Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006463

Physical Location & Seq

Genomic Coordinates Forward (+)

11533406 .. 11534752

Gene Structure 1347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGAATAGGAAGGAGGACTGCTTTATCTCTCCACCAGGAAAAGAACCAACCATGAGTCATCAACTGAATCTGGCGATGGTTGGACATGTGGATTCGGGAAAATCCACAATTTCAGGTAGATTGCTTCATCTATTAGGACGAATATCCAAAAAAGAAATGCACAAAAATGAAAAAGAGGCGAAGTCACAGGGAAAGGGTTCTTTTGCCTATGCGTGGGCATTGGACGAGAGCGCAGAAGGAAGAGAAAGAGGAATAACTATGAGTGTGGCTGTTGCATATTTTGACTCCAAAAAGTACAAGGTTGTTGTTCTGGACTCTCCTGGCCATAGAGACTTTGTTCCGAACATGATCTCCGGTGCCACACAAGCCGATGCTGCAATACTTGTTGTTGATGGTTCGCATGGTGCATTTGAAGCTGGTATGAAGGGAGGACAGACTAAGGAGCATGCACAGATAATCAAAAGCTTTGGCGTTAAGCAGATTGTAGTTGCTGTTAACAAGATGGATGTTGTTGGCTACTCCAAGGAAAGATTTGATGAGATCAAACACACACTAGGAACATACCTCTCACGTTCCTGTCGTTTCGAGGAGTCTGCAGTGTGTTGGGTTCCATTGAGTGCCATGGAGAATCAGAACATGGTGTCAGCTCCTGGTAATGAACGTTTGTTGTCTTGGTATAGCGGACCTTGCTTGTTGGAGGCAATTGATTCCTTTCAACCTCCTAAGAGAGAGTCTGAGAAGTCACTGCTGATGCCTATATGTGATGTCATTAAATCTTCCAGAGGGCAGGTTTCTGCTTGTGGTAAATTGCAAGCTGGAACTCTTCAAAATGGACTTCAGGTTCGGGTCATGCCTTCTGGAGAATTACGGACTGTCCGGTCTTTGGAACGTGACGGTTCTCAGTCATGCTCAACTGCCACAGCTGGTGACAATTTGGCTGTAACTCTCCAAGGGATTACTGATCGTCAAGTGATGGCAGGAGGCGTGCTCTGTGGCCCTGATGTTCCGGTTGCATTTGCGAGACATTTGGAATTGAATGTGCAACTTTTGGACGGGGCACAGCCTTTGTTGGTTGACTCTCAGCTGGAGTTTCAGATACACCATGCGAAAGAGGCAGCAAAAGTCGTGAAAATAGCAGCATTACTTGATCCGAAGACTTTAAAAGTGGCAAAAAAAATCTCCTCGCTGTCTTCTGGCAAAGCAGGTAGCTGTTGTAGAGGTATTTCTGGAGAAGCCAGTTTGTGTGGTAGAGTACTCCAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000288 GO:0000291 GO:0000956 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019222 GO:0019439 GO:0019538 GO:0023052 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034641 GO:0034645 GO:0034655 GO:0035639 GO:0036094 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043603 GO:0043604 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 ko05134 map03015 map05134

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 GTP_EFTU_D3

Protein Analysis

422

Amino Acids

45.3

Weight (kDa)

8.76

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	22 - 239	1.8e-47	Elongation factor Tu GTP binding domain
GTP-eEF1A_C	PF22594	343 - 404	6.6e-06	GTP-eEF1A C-terminal domain-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10630 AT5G10630 AT5G10630 AT5G10630 AT5G10630
fragaria_vesca	FvH4_2g38640 FvH4_5g19710
malus_domestica	MD08G1131300.v1.1
prunus_persica	Prupe.1G461200_v2.0.a1 Prupe.1G461200_v2.0.a1 Prupe.1G461200_v2.0.a1 Prupe.1G461200_v2.0.a1 Prupe.1G461200_v2.0.a1
pyrus_communis	pycom08g11000
rosa_chinensis	RchiOBHm_Chr6g0302681
rosa_laevigata	RLG00000011148
rosa_multiflora	Rmu_co8422569.1_g000001 Rmu_sc0023908.1_g000003 Rmu_sc0043029.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165440
rosa_rugosa	Rorug06G0316100
rosa_samantha	Rh6AG429400 Rh6BG473100 Rh6CG441700 Rh6DG428500
rosa_wichuraiana	Rw6G037170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	877
Acc36I	ACCTGC	2 cut(s)	778, 1193
AccB1I	GGYRCC	1 cut(s)	356
AciI	CCGC	1 cut(s)	681
AclI	AACGTT	1 cut(s)	661
AclWI	GGATC	1 cut(s)	1142
AcoI	YGGCCR	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	821
AfaI	GTAC	2 cut(s)	296, 1254
AfiI	CCNNNNNNNGG	2 cut(s)	213, 883
AflIII	ACRYGT	1 cut(s)	85
AgsI	TTSAA	4 cut(s)	413, 716, 827, 1036
AjnI	CCWGG	3 cut(s)	34, 319, 649
AloI	GAACNNNNNNTCC	4 cut(s)	335, 367, 825, 857
AluBI	AGCT	7 cut(s)	416, 465, 647, 815, 923, 1084, 1209
AluI	AGCT	7 cut(s)	416, 465, 647, 815, 923, 1084, 1209
Alw21I	GWGCWC	1 cut(s)	990
Alw26I	GTCTC	2 cut(s)	324, 1015
AlwI	GGATC	1 cut(s)	1142
AlwNI	CAGNNNCTG	1 cut(s)	650
AoxI	GGCC	2 cut(s)	322, 994
ApeKI	GCWGC	3 cut(s)	374, 1115, 1136
ArsI	GACNNNNNNTTYG	2 cut(s)	825, 857
Asp700I	GAANNNNTTC	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	683, 995
AsuHPI	GGTGA	1 cut(s)	938
AvaII	GGWCC	1 cut(s)	683
BaeGI	GKGCMC	1 cut(s)	1060
BalI	TGGCCA	1 cut(s)	324
BanI	GGYRCC	1 cut(s)	356
BbsI	GAAGAC	2 cut(s)	1160, 1182
Bbv12I	GWGCWC	1 cut(s)	990
BbvI	GCAGC	3 cut(s)	361, 1127, 1148
BccI	CCATC	4 cut(s)	70, 386, 496, 967
BcgI	CGANNNNNNTGC	2 cut(s)	575, 609
BciT130I	CCWGG	3 cut(s)	36, 321, 651
BcoDI	GTCTC	2 cut(s)	324, 1015
BfaI	CTAG	1 cut(s)	554
BfmI	CTRYAG	1 cut(s)	594
BfuAI	ACCTGC	2 cut(s)	778, 1193
BisI	GCNGC	3 cut(s)	375, 1116, 1137
BlsI	GCNGC	3 cut(s)	376, 1117, 1138
BmcAI	AGTACT	1 cut(s)	1254
Bme1390I	CCNGG	3 cut(s)	36, 321, 651
Bme18I	GGWCC	1 cut(s)	683
BmgT120I	GGNCC	2 cut(s)	683, 995
BmiI	GGNNCC	2 cut(s)	358, 609
BmrFI	CCNGG	3 cut(s)	36, 321, 651
BmsI	GCATC	2 cut(s)	361, 741
BpiI	GAAGAC	2 cut(s)	1160, 1182
BplI	GAGNNNNNCTC	2 cut(s)	972, 1004
BpmI	CTGGAG	3 cut(s)	879, 1106, 1248
BsaJI	CCNNGG	3 cut(s)	522, 621, 949
BsaWI	WCCGGW	3 cut(s)	353, 876, 1006
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 883
Bse1I	ACTGG	1 cut(s)	1236
BseBI	CCWGG	3 cut(s)	36, 321, 651
BseDI	CCNNGG	3 cut(s)	522, 621, 949
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	2 cut(s)	213, 883
BseMII	CTCAG	3 cut(s)	726, 914, 1094
BseNI	ACTGG	1 cut(s)	1236
BseRI	GAGGAG	2 cut(s)	602, 1171
BseSI	GKGCMC	1 cut(s)	1060
BseXI	GCAGC	3 cut(s)	361, 1127, 1148
BshFI	GGCC	2 cut(s)	324, 996
BshNI	GGYRCC	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	990
BsiSI	CCGG	3 cut(s)	354, 877, 1007
BslI	CCNNNNNNNGG	2 cut(s)	213, 883
BsmAI	GTCTC	2 cut(s)	324, 1015
BsnI	GGCC	2 cut(s)	324, 996
Bsp1286I	GDGCHC	2 cut(s)	990, 1060
Bsp143I	GATC	4 cut(s)	348, 540, 961, 1147
Bsp19I	CCATGG	1 cut(s)	621
BspACI	CCGC	1 cut(s)	681
BspANI	GGCC	2 cut(s)	324, 996
BspCNI	CTCAG	3 cut(s)	727, 913, 1093
BspLI	GGNNCC	2 cut(s)	358, 609
BspMAI	CTGCAG	1 cut(s)	598
BspMI	ACCTGC	2 cut(s)	778, 1193
BspPI	GGATC	1 cut(s)	1142
BspT107I	GGYRCC	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	1236
BssECI	CCNNGG	3 cut(s)	522, 621, 949
BssMI	GATC	4 cut(s)	348, 540, 961, 1147
BssT1I	CCWWGG	3 cut(s)	522, 621, 949
Bst2UI	CCWGG	3 cut(s)	36, 321, 651
Bst4CI	ACNGT	2 cut(s)	874, 896
Bst6I	CTCTTC	2 cut(s)	235, 828
BstC8I	GCNNGC	3 cut(s)	447, 813, 986
BstDEI	CTNAG	5 cut(s)	438, 723, 735, 900, 1080
BstDSI	CCRYGG	1 cut(s)	621
BstF5I	GGATG	1 cut(s)	511
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	4 cut(s)	351, 543, 964, 1150
BstMAI	GTCTC	2 cut(s)	324, 1015
BstMBI	GATC	4 cut(s)	348, 540, 961, 1147
BstMWI	GCNNNNNNNGC	5 cut(s)	365, 374, 413, 687, 1112
BstNI	CCWGG	3 cut(s)	36, 321, 651
BstNSI	RCATGY	2 cut(s)	89, 449
BstSCI	CCNGG	3 cut(s)	34, 319, 649
BstSFI	CTRYAG	1 cut(s)	594
BstSLI	GKGCMC	1 cut(s)	1060
BstV1I	GCAGC	3 cut(s)	361, 1127, 1148
BstV2I	GAAGAC	2 cut(s)	1160, 1182
BsuRI	GGCC	2 cut(s)	324, 996
BtgI	CCRYGG	1 cut(s)	621
BtgZI	GCGATG	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	511
BtsI	GCAGTG	2 cut(s)	603, 743
BtsIMutI	CAGTG	2 cut(s)	603, 743
BveI	ACCTGC	2 cut(s)	778, 1193
Cac8I	GCNNGC	3 cut(s)	447, 813, 986
CaiI	CAGNNNCTG	1 cut(s)	650
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	2 cut(s)	683, 995
Csp6I	GTAC	2 cut(s)	295, 1253
CviQI	GTAC	2 cut(s)	295, 1253
DdeI	CTNAG	5 cut(s)	438, 723, 735, 900, 1080
DpnI	GATC	4 cut(s)	350, 542, 963, 1149
DpnII	GATC	4 cut(s)	348, 540, 961, 1147
DraI	TTTAAA	1 cut(s)	1161
DrdI	GACNNNNNNGTC	1 cut(s)	877
DseDI	GACNNNNNNGTC	1 cut(s)	877
EaeI	YGGCCR	1 cut(s)	322
Eam1104I	CTCTTC	2 cut(s)	235, 828
EarI	CTCTTC	2 cut(s)	235, 828
Eco130I	CCWWGG	3 cut(s)	522, 621, 949
Eco47I	GGWCC	1 cut(s)	683
Eco57I	CTGAAG	1 cut(s)	821
EcoRII	CCWGG	3 cut(s)	34, 319, 649
EcoT14I	CCWWGG	3 cut(s)	522, 621, 949
ErhI	CCWWGG	3 cut(s)	522, 621, 949
Fnu4HI	GCNGC	3 cut(s)	375, 1116, 1137
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	3 cut(s)	375, 1116, 1137
FspBI	CTAG	1 cut(s)	554
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	3 cut(s)	375, 1116, 1137
GsuI	CTGGAG	3 cut(s)	879, 1106, 1248
HaeIII	GGCC	2 cut(s)	324, 996
HapII	CCGG	3 cut(s)	354, 877, 1007
HhaI	GCGC	1 cut(s)	233
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HincII	GTYRAC	2 cut(s)	496, 1075
HindII	GTYRAC	2 cut(s)	496, 1075
HindIII	AAGCTT	1 cut(s)	463
HpaI	GTTAAC	1 cut(s)	496
HpaII	CCGG	3 cut(s)	354, 877, 1007
HphI	GGTGA	1 cut(s)	938
Hpy166II	GTNNAC	2 cut(s)	496, 1075
Hpy188I	TCNGA	5 cut(s)	342, 633, 736, 1095, 1152
Hpy188III	TCNNGA	6 cut(s)	96, 311, 780, 858, 1126, 1227
Hpy8I	GTNNAC	2 cut(s)	496, 1075
HpyAV	CCTTC	4 cut(s)	4, 230, 418, 864
HpyCH4III	ACNGT	2 cut(s)	874, 896
HpyCH4IV	ACGT	3 cut(s)	571, 661, 889
HpyCH4V	TGCA	9 cut(s)	160, 275, 377, 407, 449, 596, 811, 1013, 1042
HpyF10VI	GCNNNNNNNGC	5 cut(s)	365, 374, 413, 687, 1112
HpyF3I	CTNAG	5 cut(s)	438, 723, 735, 900, 1080
HpySE526I	ACGT	3 cut(s)	571, 661, 889
HspAI	GCGC	1 cut(s)	231
KspAI	GTTAAC	1 cut(s)	496
Kzo9I	GATC	4 cut(s)	348, 540, 961, 1147
LmnI	GCTCC	2 cut(s)	442, 652
Lsp1109I	GCAGC	3 cut(s)	361, 1127, 1148
LweI	GCATC	2 cut(s)	361, 741
MaeI	CTAG	1 cut(s)	554
MaeII	ACGT	3 cut(s)	571, 661, 889
MaeIII	GTNAC	5 cut(s)	183, 741, 890, 926, 940
MalI	GATC	4 cut(s)	350, 542, 963, 1149
MboI	GATC	4 cut(s)	348, 540, 961, 1147
MboII	GAAGA	5 cut(s)	252, 768, 815, 1165, 1182
MfeI	CAATTG	1 cut(s)	702
MhlI	GDGCHC	2 cut(s)	990, 1060
MlsI	TGGCCA	1 cut(s)	324
MluCI	AATT	6 cut(s)	108, 702, 806, 863, 931, 1031
MluNI	TGGCCA	1 cut(s)	324
MlyI	GAGTC	6 cut(s)	64, 278, 308, 599, 740, 1070
MmeI	TCCRAC	2 cut(s)	61, 675
Mox20I	TGGCCA	1 cut(s)	324
MroXI	GAANNNNTTC	1 cut(s)	196
MscI	TGGCCA	1 cut(s)	324
MseI	TTAA	4 cut(s)	474, 495, 771, 1160
MslI	CAYNNNNRTG	1 cut(s)	165
Msp20I	TGGCCA	1 cut(s)	324
MspA1I	CMGCKG	2 cut(s)	923, 1084
MspI	CCGG	3 cut(s)	354, 877, 1007
MspR9I	CCNGG	3 cut(s)	36, 321, 651
MunI	CAATTG	1 cut(s)	702
MvaI	CCWGG	3 cut(s)	36, 321, 651
MwoI	GCNNNNNNNGC	5 cut(s)	365, 374, 413, 687, 1112
NcoI	CCATGG	1 cut(s)	621
NdeII	GATC	4 cut(s)	348, 540, 961, 1147
NlaIV	GGNNCC	2 cut(s)	358, 609
NmuCI	GTSAC	4 cut(s)	183, 741, 890, 926
NspI	RCATGY	2 cut(s)	89, 449
PaeI	GCATGC	1 cut(s)	449
PciI	ACATGT	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	196
PfeI	GAWTC	4 cut(s)	67, 92, 628, 707
PkrI	GCNGC	3 cut(s)	376, 1117, 1138
PleI	GAGTC	6 cut(s)	63, 278, 308, 598, 739, 1070
PpsI	GAGTC	6 cut(s)	63, 278, 308, 598, 739, 1070
PscI	ACATGT	1 cut(s)	85
Psp1406I	AACGTT	1 cut(s)	661
Psp6I	CCWGG	3 cut(s)	34, 319, 649
PspGI	CCWGG	3 cut(s)	34, 319, 649
PspN4I	GGNNCC	2 cut(s)	358, 609
PspPI	GGNCC	2 cut(s)	683, 995
PstI	CTGCAG	1 cut(s)	598
PstNI	CAGNNNCTG	1 cut(s)	650
PvuII	CAGCTG	2 cut(s)	923, 1084
RsaI	GTAC	2 cut(s)	296, 1254
RsaNI	GTAC	2 cut(s)	295, 1253
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	4 cut(s)	474, 495, 771, 1160
SatI	GCNGC	3 cut(s)	375, 1116, 1137
Sau3AI	GATC	4 cut(s)	348, 540, 961, 1147
Sau96I	GGNCC	2 cut(s)	683, 995
ScaI	AGTACT	1 cut(s)	1254
SchI	GAGTC	6 cut(s)	64, 278, 308, 599, 740, 1070
ScrFI	CCNGG	3 cut(s)	36, 321, 651
SduI	GDGCHC	2 cut(s)	990, 1060
SfaNI	GCATC	2 cut(s)	361, 741
SfcI	CTRYAG	1 cut(s)	594
SinI	GGWCC	1 cut(s)	683
SmiMI	CAYNNNNRTG	1 cut(s)	165
SphI	GCATGC	1 cut(s)	449
Sse9I	AATT	6 cut(s)	108, 702, 806, 863, 931, 1031
SsiI	CCGC	1 cut(s)	681
SspMI	CTAG	1 cut(s)	554
StyD4I	CCNGG	3 cut(s)	34, 319, 649
StyI	CCWWGG	3 cut(s)	522, 621, 949
TaaI	ACNGT	2 cut(s)	874, 896
TaiI	ACGT	3 cut(s)	574, 664, 892
TaqI	TCGA	1 cut(s)	585
TasI	AATT	6 cut(s)	108, 702, 806, 863, 931, 1031
TatI	WGTACW	2 cut(s)	294, 1252
TfiI	GAWTC	4 cut(s)	67, 92, 628, 707
Tru1I	TTAA	4 cut(s)	474, 495, 771, 1160
Tru9I	TTAA	4 cut(s)	474, 495, 771, 1160
TscAI	CASTG	2 cut(s)	603, 750
TseFI	GTSAC	4 cut(s)	183, 741, 890, 926
TseI	GCWGC	3 cut(s)	374, 1115, 1136
Tsp45I	GTSAC	4 cut(s)	183, 741, 890, 926
TspDTI	ATGAA	5 cut(s)	17, 116, 183, 437, 672
TspGWI	ACGGA	1 cut(s)	883
TspRI	CASTG	2 cut(s)	603, 750
VpaK11BI	GGWCC	1 cut(s)	683
XceI	RCATGY	2 cut(s)	89, 449
XmnI	GAANNNNTTC	1 cut(s)	196
XspI	CTAG	1 cut(s)	554
ZrmI	AGTACT	1 cut(s)	1254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.