	RAATTY	2 cut(s)	227, 312
AspS9I	GGNCC	2 cut(s)	282, 720
AsuHPI	GGTGA	3 cut(s)	199, 419, 532
AsuII	TTCGAA	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	282
BaeGI	GKGCMC	1 cut(s)	365
BaeI	ACNNNNGTAYC	2 cut(s)	167, 200
BalI	TGGCCA	1 cut(s)	761
BamHI	GGATCC	2 cut(s)	112, 748
BanI	GGYRCC	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	240
BarI	GAAGNNNNNNTAC	2 cut(s)	65, 97
Bbv12I	GWGCWC	2 cut(s)	240, 844
BbvI	GCAGC	1 cut(s)	150
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	2 cut(s)	660, 680
BcoDI	GTCTC	1 cut(s)	595
BfaI	CTAG	2 cut(s)	731, 833
BfmI	CTRYAG	1 cut(s)	155
BisI	GCNGC	2 cut(s)	164, 471
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	2 cut(s)	165, 472
Bme1390I	CCNGG	2 cut(s)	660, 680
Bme18I	GGWCC	1 cut(s)	282
BmgT120I	GGNCC	2 cut(s)	282, 720
BmiI	GGNNCC	3 cut(s)	114, 364, 750
BmrFI	CCNGG	2 cut(s)	660, 680
BmsI	GCATC	1 cut(s)	634
Bpu1102I	GCTNAGC	1 cut(s)	306
Bpu14I	TTCGAA	1 cut(s)	146
Bsa29I	ATCGAT	2 cut(s)	860, 864
BsaAI	YACGTR	1 cut(s)	536
BsaJI	CCNNGG	3 cut(s)	357, 495, 853
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 469
Bse1I	ACTGG	2 cut(s)	221, 409
Bse3DI	GCAATG	1 cut(s)	813
BseAI	TCCGGA	1 cut(s)	169
BseBI	CCWGG	2 cut(s)	660, 680
BseCI	ATCGAT	2 cut(s)	860, 864
BseDI	CCNNGG	3 cut(s)	357, 495, 853
BseGI	GGATG	1 cut(s)	459
BseLI	CCNNNNNNNGG	2 cut(s)	259, 469
BseMI	GCAATG	1 cut(s)	813
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	2 cut(s)	221, 409
BseRI	GAGGAG	1 cut(s)	852
BseSI	GKGCMC	1 cut(s)	365
BseXI	GCAGC	1 cut(s)	150
Bsh1285I	CGRYCG	1 cut(s)	864
BshFI	GGCC	4 cut(s)	247, 663, 721, 761
BshNI	GGYRCC	1 cut(s)	362
BshVI	ATCGAT	2 cut(s)	860, 864
BsiEI	CGRYCG	1 cut(s)	864
BsiHKAI	GWGCWC	2 cut(s)	240, 844
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	259, 469
BsmAI	GTCTC	1 cut(s)	595
BsnI	GGCC	4 cut(s)	247, 663, 721, 761
Bsp119I	TTCGAA	1 cut(s)	146
Bsp1286I	GDGCHC	3 cut(s)	240, 365, 844
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	7 cut(s)	66, 112, 205, 748, 857, 861, 865
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	2 cut(s)	371, 470
BspANI	GGCC	4 cut(s)	247, 663, 721, 761
BspCNI	CTCAG	1 cut(s)	298
BspDI	ATCGAT	2 cut(s)	860, 864
BspEI	TCCGGA	1 cut(s)	169
BspLI	GGNNCC	3 cut(s)	114, 364, 750
BspMAI	CTGCAG	1 cut(s)	159
BspPI	GGATC	5 cut(s)	107, 120, 743, 756, 865
BspT104I	TTCGAA	1 cut(s)	146
BspT107I	GGYRCC	1 cut(s)	362
BsrDI	GCAATG	1 cut(s)	813
BsrI	ACTGG	2 cut(s)	221, 409
BssECI	CCNNGG	3 cut(s)	357, 495, 853
BssMI	GATC	7 cut(s)	66, 112, 205, 748, 857, 861, 865
BssT1I	CCWWGG	2 cut(s)	357, 853
Bst2UI	CCWGG	2 cut(s)	660, 680
Bst4CI	ACNGT	1 cut(s)	499
Bst6I	CTCTTC	1 cut(s)	86
BstAPI	GCANNNNNTGC	1 cut(s)	163
BstBAI	YACGTR	1 cut(s)	536
BstBI	TTCGAA	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	2 cut(s)	11, 306
BstDSI	CCRYGG	1 cut(s)	495
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	459
BstKTI	GATC	7 cut(s)	69, 115, 208, 751, 860, 864, 868
BstMAI	GTCTC	1 cut(s)	595
BstMBI	GATC	7 cut(s)	66, 112, 205, 748, 857, 861, 865
BstMCI	CGRYCG	1 cut(s)	864
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 244, 476
BstNI	CCWGG	2 cut(s)	660, 680
BstNSI	RCATGY	2 cut(s)	614, 712
BstSCI	CCNGG	2 cut(s)	658, 678
BstSFI	CTRYAG	1 cut(s)	155
BstSLI	GKGCMC	1 cut(s)	365
BstV1I	GCAGC	1 cut(s)	150
BstX2I	RGATCY	2 cut(s)	112, 748
BstYI	RGATCY	2 cut(s)	112, 748
Bsu15I	ATCGAT	2 cut(s)	860, 864
BsuRI	GGCC	4 cut(s)	247, 663, 721, 761
BsuTUI	ATCGAT	2 cut(s)	860, 864
BtgI	CCRYGG	1 cut(s)	495
BtsCI	GGATG	1 cut(s)	459
Cac8I	GCNNGC	1 cut(s)	448
CaiI	CAGNNNCTG	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	282, 720
ClaI	ATCGAT	2 cut(s)	860, 864
Csp6I	GTAC	2 cut(s)	712, 737
CspCI	CAANNNNNGTGG	2 cut(s)	422, 457
CviAII	CATG	6 cut(s)	181, 241, 611, 709, 745, 763
CviQI	GTAC	2 cut(s)	712, 737
DdeI	CTNAG	2 cut(s)	11, 306
DpnI	GATC	7 cut(s)	68, 114, 207, 750, 859, 863, 867
DpnII	GATC	7 cut(s)	66, 112, 205, 748, 857, 861, 865
EaeI	YGGCCR	1 cut(s)	759
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	2 cut(s)	357, 853
Eco24I	GRGCYC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	282
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	2 cut(s)	458, 566
EcoICRI	GAGCTC	1 cut(s)	238
EcoNI	CCTNNNNNAGG	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	658, 678
EcoT14I	CCWWGG	2 cut(s)	357, 853
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	2 cut(s)	357, 853
FaeI	CATG	6 cut(s)	184, 244, 614, 712, 748, 766
FatI	CATG	6 cut(s)	180, 240, 610, 708, 744, 762
Fnu4HI	GCNGC	2 cut(s)	164, 471
FokI	GGATG	1 cut(s)	446
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	2 cut(s)	164, 471
FspBI	CTAG	2 cut(s)	731, 833
GluI	GCNGC	2 cut(s)	164, 471
HaeIII	GGCC	4 cut(s)	247, 663, 721, 761
HapII	CCGG	1 cut(s)	170
Hin1II	CATG	6 cut(s)	184, 244, 614, 712, 748, 766
HincII	GTYRAC	2 cut(s)	214, 616
HindII	GTYRAC	2 cut(s)	214, 616
HindIII	AAGCTT	1 cut(s)	812
HinfI	GANTC	2 cut(s)	143, 332
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	3 cut(s)	199, 419, 532
Hpy166II	GTNNAC	3 cut(s)	214, 533, 616
Hpy188I	TCNGA	2 cut(s)	12, 318
Hpy188III	TCNNGA	2 cut(s)	170, 197
Hpy8I	GTNNAC	3 cut(s)	214, 533, 616
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4IV	ACGT	1 cut(s)	535
HpyCH4V	TGCA	5 cut(s)	119, 157, 270, 517, 787
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 244, 476
HpyF3I	CTNAG	2 cut(s)	11, 306
HpySE526I	ACGT	1 cut(s)	535
Hsp92II	CATG	6 cut(s)	184, 244, 614, 712, 748, 766
Kpn2I	TCCGGA	1 cut(s)	169
Kzo9I	GATC	7 cut(s)	66, 112, 205, 748, 857, 861, 865
LmnI	GCTCC	5 cut(s)	136, 427, 638, 682, 839
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	1 cut(s)	634
MaeI	CTAG	2 cut(s)	731, 833
MaeII	ACGT	1 cut(s)	535
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	7 cut(s)	68, 114, 207, 750, 859, 863, 867
MboI	GATC	7 cut(s)	66, 112, 205, 748, 857, 861, 865
MboII	GAAGA	1 cut(s)	73
MfeI	CAATTG	1 cut(s)	54
MflI	RGATCY	2 cut(s)	112, 748
MhlI	GDGCHC	3 cut(s)	240, 365, 844
MlsI	TGGCCA	1 cut(s)	761
MluCI	AATT	8 cut(s)	54, 120, 227, 264, 312, 327, 387, 416
MluNI	TGGCCA	1 cut(s)	761
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	25
MnlI	CCTC	6 cut(s)	89, 153, 263, 273, 759, 830
Mox20I	TGGCCA	1 cut(s)	761
MroI	TCCGGA	1 cut(s)	169
MscI	TGGCCA	1 cut(s)	761
MseI	TTAA	5 cut(s)	222, 390, 626, 801, 816
MslI	CAYNNNNRTG	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	761
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	2 cut(s)	660, 680
MunI	CAATTG	1 cut(s)	54
MvaI	CCWGG	2 cut(s)	660, 680
MwoI	GCNNNNNNNGC	3 cut(s)	163, 244, 476
NdeII	GATC	7 cut(s)	66, 112, 205, 748, 857, 861, 865
NlaIII	CATG	6 cut(s)	184, 244, 614, 712, 748, 766
NlaIV	GGNNCC	3 cut(s)	114, 364, 750
NspI	RCATGY	2 cut(s)	614, 712
NspV	TTCGAA	1 cut(s)	146
PciI	ACATGT	2 cut(s)	610, 708
PfeI	GAWTC	1 cut(s)	143
PflFI	GACNNNGTC	1 cut(s)	335
PfoI	TCCNGGA	1 cut(s)	678
PkrI	GCNGC	2 cut(s)	165, 472
Ple19I	CGATCG	1 cut(s)	864
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
Ppu21I	YACGTR	1 cut(s)	536
PscI	ACATGT	2 cut(s)	610, 708
Psp124BI	GAGCTC	1 cut(s)	240
Psp6I	CCWGG	2 cut(s)	658, 678
PspGI	CCWGG	2 cut(s)	658, 678
PspN4I	GGNNCC	3 cut(s)	114, 364, 750
PspPI	GGNCC	2 cut(s)	282, 720
PstI	CTGCAG	1 cut(s)	159
PstNI	CAGNNNCTG	1 cut(s)	163
PsuI	RGATCY	2 cut(s)	112, 748
PsyI	GACNNNGTC	1 cut(s)	335
PvuI	CGATCG	1 cut(s)	864
RsaI	GTAC	2 cut(s)	713, 738
RsaNI	GTAC	2 cut(s)	712, 737
RseI	CAYNNNNRTG	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	240
SaqAI	TTAA	5 cut(s)	222, 390, 626, 801, 816
SatI	GCNGC	2 cut(s)	164, 471
Sau3AI	GATC	7 cut(s)	66, 112, 205, 748, 857, 861, 865
Sau96I	GGNCC	2 cut(s)	282, 720
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	2 cut(s)	660, 680
SduI	GDGCHC	3 cut(s)	240, 365, 844
SfaNI	GCATC	1 cut(s)	634
SfcI	CTRYAG	1 cut(s)	155
SfuI	TTCGAA	1 cut(s)	146
SinI	GGWCC	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	8 cut(s)	54, 120, 227, 264, 312, 327, 387, 416
SsiI	CCGC	2 cut(s)	371, 470
SspMI	CTAG	2 cut(s)	731, 833
SstI	GAGCTC	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	658, 678
StyI	CCWWGG	2 cut(s)	357, 853
TaaI	ACNGT	1 cut(s)	499
TaiI	ACGT	1 cut(s)	538
TaqI	TCGA	6 cut(s)	146, 234, 255, 339, 860, 864
TasI	AATT	8 cut(s)	54, 120, 227, 264, 312, 327, 387, 416
TatI	WGTACW	1 cut(s)	736
TauI	GCSGC	1 cut(s)	473
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	5 cut(s)	222, 390, 626, 801, 816
Tru9I	TTAA	5 cut(s)	222, 390, 626, 801, 816
TseI	GCWGC	1 cut(s)	163
TspDTI	ATGAA	3 cut(s)	73, 503, 824
TspGWI	ACGGA	1 cut(s)	325
Tth111I	GACNNNGTC	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	282
XagI	CCTNNNNNAGG	1 cut(s)	257
XapI	RAATTY	2 cut(s)	227, 312
XceI	RCATGY	2 cut(s)	614, 712
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XspI	CTAG	2 cut(s)	731, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.