Rorug06G0319600

Synaptotagmin-like mitochondrial-lipid-binding domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
47136707 .. 47138021
1315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0319600.1

Sequence Viewer

Length: 987 bp
ATGTGGTCCATCGGATATCCTCGATATGCAAGGAAAGATTTATTCGATAAAGTGGGATTGGTGAAAGGCAATTATCGACCCACGTACATAGTGGAGAAATATGTGTATGGAGCACCAAAACTGCGATGTCGCCCATCCTACCTGTTGGCTTACGTTGCGGTGTCAGACAATGAAGGAACTAAAGCCTTGGGGAGGAGGGACATTCTGATTGCCTGGAGAGGAACCAAGTTGGAGGCTGAAGTTGCTGTCGACAAAAACACCGAACTACGCCCGGCTCCTAAAATTTTTGGAAACCAGTATGCCGGCGCTATGGTGCACGGTGGTTGGTATGATTATTACATTAATACTGACGTTAGGACCCCCAAGAACCAACGAACTAGTTGCCAAGATCAGGTTGGAGAGGCCGTTAGAAAACTGATAGATCAATACGGTAACGAGGGTCAACAACTCAGCATTACTATAACTGGCCGCGGCACTGGTGCTGCATTTGCAATTTTAAATGGGATGGATATTGTTTGCAACAAACTCAATTATCCTACAAAACAACCCAAGAGCCCATGTCTGGTCACGGCGATTGTCTTTGGCTGTCCCTTTGTTGGAAACGAAGCCTTTAAGAATGCGGAGAACGATGAGACCATGTTTCAGATCTTGCGGGTCACAAATGAACCAGATCCAGTGACTAATTCGGAGCCTTCTCCGGAATATGAACATATTGGAGTAGAGGTGAAAATTAACACAGTCAATTCGCCCTACTTGAAGAATCCAATAGATACCGTACATGAGTTGGAGGTTTACTTGCATGGGGTTGCAGCGCACCCAGGGACAACTGTGGCATTGGAAGATATCCGCCGTACAGTGATGGTGAACAAAACATTGGACGGTCTTAAGGATGAAACTATAGTCCCCCCCATCTGGATTTTAAATAAGTTCATGGTTCAAAATGAGAGAGGCGCCTGGGAGCTGAAGGATGTTCCCGTTGATGATTAG

Protein Analysis

328

Amino Acids

36.79

Weight (kDa)

6.26

Isoelectric Point (pI)

25.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 70 - 229 1.4e-21 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 950
AccI GTMKAC 1 cut(s) 249
AccII CGCG 1 cut(s) 471
AccIII TCCGGA 1 cut(s) 697
AciI CCGC 6 cut(s) 158, 469, 471, 620, 652, 847
AclWI GGATC 1 cut(s) 665
AcoI YGGCCR 1 cut(s) 466
AcsI RAATTY 1 cut(s) 282
AcuI CTGAAG 2 cut(s) 258, 983
AcyI GRCGYC 1 cut(s) 951
AfaI GTAC 3 cut(s) 86, 777, 853
AfiI CCNNNNNNNGG 5 cut(s) 192, 391, 562, 596, 912
AflII CTTAAG 1 cut(s) 884
AgsI TTSAA 2 cut(s) 757, 938
AhlI ACTAGT 1 cut(s) 377
AjnI CCWGG 3 cut(s) 212, 817, 953
AjuI GAANNNNNNNTTGG 2 cut(s) 857, 889
AluBI AGCT 1 cut(s) 961
AluI AGCT 1 cut(s) 961
Alw21I GWGCWC 2 cut(s) 115, 318
Alw26I GTCTC 1 cut(s) 626
Alw44I GTGCAC 1 cut(s) 314
AlwI GGATC 1 cut(s) 665
Aor13HI TCCGGA 1 cut(s) 697
AoxI GGCC 2 cut(s) 402, 466
ApaLI GTGCAC 1 cut(s) 314
ApeKI GCWGC 2 cut(s) 482, 809
ApoI RAATTY 1 cut(s) 282
AseI ATTAAT 1 cut(s) 342
AspLEI GCGC 3 cut(s) 308, 814, 953
AspS9I GGNCC 2 cut(s) 6, 357
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 3 cut(s) 73, 736, 874
AvaII GGWCC 2 cut(s) 6, 357
BaeGI GKGCMC 1 cut(s) 318
BanI GGYRCC 1 cut(s) 950
BanII GRGCYC 1 cut(s) 557
Bbv12I GWGCWC 2 cut(s) 115, 318
BbvI GCAGC 2 cut(s) 469, 821
BccI CCATC 5 cut(s) 17, 142, 499, 853, 917
BceAI ACGGC 3 cut(s) 389, 585, 834
BcgI CGANNNNNNTGC 2 cut(s) 363, 397
BciT130I CCWGG 3 cut(s) 214, 819, 955
BcnI CCSGG 1 cut(s) 272
BcoDI GTCTC 1 cut(s) 626
BcuI ACTAGT 1 cut(s) 377
BfaI CTAG 1 cut(s) 378
BfmI CTRYAG 1 cut(s) 897
BfoI RGCGCY 2 cut(s) 309, 954
BfrI CTTAAG 1 cut(s) 884
BglII AGATCT 1 cut(s) 645
BisI GCNGC 4 cut(s) 469, 472, 483, 810
BlsI GCNGC 4 cut(s) 470, 473, 484, 811
Bme1390I CCNGG 4 cut(s) 214, 272, 819, 955
Bme18I GGWCC 2 cut(s) 6, 357
BmgT120I GGNCC 2 cut(s) 6, 357
BmiI GGNNCC 5 cut(s) 223, 276, 359, 690, 952
BmrFI CCNGG 4 cut(s) 214, 272, 819, 955
BpmI CTGGAG 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 272
BsaAI YACGTR 1 cut(s) 84
BsaHI GRCGYC 1 cut(s) 951
BsaI GGTCTC 1 cut(s) 626
BsaJI CCNNGG 5 cut(s) 186, 469, 817, 818, 954
BsaWI WCCGGW 1 cut(s) 697
BsaXI ACNNNNNCTCC 4 cut(s) 390, 420, 708, 738
Bsc4I CCNNNNNNNGG 5 cut(s) 192, 391, 562, 596, 912
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 4 cut(s) 295, 469, 481, 674
BseAI TCCGGA 1 cut(s) 697
BseBI CCWGG 3 cut(s) 214, 819, 955
BseDI CCNNGG 5 cut(s) 186, 469, 817, 818, 954
BseGI GGATG 4 cut(s) 134, 510, 895, 973
BseLI CCNNNNNNNGG 5 cut(s) 192, 391, 562, 596, 912
BseMII CTCAG 1 cut(s) 463
BseNI ACTGG 4 cut(s) 295, 469, 481, 674
BseRI GAGGAG 1 cut(s) 208
BseSI GKGCMC 1 cut(s) 318
BseXI GCAGC 2 cut(s) 469, 821
Bsh1236I CGCG 1 cut(s) 471
BshFI GGCC 2 cut(s) 404, 468
BshNI GGYRCC 1 cut(s) 950
BsiHKAI GWGCWC 2 cut(s) 115, 318
BsiSI CCGG 3 cut(s) 272, 303, 698
BslFI GGGAC 4 cut(s) 212, 573, 835, 887
BslI CCNNNNNNNGG 5 cut(s) 192, 391, 562, 596, 912
BsmAI GTCTC 1 cut(s) 626
BsmFI GGGAC 4 cut(s) 212, 573, 835, 887
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 2 cut(s) 404, 468
Bso31I GGTCTC 1 cut(s) 626
Bsp1286I GDGCHC 3 cut(s) 115, 318, 557
Bsp13I TCCGGA 1 cut(s) 697
Bsp143I GATC 4 cut(s) 388, 421, 645, 670
BspACI CCGC 6 cut(s) 158, 469, 471, 620, 652, 847
BspANI GGCC 2 cut(s) 404, 468
BspCNI CTCAG 1 cut(s) 462
BspEI TCCGGA 1 cut(s) 697
BspFNI CGCG 1 cut(s) 471
BspLI GGNNCC 5 cut(s) 223, 276, 359, 690, 952
BspPI GGATC 1 cut(s) 665
BspT107I GGYRCC 1 cut(s) 950
BspTI CTTAAG 1 cut(s) 884
BspTNI GGTCTC 1 cut(s) 626
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 4 cut(s) 295, 469, 481, 674
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 5 cut(s) 186, 469, 817, 818, 954
BssMI GATC 4 cut(s) 388, 421, 645, 670
BssNI GRCGYC 1 cut(s) 951
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 3 cut(s) 214, 819, 955
Bst4CI ACNGT 7 cut(s) 320, 431, 739, 775, 829, 856, 881
BstACI GRCGYC 1 cut(s) 951
BstAFI CTTAAG 1 cut(s) 884
BstBAI YACGTR 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 1 cut(s) 449
BstDSI CCRYGG 1 cut(s) 469
BstENI CCTNNNNNAGG 1 cut(s) 190
BstF5I GGATG 4 cut(s) 134, 510, 895, 973
BstFNI CGCG 1 cut(s) 471
BstH2I RGCGCY 2 cut(s) 309, 954
BstHHI GCGC 3 cut(s) 308, 814, 953
BstKTI GATC 4 cut(s) 391, 424, 648, 673
BstMAI GTCTC 1 cut(s) 626
BstMBI GATC 4 cut(s) 388, 421, 645, 670
BstMWI GCNNNNNNNGC 3 cut(s) 155, 242, 488
BstNI CCWGG 3 cut(s) 214, 819, 955
BstSCI CCNGG 4 cut(s) 212, 270, 817, 953
BstSFI CTRYAG 1 cut(s) 897
BstSLI GKGCMC 1 cut(s) 318
BstUI CGCG 1 cut(s) 471
BstV1I GCAGC 2 cut(s) 469, 821
BstX2I RGATCY 2 cut(s) 645, 670
BstYI RGATCY 2 cut(s) 645, 670
BsuRI GGCC 2 cut(s) 404, 468
BtgI CCRYGG 1 cut(s) 469
BtgZI GCGATG 1 cut(s) 139
BtsCI GGATG 4 cut(s) 134, 510, 895, 973
BtsIMutI CAGTG 3 cut(s) 474, 681, 861
Cac8I GCNNGC 1 cut(s) 304
CfoI GCGC 3 cut(s) 308, 814, 953
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 2 cut(s) 6, 357
Cfr42I CCGCGG 1 cut(s) 472
Csp6I GTAC 3 cut(s) 85, 776, 852
CviAII CATG 5 cut(s) 558, 637, 779, 800, 931
CviQI GTAC 3 cut(s) 85, 776, 852
DdeI CTNAG 1 cut(s) 449
DinI GGCGCC 1 cut(s) 952
DpnI GATC 4 cut(s) 390, 423, 647, 672
DpnII GATC 4 cut(s) 388, 421, 645, 670
DraI TTTAAA 2 cut(s) 498, 921
EaeI YGGCCR 1 cut(s) 466
EciI GGCGGA 1 cut(s) 836
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 557
Eco31I GGTCTC 1 cut(s) 626
Eco32I GATATC 2 cut(s) 17, 844
Eco47I GGWCC 2 cut(s) 6, 357
Eco57I CTGAAG 2 cut(s) 258, 983
EcoNI CCTNNNNNAGG 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 357
EcoRII CCWGG 3 cut(s) 212, 817, 953
EcoRV GATATC 2 cut(s) 17, 844
EcoT14I CCWWGG 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 557
EgeI GGCGCC 1 cut(s) 952
EheI GGCGCC 1 cut(s) 952
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 5 cut(s) 561, 640, 782, 803, 934
FaqI GGGAC 4 cut(s) 212, 573, 835, 887
FatI CATG 5 cut(s) 557, 636, 778, 799, 930
FauI CCCGC 1 cut(s) 645
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 4 cut(s) 469, 472, 483, 810
FokI GGATG 4 cut(s) 121, 517, 902, 980
FriOI GRGCYC 1 cut(s) 557
Fsp4HI GCNGC 4 cut(s) 469, 472, 483, 810
FspBI CTAG 1 cut(s) 378
GlaI GCGC 3 cut(s) 307, 813, 952
GluI GCNGC 4 cut(s) 469, 472, 483, 810
GsuI CTGGAG 1 cut(s) 235
HaeII RGCGCY 2 cut(s) 309, 954
HaeIII GGCC 2 cut(s) 404, 468
HapII CCGG 3 cut(s) 272, 303, 698
HhaI GCGC 3 cut(s) 308, 814, 953
Hin1I GRCGYC 1 cut(s) 951
Hin1II CATG 5 cut(s) 561, 640, 782, 803, 934
Hin6I GCGC 3 cut(s) 306, 812, 951
HinP1I GCGC 3 cut(s) 306, 812, 951
HincII GTYRAC 2 cut(s) 250, 443
HindII GTYRAC 2 cut(s) 250, 443
HinfI GANTC 1 cut(s) 760
HpaII CCGG 3 cut(s) 272, 303, 698
HphI GGTGA 3 cut(s) 73, 736, 874
Hpy166II GTNNAC 5 cut(s) 250, 316, 443, 793, 865
Hpy188I TCNGA 5 cut(s) 14, 166, 207, 645, 688
Hpy188III TCNNGA 2 cut(s) 698, 913
Hpy8I GTNNAC 5 cut(s) 250, 316, 443, 793, 865
HpyAV CCTTC 3 cut(s) 167, 702, 958
HpyCH4III ACNGT 7 cut(s) 320, 431, 739, 775, 829, 856, 881
HpyCH4IV ACGT 3 cut(s) 83, 153, 351
HpyCH4V TGCA 7 cut(s) 29, 316, 485, 491, 519, 799, 809
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 242, 488
HpyF3I CTNAG 1 cut(s) 449
HpySE526I ACGT 3 cut(s) 83, 153, 351
Hsp92I GRCGYC 1 cut(s) 951
Hsp92II CATG 5 cut(s) 561, 640, 782, 803, 934
HspAI GCGC 3 cut(s) 306, 812, 951
KasI GGCGCC 1 cut(s) 950
Kpn2I TCCGGA 1 cut(s) 697
KroI GCCGGC 1 cut(s) 302
KroNI GCCGGC 1 cut(s) 304
KspI CCGCGG 1 cut(s) 472
Kzo9I GATC 4 cut(s) 388, 421, 645, 670
LmnI GCTCC 4 cut(s) 110, 280, 688, 958
Lsp1109I GCAGC 2 cut(s) 469, 821
MaeI CTAG 1 cut(s) 378
MaeII ACGT 3 cut(s) 83, 153, 351
MaeIII GTNAC 4 cut(s) 431, 565, 655, 676
MalI GATC 4 cut(s) 390, 423, 647, 672
MboI GATC 4 cut(s) 388, 421, 645, 670
MboII GAAGA 2 cut(s) 769, 851
MflI RGATCY 2 cut(s) 645, 670
MhlI GDGCHC 3 cut(s) 115, 318, 557
MluCI AATT 7 cut(s) 70, 282, 492, 529, 682, 729, 742
Mly113I GGCGCC 1 cut(s) 951
MmeI TCCRAC 4 cut(s) 210, 376, 577, 765
MroI TCCGGA 1 cut(s) 697
MroNI GCCGGC 1 cut(s) 302
MseI TTAA 6 cut(s) 342, 497, 612, 732, 885, 920
MspA1I CMGCKG 1 cut(s) 471
MspCI CTTAAG 1 cut(s) 884
MspI CCGG 3 cut(s) 272, 303, 698
MspR9I CCNGG 4 cut(s) 214, 272, 819, 955
Mva1269I GAATGC 1 cut(s) 622
MvaI CCWGG 3 cut(s) 214, 819, 955
MvnI CGCG 1 cut(s) 471
MwoI GCNNNNNNNGC 3 cut(s) 155, 242, 488
NaeI GCCGGC 1 cut(s) 304
NarI GGCGCC 1 cut(s) 951
NciI CCSGG 1 cut(s) 272
NdeII GATC 4 cut(s) 388, 421, 645, 670
NgoMIV GCCGGC 1 cut(s) 302
NlaIII CATG 5 cut(s) 561, 640, 782, 803, 934
NlaIV GGNNCC 5 cut(s) 223, 276, 359, 690, 952
NmuCI GTSAC 3 cut(s) 565, 655, 676
PasI CCCWGGG 1 cut(s) 818
PctI GAATGC 1 cut(s) 622
PdiI GCCGGC 1 cut(s) 304
PfeI GAWTC 1 cut(s) 760
PkrI GCNGC 4 cut(s) 470, 473, 484, 811
PluTI GGCGCC 1 cut(s) 954
Ppu21I YACGTR 1 cut(s) 84
PpuMI RGGWCCY 1 cut(s) 357
PshBI ATTAAT 1 cut(s) 342
Psp5II RGGWCCY 1 cut(s) 357
Psp6I CCWGG 3 cut(s) 212, 817, 953
PspGI CCWGG 3 cut(s) 212, 817, 953
PspN4I GGNNCC 5 cut(s) 223, 276, 359, 690, 952
PspPI GGNCC 2 cut(s) 6, 357
PspPPI RGGWCCY 1 cut(s) 357
PsuI RGATCY 2 cut(s) 645, 670
RsaI GTAC 3 cut(s) 86, 777, 853
RsaNI GTAC 3 cut(s) 85, 776, 852
SacII CCGCGG 1 cut(s) 472
SalI GTCGAC 1 cut(s) 248
SaqAI TTAA 6 cut(s) 342, 497, 612, 732, 885, 920
SatI GCNGC 4 cut(s) 469, 472, 483, 810
Sau3AI GATC 4 cut(s) 388, 421, 645, 670
Sau96I GGNCC 2 cut(s) 6, 357
ScrFI CCNGG 4 cut(s) 214, 272, 819, 955
SduI GDGCHC 3 cut(s) 115, 318, 557
SetI ASST 8 cut(s) 86, 144, 156, 354, 396, 726, 792, 963
SfcI CTRYAG 1 cut(s) 897
SfoI GGCGCC 1 cut(s) 952
Sfr303I CCGCGG 1 cut(s) 472
SgrBI CCGCGG 1 cut(s) 472
SinI GGWCC 2 cut(s) 6, 357
SmlI CTYRAG 1 cut(s) 884
SmoI CTYRAG 1 cut(s) 884
SpeI ACTAGT 1 cut(s) 377
Sse9I AATT 7 cut(s) 70, 282, 492, 529, 682, 729, 742
SsiI CCGC 6 cut(s) 158, 469, 471, 620, 652, 847
SspDI GGCGCC 1 cut(s) 950
SspMI CTAG 1 cut(s) 378
StyD4I CCNGG 4 cut(s) 212, 270, 817, 953
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 7 cut(s) 320, 431, 739, 775, 829, 856, 881
TaiI ACGT 3 cut(s) 86, 156, 354
TaqI TCGA 4 cut(s) 22, 45, 76, 249
TasI AATT 7 cut(s) 70, 282, 492, 529, 682, 729, 742
TauI GCSGC 2 cut(s) 471, 474
TfiI GAWTC 1 cut(s) 760
Tru1I TTAA 6 cut(s) 342, 497, 612, 732, 885, 920
Tru9I TTAA 6 cut(s) 342, 497, 612, 732, 885, 920
TscAI CASTG 3 cut(s) 481, 681, 861
TseFI GTSAC 3 cut(s) 565, 655, 676
TseI GCWGC 2 cut(s) 482, 809
Tsp45I GTSAC 3 cut(s) 565, 655, 676
TspDTI ATGAA 5 cut(s) 186, 678, 720, 906, 919
TspRI CASTG 3 cut(s) 481, 681, 861
Vha464I CTTAAG 1 cut(s) 884
VneI GTGCAC 1 cut(s) 314
VpaK11BI GGWCC 2 cut(s) 6, 357
VspI ATTAAT 1 cut(s) 342
XagI CCTNNNNNAGG 1 cut(s) 190
XapI RAATTY 1 cut(s) 282
XcmI CCANNNNNNNNNTGG 2 cut(s) 88, 392
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.