Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008282

Physical Location & Seq

Genomic Coordinates Forward (+)

67703340 .. 67708715

Gene Structure 5376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG469200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGGGTATTCTGAGTTCTATACTGGGTTTTTGTGGTTTTGGAATTGGAACTTCAATTGGACTTGTGATCGGGTATTACATGTTCATCTACTTCCAGCCTACTGATGTTAAGCATCCTCTGATTCGTCCTATGGTTGAGCAAGATTCGGAAACGTTGCAACGGATGCTTTCGGAGATCCCCTTGTGGGTTAAAAACCCAGACTATGATCGTCTTGACTGGCTTAACAAATTTGTTGAGATTATGTGGCCTTATCTGGACAAGGCAATTTGCAAGACTGCAAAGACCATAGCAAAGCCCATTATTGCTGAGCAAATTCCAAAATATAAAATCGACTCTGTTGATTTTGAAGTACTTACATTGGGCACCCTACCACCAACTTTTCAAGGAATGAAAGTTTATGTCACTGGTGAGAAGGAATTAATTATGGAACTATCCTTGAAGTGGGCAGGAAATCCTAACATTACTGTTGCAGCTAAAGCATTTGGGTTGAAAGCCACAGTTCAGGTGGTTGACTTGCAAGTGTTTGCGTCCCCACGTATCACCCTGAAGCCTCTGGTTCCGACCTTTCCTTGTTTTTCAAAAATCTTTGTTTCTCTTATGGAGAAGCCACATGTTGACTTCGGACTAAAACTCCTTGGAGCAGATGCAATGGCTATTCCAGGCCTGTATAGGTTTGTGCAGGAGCTTATTAAGGATCAAGTGGCAAATATGTACCTATGGCCCAAATACCTAGAAGTAACTATCATGGATCCCAAACTTGCCATGAGGAAACCCGTTGGGATTCTCACTGTAAAGGTTCTGAAGGCCACAAAACTCAAAAAGAAAGATTTAATGGGAGGAGCAGATCCTTATGTAAAACTCAAGCTGACTGAGGACAAGCTTCCTTCAAAGAAAACAACAGTGAAACACAAAACTTTGAACCCTGAATGGAATGAGGAATTTCATTTGTCTGTTAGAGACCCTGAAACTCAAGCATTGGAATTTATGGTTTATGATTGGGAAAAGGTTGGCCGACACGATAAGATGGGTATAAATGTTATTCCCTTGAGCGAACTTACTCCTGATGAGTCTAAAGTTATGACTCTTGACATACTGAAAAACATGGACCCAAATGATGCTCAAAATGAGAAGTCGCGTGGACAGCTTGTTCTGGAACTGCTCTATAAACCCTTCAAGGAGGATGAGATGCCTGAAGATAAGGAAGATTCAAATGAGGTACAGAAGGCTCCTGAAGGAACTCCTGCAAGTGGTGGTCTGCTTGTAGTACACATCCATGAAGCTGAAGATTTGGAAGGAAAGCACCACACTAATCCACATGTGCGATTACTATTCAAAGGGGAGGAGAGAAGAACCAAGGTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044232 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

454

Amino Acids

51.61

Weight (kDa)

6.59

Isoelectric Point (pI)

26.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP_LBD	PF17047	67 - 247	1.6e-16	Synaptotagmin-like mitochondrial-lipid-binding domain
C2	PF00168	260 - 358	4.5e-27	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20080 AT1G20080 AT1G20080 AT1G20080 AT1G20080
fragaria_vesca	FvH4_2g38220
malus_domestica	MD08G1010600.v1.1 MD15G1010700.v1.1
prunus_persica	Prupe.1G363200_v2.0.a1 Prupe.1G363200_v2.0.a1
pyrus_communis	pycom08g00920 pycom15g00900 pycom15g00910
rosa_chinensis	RchiOBHm_Chr6g0303161
rosa_laevigata	RLG00000011101
rosa_multiflora	Rmu_sc0007936.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164960
rosa_rugosa	Rorug06G0319500 Rorug06G0319600
rosa_samantha	Rh6AG433500 Rh6BG469200 Rh6DG432600
rosa_wichuraiana	Rw6G037590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	362
AccII	CGCG	1 cut(s)	1135
AclI	AACGTT	1 cut(s)	152
AclWI	GGATC	5 cut(s)	169, 702, 743, 756, 839
AcoI	YGGCCR	1 cut(s)	1009
AcsI	RAATTY	4 cut(s)	227, 312, 938, 980
AcuI	CTGAAG	5 cut(s)	566, 821, 1212, 1251, 1302
AfaI	GTAC	4 cut(s)	351, 713, 1218, 1266
AfiI	CCNNNNNNNGG	3 cut(s)	184, 441, 1247
AflIII	ACRYGT	3 cut(s)	78, 610, 1315
AjnI	CCWGG	1 cut(s)	658
AloI	GAACNNNNNNTCC	2 cut(s)	1131, 1163
AluBI	AGCT	6 cut(s)	473, 685, 865, 880, 1144, 1280
AluI	AGCT	6 cut(s)	473, 685, 865, 880, 1144, 1280
Alw26I	GTCTC	1 cut(s)	951
AlwI	GGATC	5 cut(s)	169, 702, 743, 756, 839
AoxI	GGCC	5 cut(s)	245, 661, 719, 804, 1009
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	4 cut(s)	227, 312, 938, 980
AseI	ATTAAT	1 cut(s)	419
AspS9I	GGNCC	2 cut(s)	720, 1105
AsuHPI	GGTGA	2 cut(s)	419, 532
AvaII	GGWCC	1 cut(s)	1105
BaeGI	GKGCMC	1 cut(s)	365
BamHI	GGATCC	1 cut(s)	748
BanI	GGYRCC	1 cut(s)	362
BbvI	GCAGC	1 cut(s)	482
BccI	CCATC	1 cut(s)	1018
BciT130I	CCWGG	1 cut(s)	660
BcoDI	GTCTC	1 cut(s)	951
BfaI	CTAG	1 cut(s)	731
BisI	GCNGC	1 cut(s)	471
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	472
BmcAI	AGTACT	1 cut(s)	351
Bme1390I	CCNGG	1 cut(s)	660
Bme18I	GGWCC	1 cut(s)	1105
BmgT120I	GGNCC	2 cut(s)	720, 1105
BmiI	GGNNCC	5 cut(s)	364, 558, 750, 1107, 1227
BmrFI	CCNGG	1 cut(s)	660
BmrI	ACTGGG	1 cut(s)	32
BmsI	GCATC	5 cut(s)	121, 153, 634, 1105, 1176
BmuI	ACTGGG	1 cut(s)	32
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	3 cut(s)	845, 954, 1066
BsaAI	YACGTR	1 cut(s)	536
BsaI	GGTCTC	1 cut(s)	951
BsaJI	CCNNGG	2 cut(s)	634, 1353
BsaXI	ACNNNNNCTCC	2 cut(s)	615, 645
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 441, 1247
Bse1I	ACTGG	3 cut(s)	27, 221, 409
Bse3DI	GCAATG	1 cut(s)	654
BseBI	CCWGG	1 cut(s)	660
BseDI	CCNNGG	2 cut(s)	634, 1353
BseGI	GGATG	4 cut(s)	112, 168, 1186, 1269
BseLI	CCNNNNNNNGG	3 cut(s)	184, 441, 1247
BseMI	GCAATG	1 cut(s)	654
BseMII	CTCAG	2 cut(s)	297, 861
BseNI	ACTGG	3 cut(s)	27, 221, 409
BseRI	GAGGAG	2 cut(s)	852, 1355
BseSI	GKGCMC	1 cut(s)	365
BseXI	GCAGC	1 cut(s)	482
BsgI	GTGCAG	1 cut(s)	698
Bsh1236I	CGCG	1 cut(s)	1135
BshFI	GGCC	5 cut(s)	247, 663, 721, 806, 1011
BshNI	GGYRCC	1 cut(s)	362
BslFI	GGGAC	1 cut(s)	514
BslI	CCNNNNNNNGG	3 cut(s)	184, 441, 1247
BsmAI	GTCTC	1 cut(s)	951
BsmFI	GGGAC	1 cut(s)	514
BsnI	GGCC	5 cut(s)	247, 663, 721, 806, 1011
Bso31I	GGTCTC	1 cut(s)	951
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp143I	GATC	6 cut(s)	66, 174, 205, 694, 748, 844
Bsp1720I	GCTNAGC	1 cut(s)	306
BspANI	GGCC	5 cut(s)	247, 663, 721, 806, 1011
BspCNI	CTCAG	2 cut(s)	298, 862
BspFNI	CGCG	1 cut(s)	1135
BspLI	GGNNCC	5 cut(s)	364, 558, 750, 1107, 1227
BspPI	GGATC	5 cut(s)	169, 702, 743, 756, 839
BspT107I	GGYRCC	1 cut(s)	362
BspTNI	GGTCTC	1 cut(s)	951
BsrDI	GCAATG	1 cut(s)	654
BsrI	ACTGG	3 cut(s)	27, 221, 409
BssECI	CCNNGG	2 cut(s)	634, 1353
BssMI	GATC	6 cut(s)	66, 174, 205, 694, 748, 844
BssT1I	CCWWGG	2 cut(s)	634, 1353
Bst2UI	CCWGG	1 cut(s)	660
Bst4CI	ACNGT	4 cut(s)	466, 499, 790, 901
BstAPI	GCANNNNNTGC	1 cut(s)	163
BstBAI	YACGTR	1 cut(s)	536
BstDEI	CTNAG	3 cut(s)	11, 306, 870
BstF5I	GGATG	4 cut(s)	112, 168, 1186, 1269
BstFNI	CGCG	1 cut(s)	1135
BstKTI	GATC	6 cut(s)	69, 177, 208, 697, 751, 847
BstMAI	GTCTC	1 cut(s)	951
BstMBI	GATC	6 cut(s)	66, 174, 205, 694, 748, 844
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 476, 1141
BstNI	CCWGG	1 cut(s)	660
BstNSI	RCATGY	3 cut(s)	82, 614, 1319
BstSCI	CCNGG	1 cut(s)	658
BstSLI	GKGCMC	1 cut(s)	365
BstUI	CGCG	1 cut(s)	1135
BstV1I	GCAGC	1 cut(s)	482
BstX2I	RGATCY	3 cut(s)	174, 748, 844
BstYI	RGATCY	3 cut(s)	174, 748, 844
BsuRI	GGCC	5 cut(s)	247, 663, 721, 806, 1011
BtsCI	GGATG	4 cut(s)	112, 168, 1186, 1269
BtsIMutI	CAGTG	3 cut(s)	402, 786, 906
Cfr13I	GGNCC	2 cut(s)	720, 1105
CseI	GACGC	1 cut(s)	516
Csp6I	GTAC	4 cut(s)	350, 712, 1217, 1265
CviAII	CATG	7 cut(s)	79, 611, 745, 763, 1102, 1274, 1316
CviQI	GTAC	4 cut(s)	350, 712, 1217, 1265
DdeI	CTNAG	3 cut(s)	11, 306, 870
DpnI	GATC	6 cut(s)	68, 176, 207, 696, 750, 846
DpnII	GATC	6 cut(s)	66, 174, 205, 694, 748, 844
EaeI	YGGCCR	1 cut(s)	1009
Eco130I	CCWWGG	2 cut(s)	634, 1353
Eco147I	AGGCCT	1 cut(s)	663
Eco31I	GGTCTC	1 cut(s)	951
Eco47I	GGWCC	1 cut(s)	1105
Eco57I	CTGAAG	5 cut(s)	566, 821, 1212, 1251, 1302
EcoRII	CCWGG	1 cut(s)	658
EcoT14I	CCWWGG	2 cut(s)	634, 1353
ErhI	CCWWGG	2 cut(s)	634, 1353
FaeI	CATG	7 cut(s)	82, 614, 748, 766, 1105, 1277, 1319
FaqI	GGGAC	1 cut(s)	514
FatI	CATG	7 cut(s)	78, 610, 744, 762, 1101, 1273, 1315
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	4 cut(s)	99, 175, 1193, 1256
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	1 cut(s)	731
GluI	GCNGC	1 cut(s)	471
HaeIII	GGCC	5 cut(s)	247, 663, 721, 806, 1011
HgaI	GACGC	1 cut(s)	516
Hin1II	CATG	7 cut(s)	82, 614, 748, 766, 1105, 1277, 1319
HincII	GTYRAC	2 cut(s)	511, 616
HindII	GTYRAC	2 cut(s)	511, 616
HindIII	AAGCTT	1 cut(s)	878
HinfI	GANTC	7 cut(s)	121, 143, 332, 781, 1067, 1081, 1205
HphI	GGTGA	2 cut(s)	419, 532
Hpy166II	GTNNAC	4 cut(s)	511, 616, 1139, 1267
Hpy188I	TCNGA	7 cut(s)	12, 120, 148, 172, 561, 623, 801
Hpy188III	TCNNGA	6 cut(s)	212, 254, 1061, 1085, 1151, 1229
Hpy8I	GTNNAC	4 cut(s)	511, 616, 1139, 1267
HpyAV	CCTTC	7 cut(s)	406, 796, 894, 1180, 1216, 1226, 1286
HpyCH4III	ACNGT	4 cut(s)	466, 499, 790, 901
HpyCH4IV	ACGT	2 cut(s)	152, 535
HpyCH4V	TGCA	8 cut(s)	157, 270, 278, 470, 517, 647, 679, 1244
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 476, 1141
HpyF3I	CTNAG	3 cut(s)	11, 306, 870
HpySE526I	ACGT	2 cut(s)	152, 535
Hsp92II	CATG	7 cut(s)	82, 614, 748, 766, 1105, 1277, 1319
Kzo9I	GATC	6 cut(s)	66, 174, 205, 694, 748, 844
LmnI	GCTCC	4 cut(s)	638, 682, 839, 1231
Lsp1109I	GCAGC	1 cut(s)	482
LweI	GCATC	5 cut(s)	121, 153, 634, 1105, 1176
MaeI	CTAG	1 cut(s)	731
MaeII	ACGT	2 cut(s)	152, 535
MaeIII	GTNAC	2 cut(s)	400, 736
MalI	GATC	6 cut(s)	68, 176, 207, 696, 750, 846
MboI	GATC	6 cut(s)	66, 174, 205, 694, 748, 844
MboII	GAAGA	4 cut(s)	1205, 1214, 1295, 1359
MfeI	CAATTG	1 cut(s)	54
MflI	RGATCY	3 cut(s)	174, 748, 844
MhlI	GDGCHC	1 cut(s)	365
MluCI	AATT	9 cut(s)	42, 54, 227, 264, 312, 416, 420, 938, 980
MlyI	GAGTC	3 cut(s)	326, 1075, 1076
MmeI	TCCRAC	1 cut(s)	584
MnlI	CCTC	9 cut(s)	126, 561, 759, 830, 865, 928, 1171, 1207, 1333
MseI	TTAA	7 cut(s)	108, 189, 222, 419, 690, 830, 1363
MslI	CAYNNNNRTG	1 cut(s)	1272
MspR9I	CCNGG	1 cut(s)	660
MunI	CAATTG	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	660
MvnI	CGCG	1 cut(s)	1135
MwoI	GCNNNNNNNGC	3 cut(s)	163, 476, 1141
NdeII	GATC	6 cut(s)	66, 174, 205, 694, 748, 844
NlaIII	CATG	7 cut(s)	82, 614, 748, 766, 1105, 1277, 1319
NlaIV	GGNNCC	5 cut(s)	364, 558, 750, 1107, 1227
NmuCI	GTSAC	1 cut(s)	400
NspI	RCATGY	3 cut(s)	82, 614, 1319
PceI	AGGCCT	1 cut(s)	663
PciI	ACATGT	3 cut(s)	78, 610, 1315
PfeI	GAWTC	4 cut(s)	121, 143, 781, 1205
PkrI	GCNGC	1 cut(s)	472
PleI	GAGTC	3 cut(s)	326, 1075, 1075
PpsI	GAGTC	3 cut(s)	326, 1075, 1075
Ppu21I	YACGTR	1 cut(s)	536
PscI	ACATGT	3 cut(s)	78, 610, 1315
PshBI	ATTAAT	1 cut(s)	419
Psp1406I	AACGTT	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	658
PspN4I	GGNNCC	5 cut(s)	364, 558, 750, 1107, 1227
PspPI	GGNCC	2 cut(s)	720, 1105
PsrI	GAACNNNNNNTAC	3 cut(s)	30, 65, 97
PsuI	RGATCY	3 cut(s)	174, 748, 844
RsaI	GTAC	4 cut(s)	351, 713, 1218, 1266
RsaNI	GTAC	4 cut(s)	350, 712, 1217, 1265
RseI	CAYNNNNRTG	1 cut(s)	1272
SaqAI	TTAA	7 cut(s)	108, 189, 222, 419, 690, 830, 1363
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	6 cut(s)	66, 174, 205, 694, 748, 844
Sau96I	GGNCC	2 cut(s)	720, 1105
ScaI	AGTACT	1 cut(s)	351
SchI	GAGTC	3 cut(s)	326, 1075, 1076
ScrFI	CCNGG	1 cut(s)	660
SduI	GDGCHC	1 cut(s)	365
SfaNI	GCATC	5 cut(s)	121, 153, 634, 1105, 1176
SinI	GGWCC	1 cut(s)	1105
SmiMI	CAYNNNNRTG	1 cut(s)	1272
SmlI	CTYRAG	3 cut(s)	860, 969, 1045
SmoI	CTYRAG	3 cut(s)	860, 969, 1045
Sse9I	AATT	9 cut(s)	42, 54, 227, 264, 312, 416, 420, 938, 980
SseBI	AGGCCT	1 cut(s)	663
SspMI	CTAG	1 cut(s)	731
StuI	AGGCCT	1 cut(s)	663
StyD4I	CCNGG	1 cut(s)	658
StyI	CCWWGG	2 cut(s)	634, 1353
TaaI	ACNGT	4 cut(s)	466, 499, 790, 901
TaiI	ACGT	2 cut(s)	155, 538
TaqI	TCGA	1 cut(s)	330
TasI	AATT	9 cut(s)	42, 54, 227, 264, 312, 416, 420, 938, 980
TatI	WGTACW	2 cut(s)	349, 1264
TfiI	GAWTC	4 cut(s)	121, 143, 781, 1205
Tru1I	TTAA	7 cut(s)	108, 189, 222, 419, 690, 830, 1363
Tru9I	TTAA	7 cut(s)	108, 189, 222, 419, 690, 830, 1363
TscAI	CASTG	3 cut(s)	409, 793, 906
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	4 cut(s)	73, 404, 932, 1290
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	3 cut(s)	409, 793, 906
VpaK11BI	GGWCC	1 cut(s)	1105
VspI	ATTAAT	1 cut(s)	419
XapI	RAATTY	4 cut(s)	227, 312, 938, 980
XceI	RCATGY	3 cut(s)	82, 614, 1319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XspI	CTAG	1 cut(s)	731
ZrmI	AGTACT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.