Rw6G037170

HBS1-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
61589062 .. 61590329
1268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G037170.1

Sequence Viewer

Length: 1224 bp
ATGGCTCAACTGAATCTTGCAATTGTTGGACATGTCGATTCGGGAAAATCGACACTTTCAGGTAGACTGCTTCATCTATTGGGAAGGATATCCAAAAAAGAAATGCACAAAAATGAGAAAGAGGCAAAGTCACAGGGCAAGGGGTCATTTGCATATGCGTGGGCATTGGATGAGAGCGTAGAAGAAAGAGAAAGAGGAATAACTATGAGTGTAGCTGTTGCATATTTTGACTCCAAAAAGTACAAGGTTGTTGTGCTGGACTCTCCTGGCCACAGAGACTTTGTCCCGAACATGATCTCCGGCGCAACACAAGCCGATGCTGCAGTACTTGTTGTTGATGGTTCACATGGTGCATTTGAAGCCGGTATGAAGGGAGGACAGACTAAGGAGCACGCACAGATCATCAAAAGCTTCGGCGTCAAGCAGATTATAGTTGCTGTTAACAAGATGGATGTTGTTGGCTACTCCAAGGATAGATTTGATGAAATCAAACACACACTAGGAACATTTCTCAGGCGTTCCTGTCGTTTCGAAAATTCTTCGGTGTGTTGGGTTCCATTGAGTGCCATGGAGAATCAGAACTTGGTGTCAGCTCCTTCTGATGACCGTTTGTTGTCTTGGTATAGCGGACTTTGCTTCTTGGATGCAGTTGATTCCCTTCAACCTCCGAAGAGAGAGTCTGAGAAGTTACTGCTCATGCCTATATGTGATGTCATTAAATCTTCTAAAGGGCAGGTTTCTGCTTGTGGTAAATTGCAAGCTGGAGCTCTTCAAAATGGACTTAAGGTTCGGGTTATGCCTTCGGGAGAATTAGGGACTGTCCGGTCTTTAGAACGTGACGGCTCTCAGTCATGCTCAACTGCCACAGCTGGTGACAATGTGGCTGTTACTCTACAAGGGATTGATGATCGTCATGTGATGGCAGGAGGCGTGCTATGTGACCCTGATGTTCCAGTTGCATTTGCGAAACATTTGGAATTGAATCTGGAGTTTCACATACACCACGCAAAGGAGGCAGCAAGAGTCGTGAAAATAGCTTCATTACTTGATCCGAAGACTCTTAAAGTGGCGAAAAGGTCTCCTCGCTGTCTTCTTGCAAAGCAGGTAGCCGTTATAGAGGTAGTTCTGCAAGGACCAGTTTGTGTGGTGGAGTACTCCATGTGTAGAGCTCTAGGGAACGTTTCTTTGAGAGCGTTAGGAACACCGTGGCCCTCGGCAAGGTAA

Protein Analysis

407

Amino Acids

44.04

Weight (kDa)

8.89

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 4 - 220 7e-49 Elongation factor Tu GTP binding domain
GTP-eEF1A_C PF22594 329 - 398 6.2e-15 GTP-eEF1A C-terminal domain-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 823
Acc36I ACCTGC 2 cut(s) 724, 1093
AccI GTMKAC 1 cut(s) 64
AciI CCGC 1 cut(s) 627
AclI AACGTT 1 cut(s) 1179
AclWI GGATC 1 cut(s) 1043
AcoI YGGCCR 1 cut(s) 268
AcsI RAATTY 1 cut(s) 535
AcyI GRCGYC 1 cut(s) 417
AdeI CACNNNGTG 1 cut(s) 350
AfaI GTAC 3 cut(s) 242, 327, 1154
AfiI CCNNNNNNNGG 2 cut(s) 1009, 1218
AflII CTTAAG 1 cut(s) 782
AflIII ACRYGT 1 cut(s) 31
AgsI TTSAA 4 cut(s) 359, 662, 773, 982
AjnI CCWGG 1 cut(s) 265
AjuI GAANNNNNNNTTGG 2 cut(s) 566, 598
AloI GAACNNNNNNTCC 4 cut(s) 281, 313, 771, 803
AluBI AGCT 8 cut(s) 215, 411, 593, 761, 767, 869, 1037, 1169
AluI AGCT 8 cut(s) 215, 411, 593, 761, 767, 869, 1037, 1169
Alw21I GWGCWC 3 cut(s) 393, 769, 1171
Alw26I GTCTC 2 cut(s) 270, 1083
AlwI GGATC 1 cut(s) 1043
AoxI GGCC 2 cut(s) 268, 1208
ApeKI GCWGC 2 cut(s) 320, 1016
ApoI RAATTY 1 cut(s) 535
ArsI GACNNNNNNTTYG 4 cut(s) 662, 694, 771, 803
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 1133, 1209
AsuHPI GGTGA 1 cut(s) 884
AsuII TTCGAA 1 cut(s) 531
AvaII GGWCC 1 cut(s) 1133
BalI TGGCCA 1 cut(s) 270
BanII GRGCYC 2 cut(s) 769, 1171
BbsI GAAGAC 2 cut(s) 1061, 1082
Bbv12I GWGCWC 3 cut(s) 393, 769, 1171
BbvI GCAGC 2 cut(s) 307, 1028
BccI CCATC 3 cut(s) 332, 442, 913
BceAI ACGGC 2 cut(s) 856, 1094
BciT130I CCWGG 1 cut(s) 267
BcoDI GTCTC 2 cut(s) 270, 1083
BfaI CTAG 2 cut(s) 500, 1172
BfmI CTRYAG 1 cut(s) 321
BfrI CTTAAG 1 cut(s) 782
BfuAI ACCTGC 2 cut(s) 724, 1093
BisI GCNGC 2 cut(s) 321, 1017
BlsI GCNGC 2 cut(s) 322, 1018
BmcAI AGTACT 2 cut(s) 327, 1154
Bme1390I CCNGG 1 cut(s) 267
Bme18I GGWCC 1 cut(s) 1133
BmgT120I GGNCC 2 cut(s) 1133, 1209
BmiI GGNNCC 1 cut(s) 555
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 2 cut(s) 307, 634
BpiI GAAGAC 2 cut(s) 1061, 1082
BpmI CTGGAG 2 cut(s) 783, 1007
Bpu14I TTCGAA 1 cut(s) 531
BsaHI GRCGYC 1 cut(s) 417
BsaI GGTCTC 1 cut(s) 1083
BsaJI CCNNGG 4 cut(s) 468, 567, 1205, 1212
BsaWI WCCGGW 1 cut(s) 822
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 2 cut(s) 1009, 1218
Bse118I RCCGGY 1 cut(s) 362
Bse1I ACTGG 2 cut(s) 953, 1136
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 4 cut(s) 468, 567, 1205, 1212
BseGI GGATG 3 cut(s) 175, 457, 649
BseLI CCNNNNNNNGG 2 cut(s) 1009, 1218
BseMII CTCAG 3 cut(s) 526, 672, 860
BseNI ACTGG 2 cut(s) 953, 1136
BseRI GAGGAG 1 cut(s) 1071
BseXI GCAGC 2 cut(s) 307, 1028
BshFI GGCC 2 cut(s) 270, 1210
BsiHKAI GWGCWC 3 cut(s) 393, 769, 1171
BsiSI CCGG 3 cut(s) 300, 363, 823
BslFI GGGAC 2 cut(s) 269, 829
BslI CCNNNNNNNGG 2 cut(s) 1009, 1218
BsmAI GTCTC 2 cut(s) 270, 1083
BsmFI GGGAC 2 cut(s) 269, 829
BsnI GGCC 2 cut(s) 270, 1210
Bso31I GGTCTC 1 cut(s) 1083
Bsp119I TTCGAA 1 cut(s) 531
Bsp1286I GDGCHC 3 cut(s) 393, 769, 1171
Bsp143I GATC 4 cut(s) 294, 399, 907, 1048
Bsp19I CCATGG 1 cut(s) 567
BspACI CCGC 1 cut(s) 627
BspANI GGCC 2 cut(s) 270, 1210
BspCNI CTCAG 3 cut(s) 525, 673, 859
BspLI GGNNCC 1 cut(s) 555
BspMAI CTGCAG 1 cut(s) 325
BspMI ACCTGC 2 cut(s) 724, 1093
BspPI GGATC 1 cut(s) 1043
BspQI GCTCTTC 1 cut(s) 774
BspT104I TTCGAA 1 cut(s) 531
BspTI CTTAAG 1 cut(s) 782
BspTNI GGTCTC 1 cut(s) 1083
BsrFI RCCGGY 1 cut(s) 362
BsrI ACTGG 2 cut(s) 953, 1136
BssAI RCCGGY 1 cut(s) 362
BssECI CCNNGG 4 cut(s) 468, 567, 1205, 1212
BssMI GATC 4 cut(s) 294, 399, 907, 1048
BssNI GRCGYC 1 cut(s) 417
BssT1I CCWWGG 2 cut(s) 468, 567
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 3 cut(s) 608, 820, 1206
Bst6I CTCTTC 2 cut(s) 665, 774
BstACI GRCGYC 1 cut(s) 417
BstAFI CTTAAG 1 cut(s) 782
BstBI TTCGAA 1 cut(s) 531
BstC8I GCNNGC 3 cut(s) 393, 759, 932
BstDEI CTNAG 4 cut(s) 384, 512, 681, 846
BstDSI CCRYGG 2 cut(s) 567, 1205
BstENI CCTNNNNNAGG 1 cut(s) 1216
BstF5I GGATG 3 cut(s) 175, 457, 649
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 4 cut(s) 297, 402, 910, 1051
BstMAI GTCTC 2 cut(s) 270, 1083
BstMBI GATC 4 cut(s) 294, 399, 907, 1048
BstMWI GCNNNNNNNGC 5 cut(s) 311, 320, 359, 633, 1013
BstNI CCWGG 1 cut(s) 267
BstNSI RCATGY 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 265
BstSFI CTRYAG 1 cut(s) 321
BstV1I GCAGC 2 cut(s) 307, 1028
BstV2I GAAGAC 2 cut(s) 1061, 1082
BsuRI GGCC 2 cut(s) 270, 1210
BtgI CCRYGG 2 cut(s) 567, 1205
BtsCI GGATG 3 cut(s) 175, 457, 649
BveI ACCTGC 2 cut(s) 724, 1093
Cac8I GCNNGC 3 cut(s) 393, 759, 932
CfoI GCGC 1 cut(s) 305
Cfr10I RCCGGY 1 cut(s) 362
Cfr13I GGNCC 2 cut(s) 1133, 1209
CseI GACGC 1 cut(s) 406
Csp6I GTAC 3 cut(s) 241, 326, 1153
CviAII CATG 8 cut(s) 32, 292, 347, 568, 697, 852, 914, 1159
CviQI GTAC 3 cut(s) 241, 326, 1153
DdeI CTNAG 4 cut(s) 384, 512, 681, 846
DpnI GATC 4 cut(s) 296, 401, 909, 1050
DpnII GATC 4 cut(s) 294, 399, 907, 1048
DraIII CACNNNGTG 1 cut(s) 350
DrdI GACNNNNNNGTC 1 cut(s) 823
DseDI GACNNNNNNGTC 1 cut(s) 823
EaeI YGGCCR 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 665, 774
EarI CTCTTC 2 cut(s) 665, 774
Ecl136II GAGCTC 2 cut(s) 767, 1169
Eco130I CCWWGG 2 cut(s) 468, 567
Eco24I GRGCYC 2 cut(s) 769, 1171
Eco31I GGTCTC 1 cut(s) 1083
Eco32I GATATC 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 1133
Eco53kI GAGCTC 2 cut(s) 767, 1169
EcoICRI GAGCTC 2 cut(s) 767, 1169
EcoNI CCTNNNNNAGG 1 cut(s) 1216
EcoRII CCWGG 1 cut(s) 265
EcoRV GATATC 1 cut(s) 90
EcoT14I CCWWGG 2 cut(s) 468, 567
EcoT38I GRGCYC 2 cut(s) 769, 1171
ErhI CCWWGG 2 cut(s) 468, 567
FaeI CATG 8 cut(s) 35, 295, 350, 571, 700, 855, 917, 1162
FaqI GGGAC 2 cut(s) 269, 829
FatI CATG 8 cut(s) 31, 291, 346, 567, 696, 851, 913, 1158
FauNDI CATATG 1 cut(s) 154
FblI GTMKAC 1 cut(s) 64
Fnu4HI GCNGC 2 cut(s) 321, 1017
FokI GGATG 3 cut(s) 182, 464, 656
FriOI GRGCYC 2 cut(s) 769, 1171
Fsp4HI GCNGC 2 cut(s) 321, 1017
FspBI CTAG 2 cut(s) 500, 1172
GlaI GCGC 1 cut(s) 304
GluI GCNGC 2 cut(s) 321, 1017
GsuI CTGGAG 2 cut(s) 783, 1007
HaeIII GGCC 2 cut(s) 270, 1210
HapII CCGG 3 cut(s) 300, 363, 823
HgaI GACGC 1 cut(s) 406
HhaI GCGC 1 cut(s) 305
Hin1I GRCGYC 1 cut(s) 417
Hin1II CATG 8 cut(s) 35, 295, 350, 571, 700, 855, 917, 1162
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HindIII AAGCTT 1 cut(s) 409
HpaI GTTAAC 1 cut(s) 442
HpaII CCGG 3 cut(s) 300, 363, 823
HphI GGTGA 1 cut(s) 884
Hpy166II GTNNAC 3 cut(s) 65, 344, 442
Hpy188I TCNGA 5 cut(s) 579, 601, 669, 682, 1053
Hpy188III TCNNGA 5 cut(s) 42, 286, 804, 986, 1027
Hpy8I GTNNAC 3 cut(s) 65, 344, 442
HpyAV CCTTC 5 cut(s) 78, 364, 606, 668, 810
HpyCH4III ACNGT 3 cut(s) 608, 820, 1206
HpyCH4IV ACGT 2 cut(s) 835, 1179
HpyF10VI GCNNNNNNNGC 5 cut(s) 311, 320, 359, 633, 1013
HpyF3I CTNAG 4 cut(s) 384, 512, 681, 846
HpySE526I ACGT 2 cut(s) 835, 1179
Hsp92I GRCGYC 1 cut(s) 417
Hsp92II CATG 8 cut(s) 35, 295, 350, 571, 700, 855, 917, 1162
HspAI GCGC 1 cut(s) 303
KspAI GTTAAC 1 cut(s) 442
Kzo9I GATC 4 cut(s) 294, 399, 907, 1048
LguI GCTCTTC 1 cut(s) 774
LmnI GCTCC 3 cut(s) 388, 598, 764
Lsp1109I GCAGC 2 cut(s) 307, 1028
LweI GCATC 2 cut(s) 307, 634
MaeI CTAG 2 cut(s) 500, 1172
MaeII ACGT 2 cut(s) 835, 1179
MaeIII GTNAC 6 cut(s) 129, 687, 836, 872, 886, 938
MalI GATC 4 cut(s) 296, 401, 909, 1050
MboI GATC 4 cut(s) 294, 399, 907, 1048
MboII GAAGA 7 cut(s) 194, 531, 682, 714, 761, 1066, 1082
MfeI CAATTG 1 cut(s) 21
MhlI GDGCHC 3 cut(s) 393, 769, 1171
MlsI TGGCCA 1 cut(s) 270
MluCI AATT 5 cut(s) 21, 535, 752, 809, 977
MluNI TGGCCA 1 cut(s) 270
MlyI GAGTC 5 cut(s) 224, 254, 686, 1032, 1051
MmeI TCCRAC 1 cut(s) 7
MnlI CCTC 9 cut(s) 115, 188, 368, 675, 920, 1006, 1092, 1111, 1222
Mox20I TGGCCA 1 cut(s) 270
MscI TGGCCA 1 cut(s) 270
MseI TTAA 4 cut(s) 441, 717, 783, 1062
MslI CAYNNNNRTG 2 cut(s) 111, 157
Msp20I TGGCCA 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 869
MspCI CTTAAG 1 cut(s) 782
MspI CCGG 3 cut(s) 300, 363, 823
MspR9I CCNGG 1 cut(s) 267
MunI CAATTG 1 cut(s) 21
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 5 cut(s) 311, 320, 359, 633, 1013
NcoI CCATGG 1 cut(s) 567
NdeI CATATG 1 cut(s) 154
NdeII GATC 4 cut(s) 294, 399, 907, 1048
NlaIII CATG 8 cut(s) 35, 295, 350, 571, 700, 855, 917, 1162
NlaIV GGNNCC 1 cut(s) 555
NmeAIII GCCGAG 1 cut(s) 1193
NmuCI GTSAC 4 cut(s) 129, 836, 872, 938
NspI RCATGY 1 cut(s) 35
NspV TTCGAA 1 cut(s) 531
PciI ACATGT 1 cut(s) 31
PciSI GCTCTTC 1 cut(s) 774
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PfeI GAWTC 5 cut(s) 13, 38, 574, 653, 982
PflFI GACNNNGTC 1 cut(s) 281
PkrI GCNGC 2 cut(s) 322, 1018
PleI GAGTC 5 cut(s) 224, 254, 685, 1031, 1051
PpsI GAGTC 5 cut(s) 224, 254, 685, 1031, 1051
PscI ACATGT 1 cut(s) 31
Psp124BI GAGCTC 2 cut(s) 769, 1171
Psp1406I AACGTT 1 cut(s) 1179
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 555
PspPI GGNCC 2 cut(s) 1133, 1209
PstI CTGCAG 1 cut(s) 325
PsyI GACNNNGTC 1 cut(s) 281
PvuII CAGCTG 1 cut(s) 869
RsaI GTAC 3 cut(s) 242, 327, 1154
RsaNI GTAC 3 cut(s) 241, 326, 1153
RseI CAYNNNNRTG 2 cut(s) 111, 157
SacI GAGCTC 2 cut(s) 769, 1171
SapI GCTCTTC 1 cut(s) 774
SaqAI TTAA 4 cut(s) 441, 717, 783, 1062
SatI GCNGC 2 cut(s) 321, 1017
Sau3AI GATC 4 cut(s) 294, 399, 907, 1048
Sau96I GGNCC 2 cut(s) 1133, 1209
ScaI AGTACT 2 cut(s) 327, 1154
SchI GAGTC 5 cut(s) 224, 254, 686, 1032, 1051
ScrFI CCNGG 1 cut(s) 267
SduI GDGCHC 3 cut(s) 393, 769, 1171
SfaNI GCATC 2 cut(s) 307, 634
SfcI CTRYAG 1 cut(s) 321
SfuI TTCGAA 1 cut(s) 531
SinI GGWCC 1 cut(s) 1133
SmiMI CAYNNNNRTG 2 cut(s) 111, 157
SmlI CTYRAG 1 cut(s) 782
SmoI CTYRAG 1 cut(s) 782
Sse9I AATT 5 cut(s) 21, 535, 752, 809, 977
SsiI CCGC 1 cut(s) 627
SspMI CTAG 2 cut(s) 500, 1172
SstI GAGCTC 2 cut(s) 769, 1171
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 2 cut(s) 468, 567
TaaI ACNGT 3 cut(s) 608, 820, 1206
TaiI ACGT 2 cut(s) 838, 1182
TaqI TCGA 3 cut(s) 36, 50, 531
TasI AATT 5 cut(s) 21, 535, 752, 809, 977
TatI WGTACW 3 cut(s) 240, 325, 1152
TfiI GAWTC 5 cut(s) 13, 38, 574, 653, 982
Tru1I TTAA 4 cut(s) 441, 717, 783, 1062
Tru9I TTAA 4 cut(s) 441, 717, 783, 1062
TseFI GTSAC 4 cut(s) 129, 836, 872, 938
TseI GCWGC 2 cut(s) 320, 1016
Tsp45I GTSAC 4 cut(s) 129, 836, 872, 938
TspDTI ATGAA 4 cut(s) 62, 383, 498, 1029
Tth111I GACNNNGTC 1 cut(s) 281
Vha464I CTTAAG 1 cut(s) 782
VpaK11BI GGWCC 1 cut(s) 1133
XagI CCTNNNNNAGG 1 cut(s) 1216
XapI RAATTY 1 cut(s) 535
XceI RCATGY 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 64
XspI CTAG 2 cut(s) 500, 1172
ZrmI AGTACT 2 cut(s) 327, 1154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.