Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006781

Physical Location & Seq

Genomic Coordinates Reverse (-)

893030 .. 895807

Gene Structure 2778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1015400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGATGACGGTGGCCATCGCGAAAATGGAAGGCACAAAGCAGATCAGTATAAAGCAGCTCAGGGTCAGTGGTTGATGCACAATCAGCCATCAATGAAACAGATAATGGCTATAATGGGCGAAAGAGATGCAGCTATTCAAGAAAGAAATTTGGCTTTTTCTGAGAAAAAGGCTGCCCTGGCAGAGCGAGACATGGCATTCCTGCAACGAGACGCAGCAATTGCAGAACGAAATAGTGCGATAATGGAACGAGACAACGCCATTGCAACTCTTCAGTACCGGGATAACTCCTTAAACAGCGGCAATGTATCTTCATGCCCACCAGGTTGCCAAATTTCCCGCGGGGTCAAACATGTGCACCACACGCAGCAGCAGCAGCAGCATGTACATCATATGCCGCACATGAATGAACCTTCTTATGGTTCGAGGGATATGCACACGAGCGATTCCATCACAATGCCACCAGATGCTTCAGTGCCTACAAAGTCACGGCAGCCCAAACGACCAAGGGAGCCCAAGACGGTGCAACCAAATAAGAAACCTTCAAAATCTCCAAGGAAAGTGAAGAGGGAGAGCGAAGACTTAAATAAGATGACATTTGATAAATTACATGACTGGAAGGGTGGCCAGGATATGGGCAGTGGAGGTGATGATCTTAACAAACAGGTGGTTGTGTCAAAGTCTGATTGGAAACGTCAGGACCTGGGGTTGAACCAGGTTGCTTATGATGAGTCGACCATGCCGGCACCCATGTGCTCGTGCACTGGTCTCCTCAGGCAATGCTACAAGTGGGGGAATGGGGGTTGGCAATCCTCATGTTGCACAACTACAATGTCGATGTACCCATTGCCGGCAGTGCCCAACAAAAGACATGCCCGTGTAGGTGGGAGGAAGATGAGTGGGAGCGCCTTCAACAAGCTACTTAGCCGGCTTGCGGCTGAAGGCCATGATCTGTCAAACCCAGTTGATCTCAAGGACCACTGGGCCAAGCATGGAACAAATCGCTACATCACGATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAGA_bind

Protein Analysis

341

Amino Acids

38.16

Weight (kDa)

9.47

Isoelectric Point (pI)

61.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAGA_bind	PF06217	1 - 340	2e-115	GAGA binding protein-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42520 AT5G42520 AT5G42520
fragaria_vesca	FvH4_2g38840
malus_domestica	MD08G1016400.v1.1 MD15G1015400.v1.1
prunus_persica	Prupe.1G369400_v2.0.a1 Prupe.1G369400_v2.0.a1 Prupe.1G369400_v2.0.a1
pyrus_communis	pycom08g01420 pycom15g01310
rosa_chinensis	RchiOBHm_Chr6g0302391
rosa_laevigata	RLG00000011173
rosa_multiflora	Rmu_sc0003633.1_g000037 Rmu_sc0003633.1_g000038 Rmu_sc0040901.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165800
rosa_rugosa	Rorug06G0313800 Rorug06G0313900 Rorug06G0313900 Rorug06G0313900
rosa_samantha	Rh6AG427000 Rh6BG475700 Rh6CG439200 Rh6DG426200
rosa_wichuraiana	Rw6G036940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	745
AccB7I	CCANNNNNTGG	1 cut(s)	634
AccI	GTMKAC	1 cut(s)	734
AccII	CGCG	2 cut(s)	21, 342
AciI	CCGC	5 cut(s)	300, 340, 342, 398, 935
AcoI	YGGCCR	2 cut(s)	13, 625
AcsI	RAATTY	2 cut(s)	148, 333
AcuI	CTGAAG	3 cut(s)	257, 456, 960
AfaI	GTAC	3 cut(s)	278, 387, 842
AfiI	CCNNNNNNNGG	4 cut(s)	419, 634, 850, 934
AflIII	ACRYGT	1 cut(s)	352
AgsI	TTSAA	4 cut(s)	140, 546, 712, 913
AjnI	CCWGG	5 cut(s)	177, 322, 627, 702, 714
AleI	CACNNNNGTG	1 cut(s)	751
AluBI	AGCT	3 cut(s)	59, 134, 919
AluI	AGCT	3 cut(s)	59, 134, 919
Alw21I	GWGCWC	3 cut(s)	360, 758, 764
Alw26I	GTCTC	4 cut(s)	183, 204, 246, 773
Alw44I	GTGCAC	2 cut(s)	356, 760
AlwNI	CAGNNNCTG	1 cut(s)	703
AoxI	GGCC	4 cut(s)	13, 625, 943, 984
ApaLI	GTGCAC	2 cut(s)	356, 760
ApoI	RAATTY	2 cut(s)	148, 333
AspLEI	GCGC	1 cut(s)	908
AspS9I	GGNCC	3 cut(s)	700, 976, 984
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	659
AvaII	GGWCC	2 cut(s)	700, 976
AxyI	CCTNAGG	1 cut(s)	773
BaeGI	GKGCMC	3 cut(s)	360, 764, 861
BalI	TGGCCA	2 cut(s)	15, 627
BanI	GGYRCC	1 cut(s)	745
BanII	GRGCYC	1 cut(s)	516
BauI	CACGAG	2 cut(s)	439, 757
BbsI	GAAGAC	1 cut(s)	585
Bbv12I	GWGCWC	3 cut(s)	360, 758, 764
BccI	CCATC	3 cut(s)	24, 97, 458
BceAI	ACGGC	1 cut(s)	506
BcgI	CGANNNNNNTGC	4 cut(s)	110, 144, 415, 449
BciT130I	CCWGG	5 cut(s)	179, 324, 629, 704, 716
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	4 cut(s)	183, 204, 246, 773
BfoI	RGCGCY	1 cut(s)	909
Bme1390I	CCNGG	6 cut(s)	179, 281, 324, 629, 704, 716
Bme18I	GGWCC	2 cut(s)	700, 976
BmgT120I	GGNCC	3 cut(s)	700, 976, 984
BmiI	GGNNCC	2 cut(s)	513, 747
BmrFI	CCNGG	6 cut(s)	179, 281, 324, 629, 704, 716
BmrI	ACTGGG	2 cut(s)	956, 991
BmsI	GCATC	3 cut(s)	66, 118, 457
BmuI	ACTGGG	2 cut(s)	956, 991
BpiI	GAAGAC	1 cut(s)	585
Bpu10I	CCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	956
BpuMI	CCSGG	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	773
BsaJI	CCNNGG	5 cut(s)	177, 340, 506, 554, 703
Bsc4I	CCNNNNNNNGG	4 cut(s)	419, 634, 850, 934
Bse118I	RCCGGY	3 cut(s)	742, 850, 927
Bse1I	ACTGG	4 cut(s)	620, 769, 962, 986
Bse21I	CCTNAGG	1 cut(s)	773
Bse3DI	GCAATG	4 cut(s)	261, 310, 785, 845
BseBI	CCWGG	5 cut(s)	179, 324, 629, 704, 716
BseDI	CCNNGG	5 cut(s)	177, 340, 506, 554, 703
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	4 cut(s)	419, 634, 850, 934
BseMI	GCAATG	4 cut(s)	261, 310, 785, 845
BseMII	CTCAG	3 cut(s)	74, 153, 787
BseNI	ACTGG	4 cut(s)	620, 769, 962, 986
BseRI	GAGGAG	1 cut(s)	761
BseSI	GKGCMC	3 cut(s)	360, 764, 861
Bsh1236I	CGCG	2 cut(s)	21, 342
BshFI	GGCC	4 cut(s)	15, 627, 945, 986
BshNI	GGYRCC	1 cut(s)	745
BsiHKAI	GWGCWC	3 cut(s)	360, 758, 764
BsiSI	CCGG	4 cut(s)	280, 743, 851, 928
BslI	CCNNNNNNNGG	4 cut(s)	419, 634, 850, 934
BsmAI	GTCTC	4 cut(s)	183, 204, 246, 773
BsmBI	CGTCTC	1 cut(s)	204
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	4 cut(s)	15, 627, 945, 986
Bso31I	GGTCTC	1 cut(s)	773
Bsp1286I	GDGCHC	5 cut(s)	360, 516, 758, 764, 861
Bsp1407I	TGTACA	1 cut(s)	385
Bsp143I	GATC	5 cut(s)	43, 652, 949, 967, 1014
Bsp68I	TCGCGA	1 cut(s)	21
BspACI	CCGC	5 cut(s)	300, 340, 342, 398, 935
BspANI	GGCC	4 cut(s)	15, 627, 945, 986
BspCNI	CTCAG	3 cut(s)	73, 154, 786
BspFNI	CGCG	2 cut(s)	21, 342
BspLI	GGNNCC	2 cut(s)	513, 747
BspT107I	GGYRCC	1 cut(s)	745
BspTNI	GGTCTC	1 cut(s)	773
BsrDI	GCAATG	4 cut(s)	261, 310, 785, 845
BsrFI	RCCGGY	3 cut(s)	742, 850, 927
BsrGI	TGTACA	1 cut(s)	385
BsrI	ACTGG	4 cut(s)	620, 769, 962, 986
BssAI	RCCGGY	3 cut(s)	742, 850, 927
BssECI	CCNNGG	5 cut(s)	177, 340, 506, 554, 703
BssMI	GATC	5 cut(s)	43, 652, 949, 967, 1014
BssSI	CACGAG	2 cut(s)	439, 757
BssT1I	CCWWGG	2 cut(s)	506, 554
Bst2BI	CACGAG	2 cut(s)	439, 757
Bst2UI	CCWGG	5 cut(s)	179, 324, 629, 704, 716
Bst4CI	ACNGT	2 cut(s)	11, 523
Bst6I	CTCTTC	2 cut(s)	276, 560
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstAUI	TGTACA	1 cut(s)	385
BstC8I	GCNNGC	4 cut(s)	744, 852, 929, 933
BstDEI	CTNAG	4 cut(s)	60, 162, 773, 923
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	2 cut(s)	21, 342
BstH2I	RGCGCY	1 cut(s)	909
BstHHI	GCGC	1 cut(s)	908
BstKTI	GATC	5 cut(s)	46, 655, 952, 970, 1017
BstMAI	GTCTC	4 cut(s)	183, 204, 246, 773
BstMBI	GATC	5 cut(s)	43, 652, 949, 967, 1014
BstMWI	GCNNNNNNNGC	8 cut(s)	85, 179, 221, 364, 373, 376, 379, 856
BstNI	CCWGG	5 cut(s)	179, 324, 629, 704, 716
BstNSI	RCATGY	3 cut(s)	356, 386, 875
BstSCI	CCNGG	6 cut(s)	177, 279, 322, 627, 702, 714
BstSLI	GKGCMC	3 cut(s)	360, 764, 861
BstUI	CGCG	2 cut(s)	21, 342
BstV2I	GAAGAC	1 cut(s)	585
Bsu36I	CCTNAGG	1 cut(s)	773
BsuRI	GGCC	4 cut(s)	15, 627, 945, 986
BtgI	CCRYGG	1 cut(s)	340
BtgZI	GCGATG	1 cut(s)	2
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	2 cut(s)	646, 861
BtsIMutI	CAGTG	6 cut(s)	74, 480, 646, 762, 861, 979
BtuMI	TCGCGA	1 cut(s)	21
Cac8I	GCNNGC	4 cut(s)	744, 852, 929, 933
CaiI	CAGNNNCTG	1 cut(s)	703
CfoI	GCGC	1 cut(s)	908
Cfr10I	RCCGGY	3 cut(s)	742, 850, 927
Cfr13I	GGNCC	3 cut(s)	700, 976, 984
Cfr42I	CCGCGG	1 cut(s)	343
CseI	GACGC	1 cut(s)	221
CsiI	ACCWGGT	2 cut(s)	322, 714
Csp6I	GTAC	3 cut(s)	277, 386, 841
CviQI	GTAC	3 cut(s)	277, 386, 841
DdeI	CTNAG	4 cut(s)	60, 162, 773, 923
DpnI	GATC	5 cut(s)	45, 654, 951, 969, 1016
DpnII	GATC	5 cut(s)	43, 652, 949, 967, 1014
EaeI	YGGCCR	2 cut(s)	13, 625
Eam1104I	CTCTTC	2 cut(s)	276, 560
EarI	CTCTTC	2 cut(s)	276, 560
Eco130I	CCWWGG	2 cut(s)	506, 554
Eco24I	GRGCYC	1 cut(s)	516
Eco31I	GGTCTC	1 cut(s)	773
Eco47I	GGWCC	2 cut(s)	700, 976
Eco57I	CTGAAG	3 cut(s)	257, 456, 960
Eco81I	CCTNAGG	1 cut(s)	773
EcoO109I	RGGNCCY	1 cut(s)	700
EcoRII	CCWGG	5 cut(s)	177, 322, 627, 702, 714
EcoT14I	CCWWGG	2 cut(s)	506, 554
EcoT38I	GRGCYC	1 cut(s)	516
ErhI	CCWWGG	2 cut(s)	506, 554
Esp3I	CGTCTC	1 cut(s)	204
FauI	CCCGC	2 cut(s)	335, 347
FauNDI	CATATG	1 cut(s)	393
FblI	GTMKAC	1 cut(s)	734
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	516
GlaI	GCGC	1 cut(s)	907
HaeII	RGCGCY	1 cut(s)	909
HaeIII	GGCC	4 cut(s)	15, 627, 945, 986
HapII	CCGG	4 cut(s)	280, 743, 851, 928
HgaI	GACGC	1 cut(s)	221
HhaI	GCGC	1 cut(s)	908
Hin6I	GCGC	1 cut(s)	906
HinP1I	GCGC	1 cut(s)	906
HincII	GTYRAC	1 cut(s)	735
HindII	GTYRAC	1 cut(s)	735
HinfI	GANTC	2 cut(s)	446, 731
HpaII	CCGG	4 cut(s)	280, 743, 851, 928
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	3 cut(s)	358, 735, 762
Hpy188I	TCNGA	2 cut(s)	163, 685
Hpy188III	TCNNGA	4 cut(s)	20, 140, 698, 1012
Hpy8I	GTNNAC	3 cut(s)	358, 735, 762
HpyAV	CCTTC	6 cut(s)	24, 423, 552, 613, 919, 935
HpyCH4III	ACNGT	2 cut(s)	11, 523
HpyCH4IV	ACGT	1 cut(s)	694
HpyF10VI	GCNNNNNNNGC	8 cut(s)	85, 179, 221, 364, 373, 376, 379, 856
HpyF3I	CTNAG	4 cut(s)	60, 162, 773, 923
HpySE526I	ACGT	1 cut(s)	694
HspAI	GCGC	1 cut(s)	906
KroI	GCCGGC	3 cut(s)	742, 850, 927
KroNI	GCCGGC	3 cut(s)	744, 852, 929
KspI	CCGCGG	1 cut(s)	343
Kzo9I	GATC	5 cut(s)	43, 652, 949, 967, 1014
LmnI	GCTCC	2 cut(s)	511, 903
LweI	GCATC	3 cut(s)	66, 118, 457
MabI	ACCWGGT	2 cut(s)	322, 714
MaeII	ACGT	1 cut(s)	694
MaeIII	GTNAC	1 cut(s)	486
MalI	GATC	5 cut(s)	45, 654, 951, 969, 1016
MboI	GATC	5 cut(s)	43, 652, 949, 967, 1014
MboII	GAAGA	5 cut(s)	263, 303, 577, 590, 904
MfeI	CAATTG	1 cut(s)	219
MhlI	GDGCHC	5 cut(s)	360, 516, 758, 764, 861
MlsI	TGGCCA	2 cut(s)	15, 627
MluCI	AATT	4 cut(s)	148, 219, 333, 605
MluNI	TGGCCA	2 cut(s)	15, 627
MlyI	GAGTC	1 cut(s)	740
MnlI	CCTC	6 cut(s)	420, 561, 638, 782, 823, 882
Mox20I	TGGCCA	2 cut(s)	15, 627
MroNI	GCCGGC	3 cut(s)	742, 850, 927
MscI	TGGCCA	2 cut(s)	15, 627
MseI	TTAA	3 cut(s)	293, 584, 657
MslI	CAYNNNNRTG	4 cut(s)	405, 455, 751, 876
Msp20I	TGGCCA	2 cut(s)	15, 627
MspA1I	CMGCKG	2 cut(s)	300, 342
MspI	CCGG	4 cut(s)	280, 743, 851, 928
MspR9I	CCNGG	6 cut(s)	179, 281, 324, 629, 704, 716
MunI	CAATTG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	197
MvaI	CCWGG	5 cut(s)	179, 324, 629, 704, 716
MvnI	CGCG	2 cut(s)	21, 342
MwoI	GCNNNNNNNGC	8 cut(s)	85, 179, 221, 364, 373, 376, 379, 856
NaeI	GCCGGC	3 cut(s)	744, 852, 929
NciI	CCSGG	1 cut(s)	281
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	5 cut(s)	43, 652, 949, 967, 1014
NgoMIV	GCCGGC	3 cut(s)	742, 850, 927
NlaIV	GGNNCC	2 cut(s)	513, 747
NmuCI	GTSAC	1 cut(s)	486
NruI	TCGCGA	1 cut(s)	21
NspI	RCATGY	3 cut(s)	356, 386, 875
OliI	CACNNNNGTG	1 cut(s)	751
PciI	ACATGT	1 cut(s)	352
PctI	GAATGC	1 cut(s)	197
PdiI	GCCGGC	3 cut(s)	744, 852, 929
PfeI	GAWTC	1 cut(s)	446
PflMI	CCANNNNNTGG	1 cut(s)	634
PleI	GAGTC	1 cut(s)	739
PpsI	GAGTC	1 cut(s)	739
PpuMI	RGGWCCY	1 cut(s)	700
PscI	ACATGT	1 cut(s)	352
Psp5II	RGGWCCY	1 cut(s)	700
Psp6I	CCWGG	5 cut(s)	177, 322, 627, 702, 714
PspGI	CCWGG	5 cut(s)	177, 322, 627, 702, 714
PspN4I	GGNNCC	2 cut(s)	513, 747
PspPI	GGNCC	3 cut(s)	700, 976, 984
PspPPI	RGGWCCY	1 cut(s)	700
PstNI	CAGNNNCTG	1 cut(s)	703
RruI	TCGCGA	1 cut(s)	21
RsaI	GTAC	3 cut(s)	278, 387, 842
RsaNI	GTAC	3 cut(s)	277, 386, 841
RseI	CAYNNNNRTG	4 cut(s)	405, 455, 751, 876
SacII	CCGCGG	1 cut(s)	343
SalI	GTCGAC	1 cut(s)	733
SaqAI	TTAA	3 cut(s)	293, 584, 657
Sau3AI	GATC	5 cut(s)	43, 652, 949, 967, 1014
Sau96I	GGNCC	3 cut(s)	700, 976, 984
SchI	GAGTC	1 cut(s)	740
ScrFI	CCNGG	6 cut(s)	179, 281, 324, 629, 704, 716
SduI	GDGCHC	5 cut(s)	360, 516, 758, 764, 861
SexAI	ACCWGGT	2 cut(s)	322, 714
SfaNI	GCATC	3 cut(s)	66, 118, 457
Sfr303I	CCGCGG	1 cut(s)	343
SgrBI	CCGCGG	1 cut(s)	343
SinI	GGWCC	2 cut(s)	700, 976
SmiMI	CAYNNNNRTG	4 cut(s)	405, 455, 751, 876
SmlI	CTYRAG	1 cut(s)	971
SmoI	CTYRAG	1 cut(s)	971
Sse9I	AATT	4 cut(s)	148, 219, 333, 605
SsiI	CCGC	5 cut(s)	300, 340, 342, 398, 935
StyD4I	CCNGG	6 cut(s)	177, 279, 322, 627, 702, 714
StyI	CCWWGG	2 cut(s)	506, 554
TaaI	ACNGT	2 cut(s)	11, 523
TaiI	ACGT	1 cut(s)	697
TaqI	TCGA	3 cut(s)	425, 734, 836
TasI	AATT	4 cut(s)	148, 219, 333, 605
TatI	WGTACW	1 cut(s)	385
TauI	GCSGC	3 cut(s)	303, 400, 938
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	3 cut(s)	293, 584, 657
Tru9I	TTAA	3 cut(s)	293, 584, 657
TscAI	CASTG	6 cut(s)	74, 480, 646, 769, 861, 986
TseFI	GTSAC	1 cut(s)	486
Tsp45I	GTSAC	1 cut(s)	486
TspDTI	ATGAA	4 cut(s)	110, 303, 419, 423
TspRI	CASTG	6 cut(s)	74, 480, 646, 769, 861, 986
Van91I	CCANNNNNTGG	1 cut(s)	634
VneI	GTGCAC	2 cut(s)	356, 760
VpaK11BI	GGWCC	2 cut(s)	700, 976
XapI	RAATTY	2 cut(s)	148, 333
XceI	RCATGY	3 cut(s)	356, 386, 875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.