Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006781

Physical Location & Seq

Genomic Coordinates Reverse (-)

33743529 .. 33746308

Gene Structure 2780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G369400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGATGATAGTGGGCATCGTGAAAATGGAAGAATCAAAGCAGAGCAGTATAAAGCAGCTCAGGGTCAGTGGTTGATGCAACATCAGCCATCAATGAAACAGATAATGGCCATAATGGGTGAAAGAGATGCAGCTATTCAAGAAAGAAATTTGGCATTTTCTGAGAAAAAAGCTGCCCTTCAAGAGCGAGACATGGCATTCCTGCAGCGAGATGCCGCAATTGCAGAACGGAATACTGCCATTATGGAACGAGACAATGCCATTGCAAATCTTCAGTACCGGGAAAACTCCTTGAATAATGGTAATGTATCTTCTTGTCCACCAGGATGCCAAATTTCACGTGGGGTCAAACATATGCACCACCCGCAGCAGCATGTGCATCATCCTCCTCACATGAATGAAGCTTCTTATGGTACAAGGGATATGCACACGAGCGATTCCGTCCCAATGCCACCTGATGCTTCTTTGCCTACAAAGTCACGACAGCCCAAACGACCTAGGGAACCCAAGACAATGGCACCAAATAAGAAAACCTCAAAATCTCCCAGGAAAGTGAAGAGGGAGAGTGAGGATTTAAATAAGATGACATTTGATAAATTACACGAGTGGAAGGGCAGTCAGGATATGGGTGGCGGAGGTGATGATGTTAACAAACACTTGGTTGTGTCAAAGTCTGATTGGAAATGTCAGGACCTGGGATTGAATCAGGTTGCATATGATGAGTCAACCATGCCAGCACCGGTGTGCTCATGCACCGGTATCCTGAGGCAGTGCTACAAGTGGGGGAATGGGGGTTGGCAATCCTCATGTTGCACTACTACAATGTCAATGTACCCATTGCCGGCAGTGCCCAATAAGCGACATGCCCGAGTAGGTGGCCGAAAGATGAGCGGCAGTGCCTTCAACAAGCTACTTAGCCGGCTTGCAGCTGAAGGCCATGATCTGTCAAACCCAGTTGATCTCAAGGATAACTGGGCCAAGCATGGAACAAATCGCTACATCACAATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAGA_bind

Protein Analysis

338

Amino Acids

37.81

Weight (kDa)

9.36

Isoelectric Point (pI)

57.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42520 AT5G42520 AT5G42520
fragaria_vesca	FvH4_2g38840
malus_domestica	MD08G1016400.v1.1 MD15G1015400.v1.1
prunus_persica	Prupe.1G369400_v2.0.a1 Prupe.1G369400_v2.0.a1 Prupe.1G369400_v2.0.a1
pyrus_communis	pycom08g01420 pycom15g01310
rosa_chinensis	RchiOBHm_Chr6g0302391
rosa_laevigata	RLG00000011173
rosa_multiflora	Rmu_sc0003633.1_g000037 Rmu_sc0003633.1_g000038 Rmu_sc0040901.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165800
rosa_rugosa	Rorug06G0313800 Rorug06G0313900 Rorug06G0313900 Rorug06G0313900
rosa_samantha	Rh6AG427000 Rh6BG475700 Rh6CG439200 Rh6DG426200
rosa_wichuraiana	Rw6G036940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	517
AccBSI	CCGCTC	1 cut(s)	891
AciI	CCGC	4 cut(s)	216, 365, 633, 891
AcoI	YGGCCR	2 cut(s)	108, 877
AcsI	RAATTY	2 cut(s)	148, 333
AcuI	CTGAAG	2 cut(s)	257, 951
AcvI	CACGTG	1 cut(s)	341
AfaI	GTAC	3 cut(s)	278, 415, 833
AfiI	CCNNNNNNNGG	1 cut(s)	841
AgeI	ACCGGT	2 cut(s)	739, 755
AgsI	TTSAA	5 cut(s)	140, 182, 295, 703, 904
AjnI	CCWGG	3 cut(s)	322, 545, 693
AleI	CACNNNNGTG	1 cut(s)	742
AluBI	AGCT	6 cut(s)	59, 134, 173, 404, 910, 929
AluI	AGCT	6 cut(s)	59, 134, 173, 404, 910, 929
Alw21I	GWGCWC	1 cut(s)	749
Alw26I	GTCTC	2 cut(s)	183, 246
AlwNI	CAGNNNCTG	1 cut(s)	694
Ama87I	CYCGRG	1 cut(s)	867
AoxI	GGCC	4 cut(s)	108, 877, 934, 975
ApeKI	GCWGC	7 cut(s)	56, 131, 173, 205, 367, 370, 926
ApoI	RAATTY	2 cut(s)	148, 333
AsiGI	ACCGGT	2 cut(s)	739, 755
AspA2I	CCTAGG	1 cut(s)	497
AspS9I	GGNCC	2 cut(s)	691, 975
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	2 cut(s)	131, 650
AvaI	CYCGRG	1 cut(s)	867
AvaII	GGWCC	1 cut(s)	691
AvrII	CCTAGG	1 cut(s)	497
AxyI	CCTNAGG	1 cut(s)	764
BaeGI	GKGCMC	1 cut(s)	852
BalI	TGGCCA	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	517
BarI	GAAGNNNNNNTAC	2 cut(s)	295, 327
BauI	CACGAG	2 cut(s)	430, 602
BbrPI	CACGTG	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	749
BbvI	GCAGC	7 cut(s)	68, 143, 160, 217, 379, 382, 938
BccI	CCATC	1 cut(s)	97
BciT130I	CCWGG	3 cut(s)	324, 547, 695
BciVI	GTATCC	1 cut(s)	770
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	2 cut(s)	183, 246
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	770
BisI	GCNGC	9 cut(s)	57, 132, 174, 206, 216, 368, 371, 892, 927
BlnI	CCTAGG	1 cut(s)	497
BlsI	GCNGC	9 cut(s)	58, 133, 175, 207, 217, 369, 372, 893, 928
Bme1390I	CCNGG	4 cut(s)	281, 324, 547, 695
Bme18I	GGWCC	1 cut(s)	691
BmeT110I	CYCGRG	1 cut(s)	867
BmgT120I	GGNCC	2 cut(s)	691, 975
BmiI	GGNNCC	2 cut(s)	504, 519
BmrFI	CCNGG	4 cut(s)	281, 324, 547, 695
BmrI	ACTGGG	2 cut(s)	947, 982
BmsI	GCATC	7 cut(s)	25, 66, 118, 202, 317, 388, 448
BmuI	ACTGGG	2 cut(s)	947, 982
Bpu10I	CCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	947
BpuMI	CCSGG	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	341
BsaJI	CCNNGG	3 cut(s)	497, 545, 694
BsaWI	WCCGGW	2 cut(s)	739, 755
Bsc4I	CCNNNNNNNGG	1 cut(s)	841
Bse118I	RCCGGY	4 cut(s)	739, 755, 841, 918
Bse1I	ACTGG	2 cut(s)	953, 977
Bse21I	CCTNAGG	1 cut(s)	764
Bse3DI	GCAATG	2 cut(s)	261, 836
BseBI	CCWGG	3 cut(s)	324, 547, 695
BseDI	CCNNGG	3 cut(s)	497, 545, 694
BseGI	GGATG	3 cut(s)	10, 332, 382
BseLI	CCNNNNNNNGG	1 cut(s)	841
BseMI	GCAATG	2 cut(s)	261, 836
BseMII	CTCAG	3 cut(s)	74, 153, 755
BseNI	ACTGG	2 cut(s)	953, 977
BseRI	GAGGAG	1 cut(s)	378
BseSI	GKGCMC	1 cut(s)	852
BseXI	GCAGC	7 cut(s)	68, 143, 160, 217, 379, 382, 938
BshFI	GGCC	4 cut(s)	110, 879, 936, 977
BshNI	GGYRCC	1 cut(s)	517
BshTI	ACCGGT	2 cut(s)	739, 755
BsiHKAI	GWGCWC	1 cut(s)	749
BsiHKCI	CYCGRG	1 cut(s)	867
BsiSI	CCGG	5 cut(s)	280, 740, 756, 842, 919
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	1 cut(s)	841
BsmAI	GTCTC	2 cut(s)	183, 246
BsmFI	GGGAC	1 cut(s)	428
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	4 cut(s)	110, 879, 936, 977
BsoBI	CYCGRG	1 cut(s)	867
Bsp1286I	GDGCHC	2 cut(s)	749, 852
Bsp143I	GATC	2 cut(s)	940, 958
BspACI	CCGC	4 cut(s)	216, 365, 633, 891
BspANI	GGCC	4 cut(s)	110, 879, 936, 977
BspCNI	CTCAG	3 cut(s)	73, 154, 756
BspLI	GGNNCC	2 cut(s)	504, 519
BspMAI	CTGCAG	1 cut(s)	207
BspT107I	GGYRCC	1 cut(s)	517
BsrBI	CCGCTC	1 cut(s)	891
BsrDI	GCAATG	2 cut(s)	261, 836
BsrFI	RCCGGY	4 cut(s)	739, 755, 841, 918
BsrI	ACTGG	2 cut(s)	953, 977
BssAI	RCCGGY	4 cut(s)	739, 755, 841, 918
BssECI	CCNNGG	3 cut(s)	497, 545, 694
BssMI	GATC	2 cut(s)	940, 958
BssSI	CACGAG	2 cut(s)	430, 602
BssT1I	CCWWGG	1 cut(s)	497
Bst2BI	CACGAG	2 cut(s)	430, 602
Bst2UI	CCWGG	3 cut(s)	324, 547, 695
Bst6I	CTCTTC	1 cut(s)	551
BstAPI	GCANNNNNTGC	1 cut(s)	376
BstBAI	YACGTR	1 cut(s)	341
BstC8I	GCNNGC	4 cut(s)	735, 843, 920, 924
BstDEI	CTNAG	4 cut(s)	60, 162, 764, 914
BstF5I	GGATG	3 cut(s)	10, 332, 382
BstKTI	GATC	2 cut(s)	943, 961
BstMAI	GTCTC	2 cut(s)	183, 246
BstMBI	GATC	2 cut(s)	940, 958
BstMWI	GCNNNNNNNGC	6 cut(s)	85, 221, 364, 376, 847, 856
BstNI	CCWGG	3 cut(s)	324, 547, 695
BstNSI	RCATGY	2 cut(s)	377, 866
BstSCI	CCNGG	4 cut(s)	279, 322, 545, 693
BstSFI	CTRYAG	1 cut(s)	203
BstSLI	GKGCMC	1 cut(s)	852
BstV1I	GCAGC	7 cut(s)	68, 143, 160, 217, 379, 382, 938
BstXI	CCANNNNNNTGG	1 cut(s)	514
Bsu36I	CCTNAGG	1 cut(s)	764
BsuI	GTATCC	1 cut(s)	770
BsuRI	GGCC	4 cut(s)	110, 879, 936, 977
BtsCI	GGATG	3 cut(s)	10, 332, 382
BtsI	GCAGTG	3 cut(s)	776, 852, 901
BtsIMutI	CAGTG	4 cut(s)	74, 776, 852, 901
Cac8I	GCNNGC	4 cut(s)	735, 843, 920, 924
CaiI	CAGNNNCTG	1 cut(s)	694
Cfr10I	RCCGGY	4 cut(s)	739, 755, 841, 918
Cfr13I	GGNCC	2 cut(s)	691, 975
Csp6I	GTAC	3 cut(s)	277, 414, 832
CspAI	ACCGGT	2 cut(s)	739, 755
CviAII	CATG	9 cut(s)	193, 374, 394, 730, 750, 807, 863, 938, 983
CviQI	GTAC	3 cut(s)	277, 414, 832
DdeI	CTNAG	4 cut(s)	60, 162, 764, 914
DpnI	GATC	2 cut(s)	942, 960
DpnII	GATC	2 cut(s)	940, 958
DraI	TTTAAA	1 cut(s)	576
EaeI	YGGCCR	2 cut(s)	108, 877
Eam1104I	CTCTTC	1 cut(s)	551
EarI	CTCTTC	1 cut(s)	551
EciI	GGCGGA	1 cut(s)	648
Eco130I	CCWWGG	1 cut(s)	497
Eco47I	GGWCC	1 cut(s)	691
Eco57I	CTGAAG	2 cut(s)	257, 951
Eco72I	CACGTG	1 cut(s)	341
Eco81I	CCTNAGG	1 cut(s)	764
Eco88I	CYCGRG	1 cut(s)	867
EcoO109I	RGGNCCY	1 cut(s)	691
EcoRII	CCWGG	3 cut(s)	322, 545, 693
EcoT14I	CCWWGG	1 cut(s)	497
ErhI	CCWWGG	1 cut(s)	497
FaeI	CATG	9 cut(s)	196, 377, 397, 733, 753, 810, 866, 941, 986
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	9 cut(s)	192, 373, 393, 729, 749, 806, 862, 937, 982
FauI	CCCGC	1 cut(s)	372
FauNDI	CATATG	2 cut(s)	354, 715
Fnu4HI	GCNGC	9 cut(s)	57, 132, 174, 206, 216, 368, 371, 892, 927
FokI	GGATG	3 cut(s)	17, 339, 369
Fsp4HI	GCNGC	9 cut(s)	57, 132, 174, 206, 216, 368, 371, 892, 927
FspBI	CTAG	1 cut(s)	498
GluI	GCNGC	9 cut(s)	57, 132, 174, 206, 216, 368, 371, 892, 927
HaeIII	GGCC	4 cut(s)	110, 879, 936, 977
HapII	CCGG	5 cut(s)	280, 740, 756, 842, 919
Hin1II	CATG	9 cut(s)	196, 377, 397, 733, 753, 810, 866, 941, 986
HincII	GTYRAC	2 cut(s)	649, 726
HindII	GTYRAC	2 cut(s)	649, 726
HindIII	AAGCTT	1 cut(s)	402
HinfI	GANTC	4 cut(s)	33, 437, 703, 722
HpaI	GTTAAC	1 cut(s)	649
HpaII	CCGG	5 cut(s)	280, 740, 756, 842, 919
HphI	GGTGA	2 cut(s)	131, 650
Hpy166II	GTNNAC	3 cut(s)	320, 649, 726
Hpy188I	TCNGA	2 cut(s)	163, 676
Hpy188III	TCNNGA	7 cut(s)	20, 140, 182, 480, 620, 689, 763
Hpy8I	GTNNAC	3 cut(s)	320, 649, 726
HpyAV	CCTTC	4 cut(s)	188, 604, 910, 926
HpyCH4IV	ACGT	1 cut(s)	340
HpyF10VI	GCNNNNNNNGC	6 cut(s)	85, 221, 364, 376, 847, 856
HpyF3I	CTNAG	4 cut(s)	60, 162, 764, 914
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	9 cut(s)	196, 377, 397, 733, 753, 810, 866, 941, 986
KroI	GCCGGC	2 cut(s)	841, 918
KroNI	GCCGGC	2 cut(s)	843, 920
KspAI	GTTAAC	1 cut(s)	649
Kzo9I	GATC	2 cut(s)	940, 958
Lsp1109I	GCAGC	7 cut(s)	68, 143, 160, 217, 379, 382, 938
LweI	GCATC	7 cut(s)	25, 66, 118, 202, 317, 388, 448
MaeI	CTAG	1 cut(s)	498
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	2 cut(s)	942, 960
MbiI	CCGCTC	1 cut(s)	891
MboI	GATC	2 cut(s)	940, 958
MboII	GAAGA	4 cut(s)	42, 263, 303, 568
MfeI	CAATTG	1 cut(s)	219
MhlI	GDGCHC	2 cut(s)	749, 852
MlsI	TGGCCA	1 cut(s)	110
MluCI	AATT	4 cut(s)	148, 219, 333, 596
MluNI	TGGCCA	1 cut(s)	110
MlyI	GAGTC	1 cut(s)	731
MnlI	CCTC	8 cut(s)	396, 399, 544, 552, 562, 629, 759, 814
Mox20I	TGGCCA	1 cut(s)	110
MroNI	GCCGGC	2 cut(s)	841, 918
MscI	TGGCCA	1 cut(s)	110
MseI	TTAA	2 cut(s)	575, 648
MslI	CAYNNNNRTG	3 cut(s)	325, 396, 742
Msp20I	TGGCCA	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	929
MspI	CCGG	5 cut(s)	280, 740, 756, 842, 919
MspR9I	CCNGG	4 cut(s)	281, 324, 547, 695
MunI	CAATTG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	197
MvaI	CCWGG	3 cut(s)	324, 547, 695
MwoI	GCNNNNNNNGC	6 cut(s)	85, 221, 364, 376, 847, 856
NaeI	GCCGGC	2 cut(s)	843, 920
NciI	CCSGG	1 cut(s)	281
NdeI	CATATG	2 cut(s)	354, 715
NdeII	GATC	2 cut(s)	940, 958
NgoMIV	GCCGGC	2 cut(s)	841, 918
NlaIII	CATG	9 cut(s)	196, 377, 397, 733, 753, 810, 866, 941, 986
NlaIV	GGNNCC	2 cut(s)	504, 519
NmuCI	GTSAC	1 cut(s)	477
NspI	RCATGY	2 cut(s)	377, 866
OliI	CACNNNNGTG	1 cut(s)	742
PctI	GAATGC	1 cut(s)	197
PdiI	GCCGGC	2 cut(s)	843, 920
PfeI	GAWTC	3 cut(s)	33, 437, 703
PinAI	ACCGGT	2 cut(s)	739, 755
PkrI	GCNGC	9 cut(s)	58, 133, 175, 207, 217, 369, 372, 893, 928
PleI	GAGTC	1 cut(s)	730
PmaCI	CACGTG	1 cut(s)	341
PmlI	CACGTG	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	730
Ppu21I	YACGTR	1 cut(s)	341
PpuMI	RGGWCCY	1 cut(s)	691
Psp5II	RGGWCCY	1 cut(s)	691
Psp6I	CCWGG	3 cut(s)	322, 545, 693
PspCI	CACGTG	1 cut(s)	341
PspGI	CCWGG	3 cut(s)	322, 545, 693
PspN4I	GGNNCC	2 cut(s)	504, 519
PspPI	GGNCC	2 cut(s)	691, 975
PspPPI	RGGWCCY	1 cut(s)	691
PstI	CTGCAG	1 cut(s)	207
PstNI	CAGNNNCTG	1 cut(s)	694
PvuII	CAGCTG	1 cut(s)	929
RsaI	GTAC	3 cut(s)	278, 415, 833
RsaNI	GTAC	3 cut(s)	277, 414, 832
RseI	CAYNNNNRTG	3 cut(s)	325, 396, 742
SaqAI	TTAA	2 cut(s)	575, 648
SatI	GCNGC	9 cut(s)	57, 132, 174, 206, 216, 368, 371, 892, 927
Sau3AI	GATC	2 cut(s)	940, 958
Sau96I	GGNCC	2 cut(s)	691, 975
SchI	GAGTC	1 cut(s)	731
ScrFI	CCNGG	4 cut(s)	281, 324, 547, 695
SduI	GDGCHC	2 cut(s)	749, 852
SfaNI	GCATC	7 cut(s)	25, 66, 118, 202, 317, 388, 448
SfcI	CTRYAG	1 cut(s)	203
SgrAI	CRCCGGYG	1 cut(s)	739
SinI	GGWCC	1 cut(s)	691
SmiI	ATTTAAAT	1 cut(s)	576
SmiMI	CAYNNNNRTG	3 cut(s)	325, 396, 742
SmlI	CTYRAG	1 cut(s)	962
SmoI	CTYRAG	1 cut(s)	962
Sse9I	AATT	4 cut(s)	148, 219, 333, 596
SsiI	CCGC	4 cut(s)	216, 365, 633, 891
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	4 cut(s)	279, 322, 545, 693
StyI	CCWWGG	1 cut(s)	497
SwaI	ATTTAAAT	1 cut(s)	576
TaiI	ACGT	1 cut(s)	343
TasI	AATT	4 cut(s)	148, 219, 333, 596
TauI	GCSGC	2 cut(s)	218, 894
TfiI	GAWTC	3 cut(s)	33, 437, 703
Tru1I	TTAA	2 cut(s)	575, 648
Tru9I	TTAA	2 cut(s)	575, 648
TscAI	CASTG	4 cut(s)	74, 776, 852, 901
TseFI	GTSAC	1 cut(s)	477
TseI	GCWGC	7 cut(s)	56, 131, 173, 205, 367, 370, 926
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	3 cut(s)	110, 410, 414
TspGWI	ACGGA	2 cut(s)	244, 430
TspRI	CASTG	4 cut(s)	74, 776, 852, 901
VpaK11BI	GGWCC	1 cut(s)	691
XapI	RAATTY	2 cut(s)	148, 333
XceI	RCATGY	2 cut(s)	377, 866
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338
XmaJI	CCTAGG	1 cut(s)	497
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.