Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006463

Physical Location & Seq

Genomic Coordinates Reverse (-)

7177181 .. 7178476

Gene Structure 1296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00165440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCTCAACTGAATCTTGCAATTGTTGGACATGTCGATTCGGGAAAATCGACACTTTCAGGTAGACTGCTTCATCTATTGGGAAGGATATCCAAAAAAGAAATGCACAAAAATGAGAAAGAGGCAAAGTCACAGGGCAAGGGGTCATTTGCATATGCGTGGGCATTGGATGAGAGCGTAGAAGAAAGAGAAAGAGGAATAACTATGAGTGTAGCTGTTGCATATTTTGACACCAAAAAATACAAGGGAGGACAGACTAAGGAGCATGCACAGATCATCAAAAGCTTCGGCGTCAAGCAGATTATAGTTGCTGTTAACAAGATGGATGTTGTTGGCTACTCCAAGGATAGATTCGATGAAATCAAACACACACTAGGAACATTTCTCTGGCGTTCCTGTCGTTTCGAAAATTCTTCGGTGTGTTGGGTTCCATTGAGTGCCATGGAGAATCAGAACTTAGTGTCAGTTCCTTCTGATGACCGTTTGTTGTCTTGGTATAGCGGACTTTGCTTCTTGGATGCAGTTGATTCCCTTCAACCTCCTACGAGGGAGTCTGAGAAGGCACTGCTCATGCCTATATGTGATGTCATTAAATCTTCTAAAGGGCAGGTTTCTGCTTGTGGTAAATTGCAAGCTGGAGCTCTTCAAAATGGACTTAAGGTTCGGGTTATGCCTTCGGGAGAATTAGGGACTGTCCGGTCTTTAGAACGTGACGGCTCTCAGTCATGCTCAACTGCCACAGCTGGTGACAATGTGGCTGTTACTCTACAAGGGATTGATGATCGTCATGTGATGGCAGGAGGCGTGCTATGTGACCCTGATGTTCCAGTTGCATTTGCGAAACATTTGGAATTGAATGTGCAACTTTTGGACGGGGCAAAGCCTATGTTGGTTGGCTCTCAGCTGGAGTTTCACATACACCACGCAAAGGAGGCAGCAAGAGTCGTGAAAATAGCTTCATTACTTGATCCGAAGACTCTTAAAGAGGCGAAAAGGTCTCCTCGCTGTCTTCTCGCAAAGCAGGTAGCTGTTATAGAGGTAGTTCTGCAAGGGCCAGTCTGTGTGGTGGAGTACTCCAAGTGTAGAGCACTAGGGAACGTTTCTTTGAGAGCATTAGGAAACACTGTGGCCCTCGGCAAGGTAACACGAATAATCGAGAAGCAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000288 GO:0000291 GO:0000956 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019222 GO:0019439 GO:0019538 GO:0023052 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034641 GO:0034645 GO:0034655 GO:0035639 GO:0036094 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043603 GO:0043604 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 ko05134 map03015 map05134

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 GTP_EFTU_D3

Protein Analysis

389

Amino Acids

42.35

Weight (kDa)

9.1

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	4 - 82	3.9e-17	Elongation factor Tu GTP binding domain
GTP_EFTU	PF00009	84 - 177	2.1e-09	Elongation factor Tu GTP binding domain
GTP-eEF1A_C	PF22594	283 - 382	4.5e-24	GTP-eEF1A C-terminal domain-like
GTP_EFTU_D3	PF03143	294 - 384	3.7e-07	Elongation factor Tu C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10630 AT5G10630 AT5G10630 AT5G10630 AT5G10630
fragaria_vesca	FvH4_2g38640 FvH4_5g19710
malus_domestica	MD08G1131300.v1.1
prunus_persica	Prupe.1G461200_v2.0.a1 Prupe.1G461200_v2.0.a1 Prupe.1G461200_v2.0.a1 Prupe.1G461200_v2.0.a1 Prupe.1G461200_v2.0.a1
pyrus_communis	pycom08g11000
rosa_chinensis	RchiOBHm_Chr6g0302681
rosa_laevigata	RLG00000011148
rosa_multiflora	Rmu_co8422569.1_g000001 Rmu_sc0023908.1_g000003 Rmu_sc0043029.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165440
rosa_rugosa	Rorug06G0316100
rosa_samantha	Rh6AG429400 Rh6BG473100 Rh6CG441700 Rh6DG428500
rosa_wichuraiana	Rw6G037170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	697
Acc36I	ACCTGC	2 cut(s)	598, 1012
AccI	GTMKAC	1 cut(s)	64
AciI	CCGC	1 cut(s)	501
AclI	AACGTT	1 cut(s)	1098
AclWI	GGATC	1 cut(s)	962
AcsI	RAATTY	1 cut(s)	409
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	1 cut(s)	1073
AfiI	CCNNNNNNNGG	2 cut(s)	928, 1138
AflII	CTTAAG	1 cut(s)	656
AflIII	ACRYGT	1 cut(s)	31
AgsI	TTSAA	3 cut(s)	536, 647, 856
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AloI	GAACNNNNNNTCC	2 cut(s)	645, 677
AluBI	AGCT	8 cut(s)	215, 285, 635, 641, 743, 904, 956, 1028
AluI	AGCT	8 cut(s)	215, 285, 635, 641, 743, 904, 956, 1028
Alw21I	GWGCWC	2 cut(s)	643, 1090
Alw26I	GTCTC	1 cut(s)	1002
AlwI	GGATC	1 cut(s)	962
AoxI	GGCC	2 cut(s)	1052, 1128
ApeKI	GCWGC	1 cut(s)	935
ApoI	RAATTY	1 cut(s)	409
ArsI	GACNNNNNNTTYG	2 cut(s)	645, 677
AspS9I	GGNCC	2 cut(s)	1052, 1129
AsuHPI	GGTGA	1 cut(s)	758
AsuII	TTCGAA	1 cut(s)	405
BanII	GRGCYC	1 cut(s)	643
BbsI	GAAGAC	2 cut(s)	980, 1001
Bbv12I	GWGCWC	2 cut(s)	643, 1090
BbvI	GCAGC	1 cut(s)	947
BccI	CCATC	2 cut(s)	316, 787
BceAI	ACGGC	1 cut(s)	730
BcoDI	GTCTC	1 cut(s)	1002
BfaI	CTAG	2 cut(s)	374, 1091
BfrI	CTTAAG	1 cut(s)	656
BfuAI	ACCTGC	2 cut(s)	598, 1012
BisI	GCNGC	1 cut(s)	936
BlsI	GCNGC	1 cut(s)	937
BmcAI	AGTACT	1 cut(s)	1073
BmgT120I	GGNCC	2 cut(s)	1052, 1129
BmiI	GGNNCC	1 cut(s)	429
BmsI	GCATC	1 cut(s)	508
BpiI	GAAGAC	2 cut(s)	980, 1001
BpmI	CTGGAG	2 cut(s)	657, 926
Bpu14I	TTCGAA	1 cut(s)	405
BsaHI	GRCGYC	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	1002
BsaJI	CCNNGG	3 cut(s)	342, 441, 1132
BsaWI	WCCGGW	1 cut(s)	696
Bsc4I	CCNNNNNNNGG	2 cut(s)	928, 1138
Bse1I	ACTGG	2 cut(s)	827, 1055
BseDI	CCNNGG	3 cut(s)	342, 441, 1132
BseGI	GGATG	3 cut(s)	175, 331, 523
BseLI	CCNNNNNNNGG	2 cut(s)	928, 1138
BseMII	CTCAG	3 cut(s)	546, 734, 914
BseNI	ACTGG	2 cut(s)	827, 1055
BseRI	GAGGAG	1 cut(s)	990
BseXI	GCAGC	1 cut(s)	947
BshFI	GGCC	2 cut(s)	1054, 1130
BsiHKAI	GWGCWC	2 cut(s)	643, 1090
BsiSI	CCGG	1 cut(s)	697
BslFI	GGGAC	1 cut(s)	703
BslI	CCNNNNNNNGG	2 cut(s)	928, 1138
BsmAI	GTCTC	1 cut(s)	1002
BsmFI	GGGAC	1 cut(s)	703
BsnI	GGCC	2 cut(s)	1054, 1130
Bso31I	GGTCTC	1 cut(s)	1002
Bsp119I	TTCGAA	1 cut(s)	405
Bsp1286I	GDGCHC	2 cut(s)	643, 1090
Bsp143I	GATC	3 cut(s)	273, 781, 967
Bsp19I	CCATGG	1 cut(s)	441
BspACI	CCGC	1 cut(s)	501
BspANI	GGCC	2 cut(s)	1054, 1130
BspCNI	CTCAG	3 cut(s)	547, 733, 913
BspLI	GGNNCC	1 cut(s)	429
BspMI	ACCTGC	2 cut(s)	598, 1012
BspPI	GGATC	1 cut(s)	962
BspQI	GCTCTTC	1 cut(s)	648
BspT104I	TTCGAA	1 cut(s)	405
BspTI	CTTAAG	1 cut(s)	656
BspTNI	GGTCTC	1 cut(s)	1002
BsrI	ACTGG	2 cut(s)	827, 1055
BssECI	CCNNGG	3 cut(s)	342, 441, 1132
BssMI	GATC	3 cut(s)	273, 781, 967
BssNI	GRCGYC	1 cut(s)	291
BssT1I	CCWWGG	2 cut(s)	342, 441
Bst4CI	ACNGT	3 cut(s)	482, 694, 1126
Bst6I	CTCTTC	1 cut(s)	648
BstACI	GRCGYC	1 cut(s)	291
BstAFI	CTTAAG	1 cut(s)	656
BstBI	TTCGAA	1 cut(s)	405
BstC8I	GCNNGC	3 cut(s)	267, 633, 806
BstDEI	CTNAG	5 cut(s)	258, 457, 555, 720, 900
BstDSI	CCRYGG	1 cut(s)	441
BstENI	CCTNNNNNAGG	1 cut(s)	1136
BstF5I	GGATG	3 cut(s)	175, 331, 523
BstKTI	GATC	3 cut(s)	276, 784, 970
BstMAI	GTCTC	1 cut(s)	1002
BstMBI	GATC	3 cut(s)	273, 781, 967
BstMWI	GCNNNNNNNGC	2 cut(s)	507, 932
BstNSI	RCATGY	2 cut(s)	35, 269
BstV1I	GCAGC	1 cut(s)	947
BstV2I	GAAGAC	2 cut(s)	980, 1001
BsuRI	GGCC	2 cut(s)	1054, 1130
BtgI	CCRYGG	1 cut(s)	441
BtsCI	GGATG	3 cut(s)	175, 331, 523
BtsI	GCAGTG	1 cut(s)	563
BtsIMutI	CAGTG	2 cut(s)	563, 1122
BveI	ACCTGC	2 cut(s)	598, 1012
Cac8I	GCNNGC	3 cut(s)	267, 633, 806
Cfr13I	GGNCC	2 cut(s)	1052, 1129
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	1072
CviAII	CATG	6 cut(s)	32, 266, 442, 571, 726, 788
CviQI	GTAC	1 cut(s)	1072
DdeI	CTNAG	5 cut(s)	258, 457, 555, 720, 900
DpnI	GATC	3 cut(s)	275, 783, 969
DpnII	GATC	3 cut(s)	273, 781, 967
DrdI	GACNNNNNNGTC	1 cut(s)	697
DseDI	GACNNNNNNGTC	1 cut(s)	697
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Ecl136II	GAGCTC	1 cut(s)	641
Eco130I	CCWWGG	2 cut(s)	342, 441
Eco24I	GRGCYC	1 cut(s)	643
Eco31I	GGTCTC	1 cut(s)	1002
Eco32I	GATATC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	641
EcoICRI	GAGCTC	1 cut(s)	641
EcoNI	CCTNNNNNAGG	1 cut(s)	1136
EcoRV	GATATC	1 cut(s)	90
EcoT14I	CCWWGG	2 cut(s)	342, 441
EcoT38I	GRGCYC	1 cut(s)	643
ErhI	CCWWGG	2 cut(s)	342, 441
FaeI	CATG	6 cut(s)	35, 269, 445, 574, 729, 791
FaqI	GGGAC	1 cut(s)	703
FatI	CATG	6 cut(s)	31, 265, 441, 570, 725, 787
FauNDI	CATATG	1 cut(s)	154
FblI	GTMKAC	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	936
FokI	GGATG	3 cut(s)	182, 338, 530
FriOI	GRGCYC	1 cut(s)	643
Fsp4HI	GCNGC	1 cut(s)	936
FspBI	CTAG	2 cut(s)	374, 1091
GluI	GCNGC	1 cut(s)	936
GsuI	CTGGAG	2 cut(s)	657, 926
HaeIII	GGCC	2 cut(s)	1054, 1130
HapII	CCGG	1 cut(s)	697
HgaI	GACGC	1 cut(s)	280
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	6 cut(s)	35, 269, 445, 574, 729, 791
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	283
HinfI	GANTC	8 cut(s)	13, 38, 351, 448, 527, 551, 942, 976
HpaI	GTTAAC	1 cut(s)	316
HpaII	CCGG	1 cut(s)	697
HphI	GGTGA	1 cut(s)	758
Hpy166II	GTNNAC	2 cut(s)	65, 316
Hpy188I	TCNGA	4 cut(s)	453, 475, 556, 972
Hpy188III	TCNNGA	4 cut(s)	42, 678, 946, 1156
Hpy8I	GTNNAC	2 cut(s)	65, 316
HpyAV	CCTTC	5 cut(s)	78, 480, 542, 553, 684
HpyCH4III	ACNGT	3 cut(s)	482, 694, 1126
HpyCH4IV	ACGT	2 cut(s)	709, 1098
HpyF10VI	GCNNNNNNNGC	2 cut(s)	507, 932
HpyF3I	CTNAG	5 cut(s)	258, 457, 555, 720, 900
HpySE526I	ACGT	2 cut(s)	709, 1098
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	6 cut(s)	35, 269, 445, 574, 729, 791
KspAI	GTTAAC	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	273, 781, 967
LguI	GCTCTTC	1 cut(s)	648
LmnI	GCTCC	2 cut(s)	262, 638
Lsp1109I	GCAGC	1 cut(s)	947
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	2 cut(s)	374, 1091
MaeII	ACGT	2 cut(s)	709, 1098
MaeIII	GTNAC	6 cut(s)	129, 710, 746, 760, 812, 1141
MalI	GATC	3 cut(s)	275, 783, 969
MboI	GATC	3 cut(s)	273, 781, 967
MboII	GAAGA	6 cut(s)	194, 405, 588, 635, 985, 1001
MfeI	CAATTG	1 cut(s)	21
MhlI	GDGCHC	2 cut(s)	643, 1090
MluCI	AATT	5 cut(s)	21, 409, 626, 683, 851
MlyI	GAGTC	3 cut(s)	560, 951, 970
MmeI	TCCRAC	1 cut(s)	7
MseI	TTAA	4 cut(s)	315, 591, 657, 981
MslI	CAYNNNNRTG	2 cut(s)	111, 157
MspA1I	CMGCKG	2 cut(s)	743, 904
MspCI	CTTAAG	1 cut(s)	656
MspI	CCGG	1 cut(s)	697
MunI	CAATTG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	507, 932
NcoI	CCATGG	1 cut(s)	441
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	3 cut(s)	273, 781, 967
NlaIII	CATG	6 cut(s)	35, 269, 445, 574, 729, 791
NlaIV	GGNNCC	1 cut(s)	429
NmeAIII	GCCGAG	1 cut(s)	1113
NmuCI	GTSAC	4 cut(s)	129, 710, 746, 812
NspI	RCATGY	2 cut(s)	35, 269
NspV	TTCGAA	1 cut(s)	405
PaeI	GCATGC	1 cut(s)	269
PciI	ACATGT	1 cut(s)	31
PciSI	GCTCTTC	1 cut(s)	648
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PfeI	GAWTC	5 cut(s)	13, 38, 351, 448, 527
PkrI	GCNGC	1 cut(s)	937
PleI	GAGTC	3 cut(s)	559, 950, 970
PpsI	GAGTC	3 cut(s)	559, 950, 970
PscI	ACATGT	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	643
Psp1406I	AACGTT	1 cut(s)	1098
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	2 cut(s)	1052, 1129
PvuII	CAGCTG	2 cut(s)	743, 904
RsaI	GTAC	1 cut(s)	1073
RsaNI	GTAC	1 cut(s)	1072
RseI	CAYNNNNRTG	2 cut(s)	111, 157
SacI	GAGCTC	1 cut(s)	643
SapI	GCTCTTC	1 cut(s)	648
SaqAI	TTAA	4 cut(s)	315, 591, 657, 981
SatI	GCNGC	1 cut(s)	936
Sau3AI	GATC	3 cut(s)	273, 781, 967
Sau96I	GGNCC	2 cut(s)	1052, 1129
ScaI	AGTACT	1 cut(s)	1073
SchI	GAGTC	3 cut(s)	560, 951, 970
SduI	GDGCHC	2 cut(s)	643, 1090
SfaNI	GCATC	1 cut(s)	508
SfuI	TTCGAA	1 cut(s)	405
SmiMI	CAYNNNNRTG	2 cut(s)	111, 157
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
SphI	GCATGC	1 cut(s)	269
Sse9I	AATT	5 cut(s)	21, 409, 626, 683, 851
SsiI	CCGC	1 cut(s)	501
SspMI	CTAG	2 cut(s)	374, 1091
SstI	GAGCTC	1 cut(s)	643
StyI	CCWWGG	2 cut(s)	342, 441
TaaI	ACNGT	3 cut(s)	482, 694, 1126
TaiI	ACGT	2 cut(s)	712, 1101
TaqI	TCGA	5 cut(s)	36, 50, 354, 405, 1155
TasI	AATT	5 cut(s)	21, 409, 626, 683, 851
TatI	WGTACW	1 cut(s)	1071
TfiI	GAWTC	5 cut(s)	13, 38, 351, 448, 527
Tru1I	TTAA	4 cut(s)	315, 591, 657, 981
Tru9I	TTAA	4 cut(s)	315, 591, 657, 981
TscAI	CASTG	2 cut(s)	570, 1129
TseFI	GTSAC	4 cut(s)	129, 710, 746, 812
TseI	GCWGC	1 cut(s)	935
Tsp45I	GTSAC	4 cut(s)	129, 710, 746, 812
TspDTI	ATGAA	3 cut(s)	62, 372, 948
TspRI	CASTG	2 cut(s)	570, 1129
Vha464I	CTTAAG	1 cut(s)	656
XagI	CCTNNNNNAGG	1 cut(s)	1136
XapI	RAATTY	1 cut(s)	409
XceI	RCATGY	2 cut(s)	35, 269
XmiI	GTMKAC	1 cut(s)	64
XspI	CTAG	2 cut(s)	374, 1091
ZrmI	AGTACT	1 cut(s)	1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.