Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006781

Physical Location & Seq

Genomic Coordinates Reverse (-)

1101299 .. 1102460

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g01420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGATGACGGTGGCCATCGTGAAAATGGAAGACACAAAGCGGATCAGTATAAAGCAGCTCAGGGTCAGTGGTTGATGCACAATCAGCCATCAATGAAACAGGTAATGGCCATAATGAGCGAAAGAGATGCAGCTATTCAAGAAAGAAATTTGGCCTTTTCCGAGAAAAAGGCTGCCCTTGCAGAGCGAGACATGGCATTCCTGCAACGAGATGCAGCAATTGCAGAACGAAATAGTGCCATAATGGAACGAGACAGCGCCATTGCAACTCTTCACTACCGGGATAACTCCTTAAACAGTGGCAATGGATCTTCATGCCCACCAGGTTGTCAAATTTCACGCGGGGTCAAACATATGCACCACACGCAGCAGCAGCAGCATGTACATCACATGCCGCACATGAATGAACCTACTTATGGTACGAGGGATATGCACACAAGTGATTCCATCACAATGCCACCAGAAACTTCAGTGCCTACAAAGTCACGGCAGCCCAAACGACCAAGGGAGCCCAAGACAACGCAACCAAATAAGAAACCTTCAAAATCTCCAAGGAAGATGAAGAGGGAGAGTGAAGACTTAAATAAGATGACGTTTGATAAATTACATGACTGGAAGGGTGGCCAGGATATGGGCAGTGAAGGTGATGATCTTAACAAACAGGTGGTTGTGTCAAAGTCAGATTGGAAAGTTCAGGACCTGGGGTTGAACCAGGTTGCGTATGATGAGTCAACCATGCCAGCACCCATGTGCTCGTGCACCGGTCTCCTCAGGCAATGCTACAAGTGGGGGAATGGGGGTTGGCAATCCTCATGTTGCACAACTACAATGTCGATGTACCCATTGCCAGCAGTGCCCAACAAAAGACACGCCCGTGTAGGTGGGAGGAAGATGAGTGGGAGTGCCTTCAACAAGCTACTTAGCCGACTTACAGCTGAAGGCCATGATCTCTCGAACCCAGTTGATCTCAAGGACCACTGGGCCAAGCACGGAACAAACCGCTACATCACAATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAGA_bind

Protein Analysis

340

Amino Acids

38.18

Weight (kDa)

9.34

Isoelectric Point (pI)

63.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42520 AT5G42520 AT5G42520
fragaria_vesca	FvH4_2g38840
malus_domestica	MD08G1016400.v1.1 MD15G1015400.v1.1
prunus_persica	Prupe.1G369400_v2.0.a1 Prupe.1G369400_v2.0.a1 Prupe.1G369400_v2.0.a1
pyrus_communis	pycom08g01420 pycom15g01310
rosa_chinensis	RchiOBHm_Chr6g0302391
rosa_laevigata	RLG00000011173
rosa_multiflora	Rmu_sc0003633.1_g000037 Rmu_sc0003633.1_g000038 Rmu_sc0040901.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165800
rosa_rugosa	Rorug06G0313800 Rorug06G0313900 Rorug06G0313900 Rorug06G0313900
rosa_samantha	Rh6AG427000 Rh6BG475700 Rh6CG439200 Rh6DG426200
rosa_wichuraiana	Rw6G036940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	631
AccII	CGCG	1 cut(s)	342
AciI	CCGC	4 cut(s)	41, 342, 395, 1000
AclWI	GGATC	2 cut(s)	51, 316
AcoI	YGGCCR	3 cut(s)	13, 108, 622
AcsI	RAATTY	2 cut(s)	148, 333
AcuI	CTGAAG	2 cut(s)	453, 957
AfaI	GTAC	3 cut(s)	384, 421, 839
AfiI	CCNNNNNNNGG	2 cut(s)	416, 631
AgeI	ACCGGT	1 cut(s)	761
AgsI	TTSAA	4 cut(s)	140, 543, 709, 910
AjnI	CCWGG	4 cut(s)	322, 624, 699, 711
AleI	CACNNNNGTG	3 cut(s)	438, 748, 873
AluBI	AGCT	4 cut(s)	59, 134, 916, 935
AluI	AGCT	4 cut(s)	59, 134, 916, 935
Alw21I	GWGCWC	2 cut(s)	755, 761
Alw26I	GTCTC	3 cut(s)	183, 246, 770
Alw44I	GTGCAC	1 cut(s)	757
AlwI	GGATC	2 cut(s)	51, 316
AlwNI	CAGNNNCTG	1 cut(s)	700
AoxI	GGCC	6 cut(s)	13, 108, 153, 622, 940, 981
ApaLI	GTGCAC	1 cut(s)	757
ApeKI	GCWGC	9 cut(s)	56, 131, 173, 215, 367, 370, 373, 376, 490
ApoI	RAATTY	2 cut(s)	148, 333
AsiGI	ACCGGT	1 cut(s)	761
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	3 cut(s)	697, 973, 981
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	656
AvaII	GGWCC	2 cut(s)	697, 973
AxyI	CCTNAGG	1 cut(s)	770
BaeGI	GKGCMC	2 cut(s)	761, 858
BalI	TGGCCA	3 cut(s)	15, 110, 624
BanII	GRGCYC	1 cut(s)	513
BauI	CACGAG	1 cut(s)	754
BbsI	GAAGAC	2 cut(s)	37, 582
Bbv12I	GWGCWC	2 cut(s)	755, 761
BbvI	GCAGC	9 cut(s)	68, 143, 160, 227, 379, 382, 385, 388, 502
BccI	CCATC	3 cut(s)	24, 97, 455
BceAI	ACGGC	1 cut(s)	503
BcgI	CGANNNNNNTGC	4 cut(s)	110, 144, 412, 446
BciT130I	CCWGG	4 cut(s)	324, 626, 701, 713
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	3 cut(s)	183, 246, 770
BfoI	RGCGCY	1 cut(s)	261
Bme1390I	CCNGG	5 cut(s)	281, 324, 626, 701, 713
Bme18I	GGWCC	2 cut(s)	697, 973
BmgT120I	GGNCC	3 cut(s)	697, 973, 981
BmiI	GGNNCC	1 cut(s)	510
BmrFI	CCNGG	5 cut(s)	281, 324, 626, 701, 713
BmrI	ACTGGG	2 cut(s)	953, 988
BmsI	GCATC	3 cut(s)	66, 118, 202
BmuI	ACTGGG	2 cut(s)	953, 988
BpiI	GAAGAC	2 cut(s)	37, 582
Bpu10I	CCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	953
BpuMI	CCSGG	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	770
BsaJI	CCNNGG	3 cut(s)	503, 551, 700
BsaWI	WCCGGW	1 cut(s)	761
Bsc4I	CCNNNNNNNGG	2 cut(s)	416, 631
Bse118I	RCCGGY	1 cut(s)	761
Bse1I	ACTGG	3 cut(s)	617, 959, 983
Bse21I	CCTNAGG	1 cut(s)	770
Bse3DI	GCAATG	4 cut(s)	261, 310, 782, 842
BseBI	CCWGG	4 cut(s)	324, 626, 701, 713
BseDI	CCNNGG	3 cut(s)	503, 551, 700
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	416, 631
BseMI	GCAATG	4 cut(s)	261, 310, 782, 842
BseMII	CTCAG	2 cut(s)	74, 784
BseNI	ACTGG	3 cut(s)	617, 959, 983
BseRI	GAGGAG	1 cut(s)	758
BseSI	GKGCMC	2 cut(s)	761, 858
BseXI	GCAGC	9 cut(s)	68, 143, 160, 227, 379, 382, 385, 388, 502
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	6 cut(s)	15, 110, 155, 624, 942, 983
BshTI	ACCGGT	1 cut(s)	761
BsiHKAI	GWGCWC	2 cut(s)	755, 761
BsiSI	CCGG	2 cut(s)	280, 762
BslI	CCNNNNNNNGG	2 cut(s)	416, 631
BsmAI	GTCTC	3 cut(s)	183, 246, 770
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	6 cut(s)	15, 110, 155, 624, 942, 983
Bso31I	GGTCTC	1 cut(s)	770
Bsp1286I	GDGCHC	4 cut(s)	513, 755, 761, 858
Bsp1407I	TGTACA	1 cut(s)	382
Bsp143I	GATC	5 cut(s)	43, 308, 649, 946, 964
BspACI	CCGC	4 cut(s)	41, 342, 395, 1000
BspANI	GGCC	6 cut(s)	15, 110, 155, 624, 942, 983
BspCNI	CTCAG	2 cut(s)	73, 783
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	510
BspPI	GGATC	2 cut(s)	51, 316
BspTNI	GGTCTC	1 cut(s)	770
BsrDI	GCAATG	4 cut(s)	261, 310, 782, 842
BsrFI	RCCGGY	1 cut(s)	761
BsrGI	TGTACA	1 cut(s)	382
BsrI	ACTGG	3 cut(s)	617, 959, 983
BssAI	RCCGGY	1 cut(s)	761
BssECI	CCNNGG	3 cut(s)	503, 551, 700
BssMI	GATC	5 cut(s)	43, 308, 649, 946, 964
BssSI	CACGAG	1 cut(s)	754
BssT1I	CCWWGG	2 cut(s)	503, 551
Bst2BI	CACGAG	1 cut(s)	754
Bst2UI	CCWGG	4 cut(s)	324, 626, 701, 713
Bst4CI	ACNGT	2 cut(s)	11, 299
Bst6I	CTCTTC	2 cut(s)	276, 557
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstAUI	TGTACA	1 cut(s)	382
BstC8I	GCNNGC	2 cut(s)	741, 849
BstDEI	CTNAG	3 cut(s)	60, 770, 920
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	342
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	5 cut(s)	46, 311, 652, 949, 967
BstMAI	GTCTC	3 cut(s)	183, 246, 770
BstMBI	GATC	5 cut(s)	43, 308, 649, 946, 964
BstMWI	GCNNNNNNNGC	7 cut(s)	85, 179, 221, 364, 373, 376, 853
BstNI	CCWGG	4 cut(s)	324, 626, 701, 713
BstNSI	RCATGY	2 cut(s)	383, 394
BstSCI	CCNGG	5 cut(s)	279, 322, 624, 699, 711
BstSLI	GKGCMC	2 cut(s)	761, 858
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	9 cut(s)	68, 143, 160, 227, 379, 382, 385, 388, 502
BstV2I	GAAGAC	2 cut(s)	37, 582
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
Bsu36I	CCTNAGG	1 cut(s)	770
BsuRI	GGCC	6 cut(s)	15, 110, 155, 624, 942, 983
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	2 cut(s)	643, 858
BtsIMutI	CAGTG	6 cut(s)	74, 304, 477, 643, 858, 976
Cac8I	GCNNGC	2 cut(s)	741, 849
CaiI	CAGNNNCTG	1 cut(s)	700
CfoI	GCGC	1 cut(s)	260
Cfr10I	RCCGGY	1 cut(s)	761
Cfr13I	GGNCC	3 cut(s)	697, 973, 981
CsiI	ACCWGGT	2 cut(s)	322, 711
Csp6I	GTAC	3 cut(s)	383, 420, 838
CspAI	ACCGGT	1 cut(s)	761
CviQI	GTAC	3 cut(s)	383, 420, 838
DdeI	CTNAG	3 cut(s)	60, 770, 920
DpnI	GATC	5 cut(s)	45, 310, 651, 948, 966
DpnII	GATC	5 cut(s)	43, 308, 649, 946, 964
EaeI	YGGCCR	3 cut(s)	13, 108, 622
Eam1104I	CTCTTC	2 cut(s)	276, 557
EarI	CTCTTC	2 cut(s)	276, 557
Eco130I	CCWWGG	2 cut(s)	503, 551
Eco24I	GRGCYC	1 cut(s)	513
Eco31I	GGTCTC	1 cut(s)	770
Eco47I	GGWCC	2 cut(s)	697, 973
Eco57I	CTGAAG	2 cut(s)	453, 957
Eco81I	CCTNAGG	1 cut(s)	770
EcoO109I	RGGNCCY	1 cut(s)	697
EcoRII	CCWGG	4 cut(s)	322, 624, 699, 711
EcoT14I	CCWWGG	2 cut(s)	503, 551
EcoT38I	GRGCYC	1 cut(s)	513
ErhI	CCWWGG	2 cut(s)	503, 551
FauI	CCCGC	1 cut(s)	335
FauNDI	CATATG	1 cut(s)	354
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	513
GlaI	GCGC	1 cut(s)	259
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	6 cut(s)	15, 110, 155, 624, 942, 983
HapII	CCGG	2 cut(s)	280, 762
HhaI	GCGC	1 cut(s)	260
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HinfI	GANTC	2 cut(s)	443, 728
HpaII	CCGG	2 cut(s)	280, 762
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	2 cut(s)	732, 759
Hpy188I	TCNGA	2 cut(s)	163, 682
Hpy188III	TCNNGA	4 cut(s)	20, 140, 695, 952
Hpy8I	GTNNAC	2 cut(s)	732, 759
HpyAV	CCTTC	5 cut(s)	549, 610, 635, 916, 932
HpyCH4III	ACNGT	2 cut(s)	11, 299
HpyCH4IV	ACGT	1 cut(s)	593
HpyF10VI	GCNNNNNNNGC	7 cut(s)	85, 179, 221, 364, 373, 376, 853
HpyF3I	CTNAG	3 cut(s)	60, 770, 920
HpySE526I	ACGT	1 cut(s)	593
HspAI	GCGC	1 cut(s)	258
Kzo9I	GATC	5 cut(s)	43, 308, 649, 946, 964
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	9 cut(s)	68, 143, 160, 227, 379, 382, 385, 388, 502
LweI	GCATC	3 cut(s)	66, 118, 202
MabI	ACCWGGT	2 cut(s)	322, 711
MaeII	ACGT	1 cut(s)	593
MaeIII	GTNAC	1 cut(s)	483
MalI	GATC	5 cut(s)	45, 310, 651, 948, 966
MboI	GATC	5 cut(s)	43, 308, 649, 946, 964
MboII	GAAGA	7 cut(s)	42, 263, 303, 568, 574, 587, 901
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	1 cut(s)	308
MhlI	GDGCHC	4 cut(s)	513, 755, 761, 858
MlsI	TGGCCA	3 cut(s)	15, 110, 624
MluCI	AATT	4 cut(s)	148, 219, 333, 602
MluNI	TGGCCA	3 cut(s)	15, 110, 624
MlyI	GAGTC	1 cut(s)	737
MnlI	CCTC	5 cut(s)	417, 558, 779, 820, 879
Mox20I	TGGCCA	3 cut(s)	15, 110, 624
MscI	TGGCCA	3 cut(s)	15, 110, 624
MseI	TTAA	3 cut(s)	293, 581, 654
MslI	CAYNNNNRTG	5 cut(s)	402, 438, 452, 748, 873
Msp20I	TGGCCA	3 cut(s)	15, 110, 624
MspA1I	CMGCKG	1 cut(s)	935
MspI	CCGG	2 cut(s)	280, 762
MspR9I	CCNGG	5 cut(s)	281, 324, 626, 701, 713
MunI	CAATTG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	197
MvaI	CCWGG	4 cut(s)	324, 626, 701, 713
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	7 cut(s)	85, 179, 221, 364, 373, 376, 853
NciI	CCSGG	1 cut(s)	281
NdeI	CATATG	1 cut(s)	354
NdeII	GATC	5 cut(s)	43, 308, 649, 946, 964
NlaIV	GGNNCC	1 cut(s)	510
NmuCI	GTSAC	1 cut(s)	483
NspI	RCATGY	2 cut(s)	383, 394
OliI	CACNNNNGTG	3 cut(s)	438, 748, 873
PctI	GAATGC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	443
PflMI	CCANNNNNTGG	1 cut(s)	631
PinAI	ACCGGT	1 cut(s)	761
PleI	GAGTC	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	736
PpuMI	RGGWCCY	1 cut(s)	697
Psp5II	RGGWCCY	1 cut(s)	697
Psp6I	CCWGG	4 cut(s)	322, 624, 699, 711
PspGI	CCWGG	4 cut(s)	322, 624, 699, 711
PspN4I	GGNNCC	1 cut(s)	510
PspPI	GGNCC	3 cut(s)	697, 973, 981
PspPPI	RGGWCCY	1 cut(s)	697
PstNI	CAGNNNCTG	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	935
RsaI	GTAC	3 cut(s)	384, 421, 839
RsaNI	GTAC	3 cut(s)	383, 420, 838
RseI	CAYNNNNRTG	5 cut(s)	402, 438, 452, 748, 873
SaqAI	TTAA	3 cut(s)	293, 581, 654
Sau3AI	GATC	5 cut(s)	43, 308, 649, 946, 964
Sau96I	GGNCC	3 cut(s)	697, 973, 981
SchI	GAGTC	1 cut(s)	737
ScrFI	CCNGG	5 cut(s)	281, 324, 626, 701, 713
SduI	GDGCHC	4 cut(s)	513, 755, 761, 858
SexAI	ACCWGGT	2 cut(s)	322, 711
SfaNI	GCATC	3 cut(s)	66, 118, 202
SinI	GGWCC	2 cut(s)	697, 973
SmiMI	CAYNNNNRTG	5 cut(s)	402, 438, 452, 748, 873
SmlI	CTYRAG	1 cut(s)	968
SmoI	CTYRAG	1 cut(s)	968
Sse9I	AATT	4 cut(s)	148, 219, 333, 602
SsiI	CCGC	4 cut(s)	41, 342, 395, 1000
StyD4I	CCNGG	5 cut(s)	279, 322, 624, 699, 711
StyI	CCWWGG	2 cut(s)	503, 551
TaaI	ACNGT	2 cut(s)	11, 299
TaiI	ACGT	1 cut(s)	596
TaqI	TCGA	2 cut(s)	833, 953
TasI	AATT	4 cut(s)	148, 219, 333, 602
TatI	WGTACW	1 cut(s)	382
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	3 cut(s)	293, 581, 654
Tru9I	TTAA	3 cut(s)	293, 581, 654
TscAI	CASTG	6 cut(s)	74, 304, 477, 643, 858, 983
TseFI	GTSAC	1 cut(s)	483
TseI	GCWGC	9 cut(s)	56, 131, 173, 215, 367, 370, 373, 376, 490
Tsp45I	GTSAC	1 cut(s)	483
TspDTI	ATGAA	5 cut(s)	110, 303, 416, 420, 575
TspGWI	ACGGA	1 cut(s)	1005
TspRI	CASTG	6 cut(s)	74, 304, 477, 643, 858, 983
Van91I	CCANNNNNTGG	1 cut(s)	631
VneI	GTGCAC	1 cut(s)	757
VpaK11BI	GGWCC	2 cut(s)	697, 973
XapI	RAATTY	2 cut(s)	148, 333
XceI	RCATGY	2 cut(s)	383, 394
XcmI	CCANNNNNNNNNTGG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.