FvH4_2g38640

HBS1-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
27900196 .. 27901491
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38640.t1

Sequence Viewer

Length: 1296 bp
ATGGCTCAACTCAATCTAGCCATAGTTGGACATGTCGACTCAGGCAAATCGACTCTCTCTGGTAGACTGCTTCATCTATTGGGACGGATATCCAAAAAGGAAATGCACAAAAATGAGAAAGAGGCAAAGTCACAGGGGAAGGGGTCCTTTGCCTATGCTAGGGCGCTGGACGAGAGCACAGAAGAAAGAGAAAGAGGTATAACTATGAGTGTTGCTGTTGCATATTTTGACTCCAAAAACTACAAGGTTGTTATGCTGGACTCCCCTGGGCATAAAGACTTTGTTCCGAACATGATCTCCGGCGCAACACAAGCTGATGCTGCAATACTTGTTGTTGATGGTTCGAATGGTGCATTTGAAGCTGGTATGAAGGGAGGACAGACTAAGGAGCATGCACAGATCATCAAAAGCTTCGGTGTTAAGCAGATTATAGTTGCTGTAAATAAGATGGATGTTGTTGGTTACTCAAAGGATAGATTTGATGAAATAAAACACACACTAGGAACATTTCTCTTGCGTTCCTGTCGTTTTGAGGAGTCCTCGGTGTGTTGGGTTCCATTGAGTGCCATGGATAATCAGAACTTGGTGTCAGCTCCTTGTGATGAACGTTTGTTGTCTTGGTATAGCGGACCTTGCTTGTTGGATGCCATTGATTCATTTCAACCTCCTACGAGAGAGTCTGAGAAGTCACTGCTCATGCCTATATGTGATGTCATTAAATCGTCTAGAGGGCAGGTTTCTGCTTGTGGTAAACTGCAGGCTGGAACTCTTCAAAATGGACTTAAGGTTCGTGTTATGCCTTCTGGAGAATTGGGAACTGTCCGGTCTTTAGAACGTGATGGCTCTCAGTCATGTTCGACTGCTACAGCTGGTGATAATGTGGCTGTTACTCTACAAGGGATTGATGTTCATCATGTGAGGGCAGGAGGTGTGCTCTGTGACCCTGATGTTCCAGTTGCATTTGCGAGACATTTGGAATTGAATGTGCAACTTTTGGACGGGGCACAGCCTATGTTGGCTGGCTCTCAGCTGGAGTTTCACATACATCATGCAAAGGAGGCAGCAAGAGTCGTGAAAATAGCAGGATTACTTGATCCGAAGACTCTTAAAGTGGCGAAAAGGTCTCCTCGATGTCTTCTTGCAAAGCAGGTAGCTGTTGTAGAAGTACTACTGCAAGGGCCAGTTTGTGTGGCAGAGTACTCTAAATGTAGATCTCTAGGGAGTGTATCTTTGAGAGCATTAGGGAATACTGTGGCCCTCGGCAAGGTAACGCGAGTAATCGAGGAGCAGAAGTAG

Protein Analysis

432

Amino Acids

46.42

Weight (kDa)

8.66

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 4 - 221 1.7e-49 Elongation factor Tu GTP binding domain
GTP_EFTU_D2 PF03144 250 - 313 1.6e-06 Elongation factor Tu domain 2
GTP-eEF1A_C PF22594 325 - 424 6.5e-24 GTP-eEF1A C-terminal domain-like
GTP_EFTU_D3 PF03143 336 - 426 9.9e-07 Elongation factor Tu C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 724, 1138
AccI GTMKAC 2 cut(s) 36, 64
AccII CGCG 1 cut(s) 1273
AciI CCGC 1 cut(s) 627
AclI AACGTT 1 cut(s) 607
AclWI GGATC 1 cut(s) 1088
AfaI GTAC 2 cut(s) 1167, 1199
AfiI CCNNNNNNNGG 2 cut(s) 159, 1264
AflII CTTAAG 1 cut(s) 782
AflIII ACRYGT 1 cut(s) 31
AgsI TTSAA 4 cut(s) 359, 662, 773, 982
AjnI CCWGG 1 cut(s) 265
AloI GAACNNNNNNTCC 4 cut(s) 281, 313, 771, 803
AluBI AGCT 7 cut(s) 314, 362, 411, 593, 869, 1030, 1154
AluI AGCT 7 cut(s) 314, 362, 411, 593, 869, 1030, 1154
Alw21I GWGCWC 2 cut(s) 179, 936
Alw26I GTCTC 2 cut(s) 961, 1128
AlwI GGATC 1 cut(s) 1088
AoxI GGCC 2 cut(s) 1178, 1254
ApeKI GCWGC 2 cut(s) 320, 1061
ArsI GACNNNNNNTTYG 2 cut(s) 771, 803
AspLEI GCGC 2 cut(s) 166, 305
AspS9I GGNCC 4 cut(s) 144, 629, 1178, 1255
AsuHPI GGTGA 1 cut(s) 884
AsuII TTCGAA 1 cut(s) 344
AvaII GGWCC 2 cut(s) 144, 629
BaeGI GKGCMC 1 cut(s) 1006
BbsI GAAGAC 2 cut(s) 1106, 1127
Bbv12I GWGCWC 2 cut(s) 179, 936
BbvI GCAGC 2 cut(s) 307, 1073
BccI CCATC 3 cut(s) 332, 442, 833
BciT130I CCWGG 1 cut(s) 267
BcoDI GTCTC 2 cut(s) 961, 1128
BfaI CTAG 5 cut(s) 17, 159, 500, 726, 1217
BfmI CTRYAG 2 cut(s) 755, 864
BfoI RGCGCY 1 cut(s) 167
BfrI CTTAAG 1 cut(s) 782
BfuAI ACCTGC 2 cut(s) 724, 1138
BglII AGATCT 1 cut(s) 1211
BisI GCNGC 2 cut(s) 321, 1062
BlsI GCNGC 2 cut(s) 322, 1063
BmcAI AGTACT 2 cut(s) 1167, 1199
Bme1390I CCNGG 1 cut(s) 267
Bme18I GGWCC 2 cut(s) 144, 629
BmgT120I GGNCC 4 cut(s) 144, 629, 1178, 1255
BmiI GGNNCC 2 cut(s) 145, 555
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 2 cut(s) 307, 634
BpiI GAAGAC 2 cut(s) 1106, 1127
BplI GAGNNNNNCTC 4 cut(s) 524, 556, 918, 950
BpmI CTGGAG 2 cut(s) 825, 1052
Bpu14I TTCGAA 1 cut(s) 344
BsaBI GATNNNNATC 1 cut(s) 909
BsaI GGTCTC 1 cut(s) 1128
BsaJI CCNNGG 5 cut(s) 265, 266, 540, 567, 1258
BsaWI WCCGGW 1 cut(s) 822
BsaXI ACNNNNNCTCC 3 cut(s) 281, 311, 1277
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 1264
Bse1I ACTGG 2 cut(s) 953, 1181
Bse8I GATNNNNATC 1 cut(s) 909
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 5 cut(s) 265, 266, 540, 567, 1258
BseGI GGATG 2 cut(s) 457, 649
BseJI GATNNNNATC 1 cut(s) 909
BseLI CCNNNNNNNGG 2 cut(s) 159, 1264
BseMII CTCAG 4 cut(s) 54, 672, 860, 1040
BseNI ACTGG 2 cut(s) 953, 1181
BseRI GAGGAG 2 cut(s) 548, 1116
BseSI GKGCMC 1 cut(s) 1006
BseXI GCAGC 2 cut(s) 307, 1073
Bsh1236I CGCG 1 cut(s) 1273
BshFI GGCC 2 cut(s) 1180, 1256
BsiHKAI GWGCWC 2 cut(s) 179, 936
BsiSI CCGG 2 cut(s) 300, 823
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 159, 1264
BsmAI GTCTC 2 cut(s) 961, 1128
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 2 cut(s) 1180, 1256
Bso31I GGTCTC 1 cut(s) 1128
Bsp119I TTCGAA 1 cut(s) 344
Bsp1286I GDGCHC 3 cut(s) 179, 936, 1006
Bsp143I GATC 4 cut(s) 294, 399, 1093, 1211
Bsp19I CCATGG 1 cut(s) 567
BspACI CCGC 1 cut(s) 627
BspANI GGCC 2 cut(s) 1180, 1256
BspCNI CTCAG 4 cut(s) 53, 673, 859, 1039
BspFNI CGCG 1 cut(s) 1273
BspLI GGNNCC 2 cut(s) 145, 555
BspMAI CTGCAG 1 cut(s) 759
BspMI ACCTGC 2 cut(s) 724, 1138
BspPI GGATC 1 cut(s) 1088
BspT104I TTCGAA 1 cut(s) 344
BspTI CTTAAG 1 cut(s) 782
BspTNI GGTCTC 1 cut(s) 1128
BsrI ACTGG 2 cut(s) 953, 1181
BssECI CCNNGG 5 cut(s) 265, 266, 540, 567, 1258
BssMI GATC 4 cut(s) 294, 399, 1093, 1211
BssT1I CCWWGG 1 cut(s) 567
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 2 cut(s) 820, 1252
Bst6I CTCTTC 1 cut(s) 774
BstAFI CTTAAG 1 cut(s) 782
BstBI TTCGAA 1 cut(s) 344
BstC8I GCNNGC 3 cut(s) 393, 759, 1021
BstDEI CTNAG 5 cut(s) 40, 384, 681, 846, 1026
BstDSI CCRYGG 1 cut(s) 567
BstENI CCTNNNNNAGG 2 cut(s) 157, 1262
BstF5I GGATG 2 cut(s) 457, 649
BstFNI CGCG 1 cut(s) 1273
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 2 cut(s) 166, 305
BstKTI GATC 4 cut(s) 297, 402, 1096, 1214
BstMAI GTCTC 2 cut(s) 961, 1128
BstMBI GATC 4 cut(s) 294, 399, 1093, 1211
BstMWI GCNNNNNNNGC 5 cut(s) 311, 320, 359, 633, 1058
BstNI CCWGG 1 cut(s) 267
BstNSI RCATGY 2 cut(s) 35, 395
BstSCI CCNGG 1 cut(s) 265
BstSFI CTRYAG 2 cut(s) 755, 864
BstSLI GKGCMC 1 cut(s) 1006
BstUI CGCG 1 cut(s) 1273
BstV1I GCAGC 2 cut(s) 307, 1073
BstV2I GAAGAC 2 cut(s) 1106, 1127
BstX2I RGATCY 1 cut(s) 1211
BstYI RGATCY 1 cut(s) 1211
BsuRI GGCC 2 cut(s) 1180, 1256
BtgI CCRYGG 1 cut(s) 567
BtsCI GGATG 2 cut(s) 457, 649
BtsI GCAGTG 1 cut(s) 689
BtsIMutI CAGTG 1 cut(s) 689
BveI ACCTGC 2 cut(s) 724, 1138
Cac8I GCNNGC 3 cut(s) 393, 759, 1021
CfoI GCGC 2 cut(s) 166, 305
Cfr13I GGNCC 4 cut(s) 144, 629, 1178, 1255
Csp6I GTAC 2 cut(s) 1166, 1198
CviAII CATG 8 cut(s) 32, 292, 392, 568, 697, 852, 914, 1049
CviQI GTAC 2 cut(s) 1166, 1198
DdeI CTNAG 5 cut(s) 40, 384, 681, 846, 1026
DpnI GATC 4 cut(s) 296, 401, 1095, 1213
DpnII GATC 4 cut(s) 294, 399, 1093, 1211
Eam1104I CTCTTC 1 cut(s) 774
EarI CTCTTC 1 cut(s) 774
Eco130I CCWWGG 1 cut(s) 567
Eco31I GGTCTC 1 cut(s) 1128
Eco32I GATATC 1 cut(s) 90
Eco47I GGWCC 2 cut(s) 144, 629
EcoNI CCTNNNNNAGG 2 cut(s) 157, 1262
EcoO109I RGGNCCY 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 265
EcoRV GATATC 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 567
ErhI CCWWGG 1 cut(s) 567
FaeI CATG 8 cut(s) 35, 295, 395, 571, 700, 855, 917, 1052
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 1 cut(s) 96
FatI CATG 8 cut(s) 31, 291, 391, 567, 696, 851, 913, 1048
FblI GTMKAC 2 cut(s) 36, 64
Fnu4HI GCNGC 2 cut(s) 321, 1062
FokI GGATG 2 cut(s) 464, 656
Fsp4HI GCNGC 2 cut(s) 321, 1062
FspBI CTAG 5 cut(s) 17, 159, 500, 726, 1217
GlaI GCGC 2 cut(s) 165, 304
GluI GCNGC 2 cut(s) 321, 1062
GsuI CTGGAG 2 cut(s) 825, 1052
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 2 cut(s) 1180, 1256
HapII CCGG 2 cut(s) 300, 823
HhaI GCGC 2 cut(s) 166, 305
Hin1II CATG 8 cut(s) 35, 295, 395, 571, 700, 855, 917, 1052
Hin6I GCGC 2 cut(s) 164, 303
HinP1I GCGC 2 cut(s) 164, 303
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 9 cut(s) 38, 52, 230, 260, 536, 653, 677, 1068, 1102
HpaII CCGG 2 cut(s) 300, 823
HphI GGTGA 1 cut(s) 884
Hpy166II GTNNAC 3 cut(s) 37, 65, 752
Hpy188I TCNGA 4 cut(s) 288, 579, 682, 1098
Hpy188III TCNNGA 3 cut(s) 726, 804, 1072
Hpy8I GTNNAC 3 cut(s) 37, 65, 752
HpyAV CCTTC 3 cut(s) 133, 364, 810
HpyCH4III ACNGT 2 cut(s) 820, 1252
HpyCH4IV ACGT 2 cut(s) 607, 835
HpyF10VI GCNNNNNNNGC 5 cut(s) 311, 320, 359, 633, 1058
HpyF3I CTNAG 5 cut(s) 40, 384, 681, 846, 1026
HpySE526I ACGT 2 cut(s) 607, 835
Hsp92II CATG 8 cut(s) 35, 295, 395, 571, 700, 855, 917, 1052
HspAI GCGC 2 cut(s) 164, 303
Kzo9I GATC 4 cut(s) 294, 399, 1093, 1211
LmnI GCTCC 3 cut(s) 388, 598, 1285
Lsp1109I GCAGC 2 cut(s) 307, 1073
LweI GCATC 2 cut(s) 307, 634
MaeI CTAG 5 cut(s) 17, 159, 500, 726, 1217
MaeII ACGT 2 cut(s) 607, 835
MaeIII GTNAC 6 cut(s) 129, 461, 687, 886, 938, 1267
MalI GATC 4 cut(s) 296, 401, 1095, 1213
MboI GATC 4 cut(s) 294, 399, 1093, 1211
MboII GAAGA 4 cut(s) 194, 761, 1111, 1127
MflI RGATCY 1 cut(s) 1211
MhlI GDGCHC 3 cut(s) 179, 936, 1006
MluCI AATT 2 cut(s) 809, 977
MlyI GAGTC 8 cut(s) 32, 46, 224, 254, 545, 686, 1077, 1096
MmeI TCCRAC 2 cut(s) 7, 621
MseI TTAA 4 cut(s) 420, 717, 783, 1107
MslI CAYNNNNRTG 1 cut(s) 111
MspA1I CMGCKG 2 cut(s) 869, 1030
MspCI CTTAAG 1 cut(s) 782
MspI CCGG 2 cut(s) 300, 823
MspR9I CCNGG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 267
MvnI CGCG 1 cut(s) 1273
MwoI GCNNNNNNNGC 5 cut(s) 311, 320, 359, 633, 1058
NcoI CCATGG 1 cut(s) 567
NdeII GATC 4 cut(s) 294, 399, 1093, 1211
NlaIII CATG 8 cut(s) 35, 295, 395, 571, 700, 855, 917, 1052
NlaIV GGNNCC 2 cut(s) 145, 555
NmeAIII GCCGAG 1 cut(s) 1239
NmuCI GTSAC 3 cut(s) 129, 687, 938
NspI RCATGY 2 cut(s) 35, 395
NspV TTCGAA 1 cut(s) 344
PaeI GCATGC 1 cut(s) 395
PasI CCCWGGG 1 cut(s) 266
PciI ACATGT 1 cut(s) 31
PfeI GAWTC 1 cut(s) 653
PkrI GCNGC 2 cut(s) 322, 1063
PleI GAGTC 8 cut(s) 32, 46, 224, 254, 544, 685, 1076, 1096
PpsI GAGTC 8 cut(s) 32, 46, 224, 254, 544, 685, 1076, 1096
PpuMI RGGWCCY 1 cut(s) 144
PscI ACATGT 1 cut(s) 31
Psp1406I AACGTT 1 cut(s) 607
Psp5II RGGWCCY 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 2 cut(s) 145, 555
PspPI GGNCC 4 cut(s) 144, 629, 1178, 1255
PspPPI RGGWCCY 1 cut(s) 144
PstI CTGCAG 1 cut(s) 759
PsuI RGATCY 1 cut(s) 1211
PvuII CAGCTG 2 cut(s) 869, 1030
RsaI GTAC 2 cut(s) 1167, 1199
RsaNI GTAC 2 cut(s) 1166, 1198
RseI CAYNNNNRTG 1 cut(s) 111
SalI GTCGAC 1 cut(s) 35
SaqAI TTAA 4 cut(s) 420, 717, 783, 1107
SatI GCNGC 2 cut(s) 321, 1062
Sau3AI GATC 4 cut(s) 294, 399, 1093, 1211
Sau96I GGNCC 4 cut(s) 144, 629, 1178, 1255
ScaI AGTACT 2 cut(s) 1167, 1199
SchI GAGTC 8 cut(s) 32, 46, 224, 254, 545, 686, 1077, 1096
ScrFI CCNGG 1 cut(s) 267
SduI GDGCHC 3 cut(s) 179, 936, 1006
SfaNI GCATC 2 cut(s) 307, 634
SfcI CTRYAG 2 cut(s) 755, 864
SfuI TTCGAA 1 cut(s) 344
SinI GGWCC 2 cut(s) 144, 629
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 782
SmoI CTYRAG 1 cut(s) 782
SphI GCATGC 1 cut(s) 395
Sse9I AATT 2 cut(s) 809, 977
SsiI CCGC 1 cut(s) 627
SspMI CTAG 5 cut(s) 17, 159, 500, 726, 1217
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 1 cut(s) 567
TaaI ACNGT 2 cut(s) 820, 1252
TaiI ACGT 2 cut(s) 610, 838
TaqI TCGA 6 cut(s) 36, 50, 344, 857, 1129, 1281
TasI AATT 2 cut(s) 809, 977
TatI WGTACW 2 cut(s) 1165, 1197
TfiI GAWTC 1 cut(s) 653
Tru1I TTAA 4 cut(s) 420, 717, 783, 1107
Tru9I TTAA 4 cut(s) 420, 717, 783, 1107
TscAI CASTG 1 cut(s) 696
TseFI GTSAC 3 cut(s) 129, 687, 938
TseI GCWGC 2 cut(s) 320, 1061
Tsp45I GTSAC 3 cut(s) 129, 687, 938
TspDTI ATGAA 6 cut(s) 62, 383, 498, 618, 645, 899
TspGWI ACGGA 1 cut(s) 100
TspRI CASTG 1 cut(s) 696
Vha464I CTTAAG 1 cut(s) 782
VpaK11BI GGWCC 2 cut(s) 144, 629
XagI CCTNNNNNAGG 2 cut(s) 157, 1262
XbaI TCTAGA 1 cut(s) 725
XceI RCATGY 2 cut(s) 35, 395
XmiI GTMKAC 2 cut(s) 36, 64
XspI CTAG 5 cut(s) 17, 159, 500, 726, 1217
ZrmI AGTACT 2 cut(s) 1167, 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.