FvH4_2g38840

Protein BASIC PENTACYSTEINE6-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
28031347 .. 28034933
3587 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38840.t1

Sequence Viewer

Length: 1143 bp
ATGAGAAGAGCCCAAAAGCTTGAAAATTCTTCTTCTTCTTCTTCCACCCGACCATCACTCTTTCACGGCGTCTCCTCTTCTTCTTCTTCTCTAATCAGGGTTTCCCCTAGCTATCTGATGGATGATGGTGGACATCGTGAAAATGGAAGACTCAAAGCAGAACAGTATAAAGCAGCTCAGGGTCAGTGGTTGATGCAACATCAACCGCATCAACCATCCATGAAACAGATAATGGCCTTAATGGCCGAGAGAGATGCAGCCATTCAAGAAAGAAATCTGGCCTTCTCTGAGAAAAAGGCTGCCCTTGCAGAGCGAGACATGGCATTTCTGCAGCGAGATGCAGCAATTGCGGAACGAAATAATGCCATAATGGAACGAGACAATGCCATTGCAACACTTCAGTACCGAGAAAACTCCTCCTTAACTAGTGGCAATTTGTCTTCATGTCCACCAGGATGCCAAATTTCACGTGGGATCAAACATATGCACAACCCGCAGCAGCATGTACATCATCTACCCCACATGAATGAAGCTTCTTATGGTACAAGGGAGATGCACACAAACGATTCCTTGCCACTACCACCAGATCCTCCCCCGGCTCCCAAGTCTAGGCAGACCAAACGACCAAAGGAGCCCAAGACGATTCCCCCAATCAAAAAACCGGCAAAATCTCCAAGGAAGGTCAAGAGGGAGAGCGAGGACTTAAACAAGATGACGTTTGATAGATTGCATGAGTGGAAGGGAGGTCAGGAAATGTGCGTTGGTGCTGAAGATCTTAACAAACAGTTAGGTGTGTCAAAGTCTGATTGGAAATGCCAGGACCTGGGGTTGAACCAGGTTGCATACGATGACTCGACCATGCCAGCACCGGTGTGCTCCTGCACTGGTGTTTTGAGGCAGTGCTACAAGTGGGGAAATGGGGGTTGGCAATCCTCGTGTTGCACTACTACGATGTCAATATACCCATTACCGGCAGTGCCCAATAAAAGACATGCAAGAGTAGGTGGCCGTAAGATGAGTGGCAGTGCTTTCAACAAGCTACTTAGTCGACTGGCAGCTGAAGGCCATGATCTGTCGAACCCAGTTGATCTCAAGGACAACTGGGCCAAGCATGGAACAAATCGCTACATTACGATCAAGTAG

Protein Analysis

381

Amino Acids

42.4

Weight (kDa)

9.52

Isoelectric Point (pI)

59.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAGA_bind PF06217 40 - 380 2.4e-116 GAGA binding protein-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 823
AccI GTMKAC 1 cut(s) 1048
AciI CCGC 3 cut(s) 206, 350, 494
AclWI GGATC 2 cut(s) 482, 581
AcoI YGGCCR 2 cut(s) 243, 1006
AcsI RAATTY 2 cut(s) 25, 462
AcuI CTGAAG 3 cut(s) 383, 789, 1080
AcvI CACGTG 1 cut(s) 470
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 3 cut(s) 404, 507, 544
AfiI CCNNNNNNNGG 3 cut(s) 609, 823, 970
AgeI ACCGGT 1 cut(s) 868
AgsI TTSAA 4 cut(s) 23, 266, 832, 1033
AhlI ACTAGT 1 cut(s) 425
AjnI CCWGG 4 cut(s) 451, 816, 822, 834
AjuI GAANNNNNNNTTGG 4 cut(s) 744, 776, 907, 939
AleI CACNNNNGTG 1 cut(s) 871
AluBI AGCT 6 cut(s) 19, 111, 176, 533, 1039, 1058
AluI AGCT 6 cut(s) 19, 111, 176, 533, 1039, 1058
Alw21I GWGCWC 1 cut(s) 878
Alw26I GTCTC 3 cut(s) 76, 309, 372
AlwI GGATC 2 cut(s) 482, 581
AlwNI CAGNNNCTG 1 cut(s) 823
AoxI GGCC 6 cut(s) 234, 243, 279, 1006, 1063, 1104
ApeKI GCWGC 8 cut(s) 173, 257, 299, 331, 341, 496, 499, 1055
ApoI RAATTY 2 cut(s) 25, 462
AsiGI ACCGGT 1 cut(s) 868
AspS9I GGNCC 2 cut(s) 820, 1104
AsuC2I CCSGG 1 cut(s) 596
AvaII GGWCC 1 cut(s) 820
BaeGI GKGCMC 1 cut(s) 981
BaeI ACNNNNGTAYC 2 cut(s) 386, 419
BanII GRGCYC 2 cut(s) 13, 636
BauI CACGAG 1 cut(s) 934
BbrPI CACGTG 1 cut(s) 470
BbsI GAAGAC 2 cut(s) 154, 432
Bbv12I GWGCWC 1 cut(s) 878
BbvI GCAGC 8 cut(s) 185, 269, 286, 343, 353, 508, 511, 1067
BccI CCATC 4 cut(s) 61, 112, 119, 223
BceAI ACGGC 2 cut(s) 82, 993
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciT130I CCWGG 4 cut(s) 453, 818, 824, 836
BcnI CCSGG 1 cut(s) 596
BcoDI GTCTC 3 cut(s) 76, 309, 372
BcuI ACTAGT 1 cut(s) 425
BfaI CTAG 3 cut(s) 108, 426, 609
BfmI CTRYAG 1 cut(s) 329
BglI GCCNNNNNGGC 1 cut(s) 242
BglII AGATCT 1 cut(s) 772
BisI GCNGC 8 cut(s) 174, 258, 300, 332, 342, 497, 500, 1056
BlsI GCNGC 8 cut(s) 175, 259, 301, 333, 343, 498, 501, 1057
Bme1390I CCNGG 5 cut(s) 453, 596, 818, 824, 836
Bme18I GGWCC 1 cut(s) 820
BmgT120I GGNCC 2 cut(s) 820, 1104
BmiI GGNNCC 2 cut(s) 600, 633
BmrFI CCNGG 5 cut(s) 453, 596, 818, 824, 836
BmrI ACTGGG 2 cut(s) 1076, 1111
BmsI GCATC 6 cut(s) 183, 217, 244, 328, 446, 543
BmuI ACTGGG 2 cut(s) 1076, 1111
BpiI GAAGAC 2 cut(s) 154, 432
Bpu10I CCTNAGC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 1076
BpuMI CCSGG 1 cut(s) 596
BsaAI YACGTR 1 cut(s) 470
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 3 cut(s) 594, 674, 823
BsaWI WCCGGW 1 cut(s) 868
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 3 cut(s) 609, 823, 970
Bse118I RCCGGY 3 cut(s) 661, 868, 970
Bse1I ACTGG 4 cut(s) 889, 1056, 1082, 1106
Bse3DI GCAATG 1 cut(s) 387
BseBI CCWGG 4 cut(s) 453, 818, 824, 836
BseDI CCNNGG 3 cut(s) 594, 674, 823
BseGI GGATG 3 cut(s) 127, 215, 461
BseLI CCNNNNNNNGG 3 cut(s) 609, 823, 970
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 2 cut(s) 191, 279
BseNI ACTGG 4 cut(s) 889, 1056, 1082, 1106
BseRI GAGGAG 2 cut(s) 64, 406
BseSI GKGCMC 1 cut(s) 981
BseXI GCAGC 8 cut(s) 185, 269, 286, 343, 353, 508, 511, 1067
BsgI GTGCAG 1 cut(s) 865
BshFI GGCC 6 cut(s) 236, 245, 281, 1008, 1065, 1106
BshTI ACCGGT 1 cut(s) 868
BsiHKAI GWGCWC 1 cut(s) 878
BsiSI CCGG 4 cut(s) 596, 662, 869, 971
BslI CCNNNNNNNGG 3 cut(s) 609, 823, 970
BsmAI GTCTC 3 cut(s) 76, 309, 372
BsmBI CGTCTC 1 cut(s) 76
BsnI GGCC 6 cut(s) 236, 245, 281, 1008, 1065, 1106
Bsp1286I GDGCHC 4 cut(s) 13, 636, 878, 981
Bsp1407I TGTACA 1 cut(s) 505
Bsp143I GATC 6 cut(s) 474, 586, 772, 1069, 1087, 1134
BspACI CCGC 3 cut(s) 206, 350, 494
BspANI GGCC 6 cut(s) 236, 245, 281, 1008, 1065, 1106
BspCNI CTCAG 2 cut(s) 190, 280
BspLI GGNNCC 2 cut(s) 600, 633
BspMAI CTGCAG 1 cut(s) 333
BspPI GGATC 2 cut(s) 482, 581
BsrDI GCAATG 1 cut(s) 387
BsrFI RCCGGY 3 cut(s) 661, 868, 970
BsrGI TGTACA 1 cut(s) 505
BsrI ACTGG 4 cut(s) 889, 1056, 1082, 1106
BssAI RCCGGY 3 cut(s) 661, 868, 970
BssECI CCNNGG 3 cut(s) 594, 674, 823
BssMI GATC 6 cut(s) 474, 586, 772, 1069, 1087, 1134
BssNI GRCGYC 1 cut(s) 69
BssSI CACGAG 1 cut(s) 934
BssT1I CCWWGG 1 cut(s) 674
Bst2BI CACGAG 1 cut(s) 934
Bst2UI CCWGG 4 cut(s) 453, 818, 824, 836
Bst4CI ACNGT 2 cut(s) 165, 786
Bst6I CTCTTC 1 cut(s) 82
BstACI GRCGYC 1 cut(s) 69
BstAPI GCANNNNNTGC 1 cut(s) 347
BstAUI TGTACA 1 cut(s) 505
BstBAI YACGTR 1 cut(s) 470
BstC8I GCNNGC 1 cut(s) 864
BstDEI CTNAG 3 cut(s) 177, 288, 1043
BstF5I GGATG 3 cut(s) 127, 215, 461
BstKTI GATC 6 cut(s) 477, 589, 775, 1072, 1090, 1137
BstMAI GTCTC 3 cut(s) 76, 309, 372
BstMBI GATC 6 cut(s) 474, 586, 772, 1069, 1087, 1134
BstMWI GCNNNNNNNGC 4 cut(s) 242, 305, 347, 493
BstNI CCWGG 4 cut(s) 453, 818, 824, 836
BstNSI RCATGY 2 cut(s) 506, 995
BstSCI CCNGG 5 cut(s) 451, 594, 816, 822, 834
BstSFI CTRYAG 1 cut(s) 329
BstSLI GKGCMC 1 cut(s) 981
BstV1I GCAGC 8 cut(s) 185, 269, 286, 343, 353, 508, 511, 1067
BstV2I GAAGAC 2 cut(s) 154, 432
BstX2I RGATCY 2 cut(s) 586, 772
BstYI RGATCY 2 cut(s) 586, 772
BsuRI GGCC 6 cut(s) 236, 245, 281, 1008, 1065, 1106
BtsCI GGATG 3 cut(s) 127, 215, 461
BtsI GCAGTG 3 cut(s) 905, 981, 1030
BtsIMutI CAGTG 5 cut(s) 191, 882, 905, 981, 1030
Cac8I GCNNGC 1 cut(s) 864
CaiI CAGNNNCTG 1 cut(s) 823
Cfr10I RCCGGY 3 cut(s) 661, 868, 970
Cfr13I GGNCC 2 cut(s) 820, 1104
CseI GACGC 1 cut(s) 58
CsiI ACCWGGT 1 cut(s) 834
Csp6I GTAC 3 cut(s) 403, 506, 543
CspAI ACCGGT 1 cut(s) 868
CviQI GTAC 3 cut(s) 403, 506, 543
DdeI CTNAG 3 cut(s) 177, 288, 1043
DpnI GATC 6 cut(s) 476, 588, 774, 1071, 1089, 1136
DpnII GATC 6 cut(s) 474, 586, 772, 1069, 1087, 1134
EaeI YGGCCR 2 cut(s) 243, 1006
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 674
Eco24I GRGCYC 2 cut(s) 13, 636
Eco47I GGWCC 1 cut(s) 820
Eco57I CTGAAG 3 cut(s) 383, 789, 1080
Eco72I CACGTG 1 cut(s) 470
EcoO109I RGGNCCY 1 cut(s) 820
EcoRII CCWGG 4 cut(s) 451, 816, 822, 834
EcoT14I CCWWGG 1 cut(s) 674
EcoT38I GRGCYC 2 cut(s) 13, 636
ErhI CCWWGG 1 cut(s) 674
Esp3I CGTCTC 1 cut(s) 76
FauI CCCGC 1 cut(s) 501
FauNDI CATATG 1 cut(s) 483
FblI GTMKAC 1 cut(s) 1048
Fnu4HI GCNGC 8 cut(s) 174, 258, 300, 332, 342, 497, 500, 1056
FokI GGATG 3 cut(s) 134, 202, 468
FriOI GRGCYC 2 cut(s) 13, 636
Fsp4HI GCNGC 8 cut(s) 174, 258, 300, 332, 342, 497, 500, 1056
FspBI CTAG 3 cut(s) 108, 426, 609
GluI GCNGC 8 cut(s) 174, 258, 300, 332, 342, 497, 500, 1056
HaeIII GGCC 6 cut(s) 236, 245, 281, 1008, 1065, 1106
HapII CCGG 4 cut(s) 596, 662, 869, 971
HgaI GACGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 69
HincII GTYRAC 1 cut(s) 1049
HindII GTYRAC 1 cut(s) 1049
HindIII AAGCTT 2 cut(s) 17, 531
HinfI GANTC 4 cut(s) 150, 566, 643, 851
HpaII CCGG 4 cut(s) 596, 662, 869, 971
Hpy166II GTNNAC 3 cut(s) 131, 449, 1049
Hpy188I TCNGA 3 cut(s) 117, 289, 805
Hpy188III TCNNGA 4 cut(s) 137, 266, 685, 749
Hpy8I GTNNAC 3 cut(s) 131, 449, 1049
HpyAV CCTTC 4 cut(s) 292, 673, 733, 1055
HpyCH4III ACNGT 2 cut(s) 165, 786
HpyCH4IV ACGT 2 cut(s) 469, 716
HpyF10VI GCNNNNNNNGC 4 cut(s) 242, 305, 347, 493
HpyF3I CTNAG 3 cut(s) 177, 288, 1043
HpySE526I ACGT 2 cut(s) 469, 716
Hsp92I GRCGYC 1 cut(s) 69
Kzo9I GATC 6 cut(s) 474, 586, 772, 1069, 1087, 1134
LmnI GCTCC 3 cut(s) 604, 631, 881
Lsp1109I GCAGC 8 cut(s) 185, 269, 286, 343, 353, 508, 511, 1067
LweI GCATC 6 cut(s) 183, 217, 244, 328, 446, 543
MabI ACCWGGT 1 cut(s) 834
MaeI CTAG 3 cut(s) 108, 426, 609
MaeII ACGT 2 cut(s) 469, 716
MalI GATC 6 cut(s) 476, 588, 774, 1071, 1089, 1136
MboI GATC 6 cut(s) 474, 586, 772, 1069, 1087, 1134
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 2 cut(s) 586, 772
MhlI GDGCHC 4 cut(s) 13, 636, 878, 981
MluCI AATT 4 cut(s) 25, 345, 433, 462
MlyI GAGTC 2 cut(s) 144, 845
MnlI CCTC 8 cut(s) 85, 427, 600, 681, 691, 737, 888, 943
MseI TTAA 4 cut(s) 239, 422, 704, 777
MslI CAYNNNNRTG 3 cut(s) 454, 525, 871
MspA1I CMGCKG 1 cut(s) 1058
MspI CCGG 4 cut(s) 596, 662, 869, 971
MspR9I CCNGG 5 cut(s) 453, 596, 818, 824, 836
MunI CAATTG 1 cut(s) 345
MvaI CCWGG 4 cut(s) 453, 818, 824, 836
MwoI GCNNNNNNNGC 4 cut(s) 242, 305, 347, 493
NciI CCSGG 1 cut(s) 596
NdeI CATATG 1 cut(s) 483
NdeII GATC 6 cut(s) 474, 586, 772, 1069, 1087, 1134
NlaIV GGNNCC 2 cut(s) 600, 633
NmeAIII GCCGAG 1 cut(s) 271
NspI RCATGY 2 cut(s) 506, 995
OliI CACNNNNGTG 1 cut(s) 871
PfeI GAWTC 2 cut(s) 566, 643
PflMI CCANNNNNTGG 1 cut(s) 823
PinAI ACCGGT 1 cut(s) 868
PkrI GCNGC 8 cut(s) 175, 259, 301, 333, 343, 498, 501, 1057
PleI GAGTC 2 cut(s) 144, 845
PmaCI CACGTG 1 cut(s) 470
PmlI CACGTG 1 cut(s) 470
PpsI GAGTC 2 cut(s) 144, 845
Ppu21I YACGTR 1 cut(s) 470
PpuMI RGGWCCY 1 cut(s) 820
Psp5II RGGWCCY 1 cut(s) 820
Psp6I CCWGG 4 cut(s) 451, 816, 822, 834
PspCI CACGTG 1 cut(s) 470
PspGI CCWGG 4 cut(s) 451, 816, 822, 834
PspN4I GGNNCC 2 cut(s) 600, 633
PspPI GGNCC 2 cut(s) 820, 1104
PspPPI RGGWCCY 1 cut(s) 820
PstI CTGCAG 1 cut(s) 333
PstNI CAGNNNCTG 1 cut(s) 823
PsuI RGATCY 2 cut(s) 586, 772
PvuII CAGCTG 1 cut(s) 1058
RsaI GTAC 3 cut(s) 404, 507, 544
RsaNI GTAC 3 cut(s) 403, 506, 543
RseI CAYNNNNRTG 3 cut(s) 454, 525, 871
SalI GTCGAC 1 cut(s) 1047
SaqAI TTAA 4 cut(s) 239, 422, 704, 777
SatI GCNGC 8 cut(s) 174, 258, 300, 332, 342, 497, 500, 1056
Sau3AI GATC 6 cut(s) 474, 586, 772, 1069, 1087, 1134
Sau96I GGNCC 2 cut(s) 820, 1104
SchI GAGTC 2 cut(s) 144, 845
ScrFI CCNGG 5 cut(s) 453, 596, 818, 824, 836
SduI GDGCHC 4 cut(s) 13, 636, 878, 981
SexAI ACCWGGT 1 cut(s) 834
SfaNI GCATC 6 cut(s) 183, 217, 244, 328, 446, 543
SfcI CTRYAG 1 cut(s) 329
SfiI GGCCNNNNNGGCC 1 cut(s) 242
SgrAI CRCCGGYG 1 cut(s) 868
SinI GGWCC 1 cut(s) 820
SmiMI CAYNNNNRTG 3 cut(s) 454, 525, 871
SmlI CTYRAG 1 cut(s) 1091
SmoI CTYRAG 1 cut(s) 1091
SpeI ACTAGT 1 cut(s) 425
Sse9I AATT 4 cut(s) 25, 345, 433, 462
SsiI CCGC 3 cut(s) 206, 350, 494
SspMI CTAG 3 cut(s) 108, 426, 609
StyD4I CCNGG 5 cut(s) 451, 594, 816, 822, 834
StyI CCWWGG 1 cut(s) 674
TaaI ACNGT 2 cut(s) 165, 786
TaiI ACGT 2 cut(s) 472, 719
TaqI TCGA 3 cut(s) 854, 1048, 1076
TasI AATT 4 cut(s) 25, 345, 433, 462
TatI WGTACW 1 cut(s) 505
TfiI GAWTC 2 cut(s) 566, 643
Tru1I TTAA 4 cut(s) 239, 422, 704, 777
Tru9I TTAA 4 cut(s) 239, 422, 704, 777
TscAI CASTG 5 cut(s) 191, 889, 905, 981, 1030
TseI GCWGC 8 cut(s) 173, 257, 299, 331, 341, 496, 499, 1055
TspDTI ATGAA 4 cut(s) 236, 432, 539, 543
TspRI CASTG 5 cut(s) 191, 889, 905, 981, 1030
Van91I CCANNNNNTGG 1 cut(s) 823
VpaK11BI GGWCC 1 cut(s) 820
XapI RAATTY 2 cut(s) 25, 462
XceI RCATGY 2 cut(s) 506, 995
XcmI CCANNNNNNNNNTGG 1 cut(s) 467
XmiI GTMKAC 1 cut(s) 1048
XspI CTAG 3 cut(s) 108, 426, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.