Rmu_co8422569.1_g000001

HBS1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8422569.1
Physical Location & Seq
Forward (+)
13 .. 1308
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8422569.1_g000001.1.cds

Sequence Viewer

Length: 1296 bp
atggctcaactgaatcttgcaattgttggacatgtcgattcgggaaaatcgacactttcaggtagactgcttcatctattgggaaggatatccaaaaaagaaatgcacaaaaatgagaaagaggcaaagtcacagggcaaggggtcatttgcatatgcgtgggcattggatgagagcgtagaagaaagagaaagaggaataactatgagtgtagctgttgcatattttgactccaaaaaatacaaggttgttgtgctggactctcctggccacagagactttgtcccgaacatgatctccggcgcaacacaagccgatgctgcagtacttgttgttgatggttcacatggtgcatttgaagccggtatgaagggaggacagactaaggagcacgcacagatcatcaaaagcttcggcgtcaagcagattatagttgctgttaacaagatggatgttgttggctactccaaggatagatttgatgaaatcaaacacacactaggaacatttctctggcgttcctgtcgtttcgaaaattcttcggtgtgttgggttccattgagtgccatggagaatcagaacttggtgtcagctccttctgatgaccgtttgttgtcttggtatagcggactttgcttcttggatgcagttgattcccttcaacctccgaagagagagtctgagaagttactgctcatgcctatatgtgatgtcattaaatcttctaaagggcaggtttctgcttgtggtaaattgcaagctggagctcttcaaaatggacttaaggttcgggttatgccttcgggagaattagggactgtccggtctttagaacgtgacggctctcagtcatgctcaactgccacagctggtgacaatgtggctgttactctacaagggattgatgatcgtcatgtgatggcaggaggcgtgctatgtgaccctgatgttccagttgcatttgcgaaacatttggaattgaatgtgcaacttttggacggggcaaagcctatgttggttggctctcagctggagtttcacatacaccacgcaaaggaggcagcaagagtcgtgaaaatagcttcattacttgatccgaagactcttaaagtggcgaaaaggtctcctcgctgtcttctcgcaaagcaggtagctgttatagaggtagttctgcaaggaccagtttgtgtggtggagtactccatgtgtagagctctagggaacgtttctttgagagcgttaggaaacactgtggccctcggcaaggtaacacgaataatcgagaagcagaagtag

Protein Analysis

431

Amino Acids

46.6

Weight (kDa)

8.95

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 823
Acc36I ACCTGC 2 cut(s) 724, 1138
AccI GTMKAC 1 cut(s) 64
AciI CCGC 1 cut(s) 627
AclI AACGTT 1 cut(s) 1224
AclWI GGATC 1 cut(s) 1088
AcoI YGGCCR 1 cut(s) 268
AcsI RAATTY 1 cut(s) 535
AcyI GRCGYC 1 cut(s) 417
AdeI CACNNNGTG 1 cut(s) 350
AfaI GTAC 2 cut(s) 327, 1199
AfiI CCNNNNNNNGG 2 cut(s) 1054, 1264
AflII CTTAAG 1 cut(s) 782
AflIII ACRYGT 1 cut(s) 31
AgsI TTSAA 4 cut(s) 359, 662, 773, 982
AjnI CCWGG 1 cut(s) 265
AjuI GAANNNNNNNTTGG 2 cut(s) 566, 598
AloI GAACNNNNNNTCC 4 cut(s) 281, 313, 771, 803
Alw21I GWGCWC 3 cut(s) 393, 769, 1216
Alw26I GTCTC 2 cut(s) 270, 1128
AlwI GGATC 1 cut(s) 1088
AoxI GGCC 2 cut(s) 268, 1254
ApeKI GCWGC 2 cut(s) 320, 1061
ApoI RAATTY 1 cut(s) 535
ArsI GACNNNNNNTTYG 4 cut(s) 662, 694, 771, 803
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 1178, 1255
AsuHPI GGTGA 1 cut(s) 884
AsuII TTCGAA 1 cut(s) 531
AvaII GGWCC 1 cut(s) 1178
BalI TGGCCA 1 cut(s) 270
BanII GRGCYC 2 cut(s) 769, 1216
BbsI GAAGAC 2 cut(s) 1106, 1127
Bbv12I GWGCWC 3 cut(s) 393, 769, 1216
BbvI GCAGC 2 cut(s) 307, 1073
BccI CCATC 3 cut(s) 332, 442, 913
BceAI ACGGC 1 cut(s) 856
BciT130I CCWGG 1 cut(s) 267
BcoDI GTCTC 2 cut(s) 270, 1128
BfaI CTAG 2 cut(s) 500, 1217
BfmI CTRYAG 1 cut(s) 321
BfrI CTTAAG 1 cut(s) 782
BfuAI ACCTGC 2 cut(s) 724, 1138
BisI GCNGC 2 cut(s) 321, 1062
BlsI GCNGC 2 cut(s) 322, 1063
BmcAI AGTACT 2 cut(s) 327, 1199
Bme1390I CCNGG 1 cut(s) 267
Bme18I GGWCC 1 cut(s) 1178
BmgT120I GGNCC 2 cut(s) 1178, 1255
BmiI GGNNCC 1 cut(s) 555
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 2 cut(s) 307, 634
BpiI GAAGAC 2 cut(s) 1106, 1127
BpmI CTGGAG 2 cut(s) 783, 1052
Bpu14I TTCGAA 1 cut(s) 531
BsaHI GRCGYC 1 cut(s) 417
BsaI GGTCTC 1 cut(s) 1128
BsaJI CCNNGG 3 cut(s) 468, 567, 1258
BsaWI WCCGGW 1 cut(s) 822
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 2 cut(s) 1054, 1264
Bse118I RCCGGY 1 cut(s) 362
Bse1I ACTGG 2 cut(s) 953, 1181
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 3 cut(s) 468, 567, 1258
BseGI GGATG 3 cut(s) 175, 457, 649
BseLI CCNNNNNNNGG 2 cut(s) 1054, 1264
BseMII CTCAG 3 cut(s) 672, 860, 1040
BseNI ACTGG 2 cut(s) 953, 1181
BseRI GAGGAG 1 cut(s) 1116
BseXI GCAGC 2 cut(s) 307, 1073
BshFI GGCC 2 cut(s) 270, 1256
BsiHKAI GWGCWC 3 cut(s) 393, 769, 1216
BsiSI CCGG 3 cut(s) 300, 363, 823
BslFI GGGAC 2 cut(s) 269, 829
BslI CCNNNNNNNGG 2 cut(s) 1054, 1264
BsmAI GTCTC 2 cut(s) 270, 1128
BsmFI GGGAC 2 cut(s) 269, 829
BsnI GGCC 2 cut(s) 270, 1256
Bso31I GGTCTC 1 cut(s) 1128
Bsp119I TTCGAA 1 cut(s) 531
Bsp1286I GDGCHC 3 cut(s) 393, 769, 1216
Bsp143I GATC 4 cut(s) 294, 399, 907, 1093
Bsp19I CCATGG 1 cut(s) 567
BspACI CCGC 1 cut(s) 627
BspANI GGCC 2 cut(s) 270, 1256
BspCNI CTCAG 3 cut(s) 673, 859, 1039
BspLI GGNNCC 1 cut(s) 555
BspMAI CTGCAG 1 cut(s) 325
BspMI ACCTGC 2 cut(s) 724, 1138
BspPI GGATC 1 cut(s) 1088
BspQI GCTCTTC 1 cut(s) 774
BspT104I TTCGAA 1 cut(s) 531
BspTI CTTAAG 1 cut(s) 782
BspTNI GGTCTC 1 cut(s) 1128
BsrFI RCCGGY 1 cut(s) 362
BsrI ACTGG 2 cut(s) 953, 1181
BssAI RCCGGY 1 cut(s) 362
BssECI CCNNGG 3 cut(s) 468, 567, 1258
BssMI GATC 4 cut(s) 294, 399, 907, 1093
BssNI GRCGYC 1 cut(s) 417
BssT1I CCWWGG 2 cut(s) 468, 567
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 3 cut(s) 608, 820, 1252
Bst6I CTCTTC 2 cut(s) 665, 774
BstACI GRCGYC 1 cut(s) 417
BstAFI CTTAAG 1 cut(s) 782
BstBI TTCGAA 1 cut(s) 531
BstC8I GCNNGC 3 cut(s) 393, 759, 932
BstDEI CTNAG 4 cut(s) 384, 681, 846, 1026
BstDSI CCRYGG 1 cut(s) 567
BstENI CCTNNNNNAGG 1 cut(s) 1262
BstF5I GGATG 3 cut(s) 175, 457, 649
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 4 cut(s) 297, 402, 910, 1096
BstMAI GTCTC 2 cut(s) 270, 1128
BstMBI GATC 4 cut(s) 294, 399, 907, 1093
BstMWI GCNNNNNNNGC 5 cut(s) 311, 320, 359, 633, 1058
BstNI CCWGG 1 cut(s) 267
BstNSI RCATGY 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 265
BstSFI CTRYAG 1 cut(s) 321
BstV1I GCAGC 2 cut(s) 307, 1073
BstV2I GAAGAC 2 cut(s) 1106, 1127
BsuRI GGCC 2 cut(s) 270, 1256
BtgI CCRYGG 1 cut(s) 567
BtsCI GGATG 3 cut(s) 175, 457, 649
BtsIMutI CAGTG 1 cut(s) 1248
BveI ACCTGC 2 cut(s) 724, 1138
Cac8I GCNNGC 3 cut(s) 393, 759, 932
CfoI GCGC 1 cut(s) 305
Cfr10I RCCGGY 1 cut(s) 362
Cfr13I GGNCC 2 cut(s) 1178, 1255
CseI GACGC 1 cut(s) 406
Csp6I GTAC 2 cut(s) 326, 1198
CviAII CATG 8 cut(s) 32, 292, 347, 568, 697, 852, 914, 1204
CviQI GTAC 2 cut(s) 326, 1198
DdeI CTNAG 4 cut(s) 384, 681, 846, 1026
DpnI GATC 4 cut(s) 296, 401, 909, 1095
DpnII GATC 4 cut(s) 294, 399, 907, 1093
DraIII CACNNNGTG 1 cut(s) 350
DrdI GACNNNNNNGTC 1 cut(s) 823
DseDI GACNNNNNNGTC 1 cut(s) 823
EaeI YGGCCR 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 665, 774
EarI CTCTTC 2 cut(s) 665, 774
Ecl136II GAGCTC 2 cut(s) 767, 1214
Eco130I CCWWGG 2 cut(s) 468, 567
Eco24I GRGCYC 2 cut(s) 769, 1216
Eco31I GGTCTC 1 cut(s) 1128
Eco32I GATATC 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 1178
Eco53kI GAGCTC 2 cut(s) 767, 1214
EcoICRI GAGCTC 2 cut(s) 767, 1214
EcoNI CCTNNNNNAGG 1 cut(s) 1262
EcoRII CCWGG 1 cut(s) 265
EcoRV GATATC 1 cut(s) 90
EcoT14I CCWWGG 2 cut(s) 468, 567
EcoT38I GRGCYC 2 cut(s) 769, 1216
ErhI CCWWGG 2 cut(s) 468, 567
FaeI CATG 8 cut(s) 35, 295, 350, 571, 700, 855, 917, 1207
FaqI GGGAC 2 cut(s) 269, 829
FatI CATG 8 cut(s) 31, 291, 346, 567, 696, 851, 913, 1203
FauNDI CATATG 1 cut(s) 154
FblI GTMKAC 1 cut(s) 64
Fnu4HI GCNGC 2 cut(s) 321, 1062
FokI GGATG 3 cut(s) 182, 464, 656
FriOI GRGCYC 2 cut(s) 769, 1216
Fsp4HI GCNGC 2 cut(s) 321, 1062
FspBI CTAG 2 cut(s) 500, 1217
GlaI GCGC 1 cut(s) 304
GluI GCNGC 2 cut(s) 321, 1062
GsuI CTGGAG 2 cut(s) 783, 1052
HaeIII GGCC 2 cut(s) 270, 1256
HapII CCGG 3 cut(s) 300, 363, 823
HgaI GACGC 1 cut(s) 406
HhaI GCGC 1 cut(s) 305
Hin1I GRCGYC 1 cut(s) 417
Hin1II CATG 8 cut(s) 35, 295, 350, 571, 700, 855, 917, 1207
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 9 cut(s) 13, 38, 230, 260, 574, 653, 677, 1068, 1102
HpaI GTTAAC 1 cut(s) 442
HpaII CCGG 3 cut(s) 300, 363, 823
HphI GGTGA 1 cut(s) 884
Hpy166II GTNNAC 3 cut(s) 65, 344, 442
Hpy188I TCNGA 5 cut(s) 579, 601, 669, 682, 1098
Hpy188III TCNNGA 5 cut(s) 42, 286, 804, 1072, 1282
Hpy8I GTNNAC 3 cut(s) 65, 344, 442
HpyAV CCTTC 5 cut(s) 78, 364, 606, 668, 810
HpyCH4III ACNGT 3 cut(s) 608, 820, 1252
HpyCH4IV ACGT 2 cut(s) 835, 1224
HpyF10VI GCNNNNNNNGC 5 cut(s) 311, 320, 359, 633, 1058
HpyF3I CTNAG 4 cut(s) 384, 681, 846, 1026
HpySE526I ACGT 2 cut(s) 835, 1224
Hsp92I GRCGYC 1 cut(s) 417
Hsp92II CATG 8 cut(s) 35, 295, 350, 571, 700, 855, 917, 1207
HspAI GCGC 1 cut(s) 303
KspAI GTTAAC 1 cut(s) 442
Kzo9I GATC 4 cut(s) 294, 399, 907, 1093
LguI GCTCTTC 1 cut(s) 774
LmnI GCTCC 3 cut(s) 388, 598, 764
Lsp1109I GCAGC 2 cut(s) 307, 1073
LweI GCATC 2 cut(s) 307, 634
MaeI CTAG 2 cut(s) 500, 1217
MaeII ACGT 2 cut(s) 835, 1224
MaeIII GTNAC 7 cut(s) 129, 687, 836, 872, 886, 938, 1267
MalI GATC 4 cut(s) 296, 401, 909, 1095
MboI GATC 4 cut(s) 294, 399, 907, 1093
MboII GAAGA 7 cut(s) 194, 531, 682, 714, 761, 1111, 1127
MfeI CAATTG 1 cut(s) 21
MhlI GDGCHC 3 cut(s) 393, 769, 1216
MlsI TGGCCA 1 cut(s) 270
MluCI AATT 5 cut(s) 21, 535, 752, 809, 977
MluNI TGGCCA 1 cut(s) 270
MlyI GAGTC 5 cut(s) 224, 254, 686, 1077, 1096
MmeI TCCRAC 1 cut(s) 7
MnlI CCTC 9 cut(s) 115, 188, 368, 675, 920, 1051, 1137, 1156, 1268
Mox20I TGGCCA 1 cut(s) 270
MscI TGGCCA 1 cut(s) 270
MseI TTAA 4 cut(s) 441, 717, 783, 1107
MslI CAYNNNNRTG 2 cut(s) 111, 157
Msp20I TGGCCA 1 cut(s) 270
MspA1I CMGCKG 2 cut(s) 869, 1030
MspCI CTTAAG 1 cut(s) 782
MspI CCGG 3 cut(s) 300, 363, 823
MspR9I CCNGG 1 cut(s) 267
MunI CAATTG 1 cut(s) 21
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 5 cut(s) 311, 320, 359, 633, 1058
NcoI CCATGG 1 cut(s) 567
NdeI CATATG 1 cut(s) 154
NdeII GATC 4 cut(s) 294, 399, 907, 1093
NlaIII CATG 8 cut(s) 35, 295, 350, 571, 700, 855, 917, 1207
NlaIV GGNNCC 1 cut(s) 555
NmeAIII GCCGAG 1 cut(s) 1239
NmuCI GTSAC 4 cut(s) 129, 836, 872, 938
NspI RCATGY 1 cut(s) 35
NspV TTCGAA 1 cut(s) 531
PciI ACATGT 1 cut(s) 31
PciSI GCTCTTC 1 cut(s) 774
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PfeI GAWTC 4 cut(s) 13, 38, 574, 653
PflFI GACNNNGTC 1 cut(s) 281
PkrI GCNGC 2 cut(s) 322, 1063
PleI GAGTC 5 cut(s) 224, 254, 685, 1076, 1096
PpsI GAGTC 5 cut(s) 224, 254, 685, 1076, 1096
PscI ACATGT 1 cut(s) 31
Psp124BI GAGCTC 2 cut(s) 769, 1216
Psp1406I AACGTT 1 cut(s) 1224
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 555
PspPI GGNCC 2 cut(s) 1178, 1255
PstI CTGCAG 1 cut(s) 325
PsyI GACNNNGTC 1 cut(s) 281
PvuII CAGCTG 2 cut(s) 869, 1030
RsaI GTAC 2 cut(s) 327, 1199
RsaNI GTAC 2 cut(s) 326, 1198
RseI CAYNNNNRTG 2 cut(s) 111, 157
SacI GAGCTC 2 cut(s) 769, 1216
SapI GCTCTTC 1 cut(s) 774
SaqAI TTAA 4 cut(s) 441, 717, 783, 1107
SatI GCNGC 2 cut(s) 321, 1062
Sau3AI GATC 4 cut(s) 294, 399, 907, 1093
Sau96I GGNCC 2 cut(s) 1178, 1255
ScaI AGTACT 2 cut(s) 327, 1199
SchI GAGTC 5 cut(s) 224, 254, 686, 1077, 1096
ScrFI CCNGG 1 cut(s) 267
SduI GDGCHC 3 cut(s) 393, 769, 1216
SfaNI GCATC 2 cut(s) 307, 634
SfcI CTRYAG 1 cut(s) 321
SfuI TTCGAA 1 cut(s) 531
SinI GGWCC 1 cut(s) 1178
SmiMI CAYNNNNRTG 2 cut(s) 111, 157
SmlI CTYRAG 1 cut(s) 782
SmoI CTYRAG 1 cut(s) 782
Sse9I AATT 5 cut(s) 21, 535, 752, 809, 977
SsiI CCGC 1 cut(s) 627
SspMI CTAG 2 cut(s) 500, 1217
SstI GAGCTC 2 cut(s) 769, 1216
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 2 cut(s) 468, 567
TaaI ACNGT 3 cut(s) 608, 820, 1252
TaiI ACGT 2 cut(s) 838, 1227
TaqI TCGA 4 cut(s) 36, 50, 531, 1281
TasI AATT 5 cut(s) 21, 535, 752, 809, 977
TatI WGTACW 2 cut(s) 325, 1197
TfiI GAWTC 4 cut(s) 13, 38, 574, 653
Tru1I TTAA 4 cut(s) 441, 717, 783, 1107
Tru9I TTAA 4 cut(s) 441, 717, 783, 1107
TscAI CASTG 1 cut(s) 1255
TseFI GTSAC 4 cut(s) 129, 836, 872, 938
TseI GCWGC 2 cut(s) 320, 1061
Tsp45I GTSAC 4 cut(s) 129, 836, 872, 938
TspDTI ATGAA 4 cut(s) 62, 383, 498, 1074
TspRI CASTG 1 cut(s) 1255
Tth111I GACNNNGTC 1 cut(s) 281
Vha464I CTTAAG 1 cut(s) 782
VpaK11BI GGWCC 1 cut(s) 1178
XagI CCTNNNNNAGG 1 cut(s) 1262
XapI RAATTY 1 cut(s) 535
XceI RCATGY 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 64
XspI CTAG 2 cut(s) 500, 1217
ZrmI AGTACT 2 cut(s) 327, 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.