RLG00000011173

Protein BASIC PENTACYSTEINE6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0006781
Physical Location & Seq
Reverse (-)
7347166 .. 7349261
2096 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011173

Sequence Viewer

Length: 1137 bp
ATGAGAAGAGCGCAAAAAGTAGAAAATTCTTCTTCTTCTTCTACCCGACCAGTACTCTTCCACGGCGTTTCCTCGTCTTCTCAAATCAGGGTTCCCCTCAGCTCTCTGATGGATGATGGTGGGCATCGTGAAAATGGAAGACTCAAAGCAGAACAGCAGTATAAAGCAGCTCAGGGTCAGTGGTTGATGCAACATCAACCACATCAACCATCGATGAAACAGATAATGGCCATAATGGCCGAGAGAGATGCAGCCATTCAAGAAAGAAATTTGGCCTTCTCTGAGAAGAAGACTGCCCTTGCAGAGCGAGACATGGCATTCCTGCAGCGAGATGCAGCAATTGCGGAACGAAATAATGCCATAATTGAACGAGACAATGCCATTGCAACACTTCAGTACCGAGAAAACTCCTCCTTAACCAGTGGCAATGTATCTTCATGTCCACCAGGATGCCAAATTTCACGTGGGATCAAACATATGCACAACCCGCAGCAGCATGTACATCATCTACCCCACATGAATGAAGCTTCATACGGTACAAGGGAGATGCACACAAACGATTCCCTGCCACTACCACCAGATCCTCCCACAGCTCCCAAGTCTAGGCAGACCAAACGACCAAAGGAGCCCAAGACAACGCCCCCAAACAAAAAACCGGCGAAATCTCCAAGGAAGGTCAAGAGGGAGAGCGAGGACTTGAACAAGATGACGTTTGACAGATTGCATGAGTGGAAGGGTGGTCAGGAAATGTGCGGTGGTGCTGAAGATCTTAACAAACAGTTGGTTGTGTCAAAGTCTGATTGGAAATGTCAGGACCTGGGGTTGAACCAGGTTGCATACGATGACTCAACCATGCCAGCACCGGTGTGCTCCTGCACTGGTGTTCTGAGGCAATGCTACAAGTGGGGAAACGGGGGTTGGCAATCCTCGTGTTGCACTACTACAATGTCAATATACCCACTGCCAGCAGTGCCCAATAAACGACATGCCAGAGTAGGTGGCCGGAAGATGAGCGGAAGTGCTTTCAACAAGTTAATTAGTCGACTGGCAGCTGAAGGCCATGATCTGTCGAATCCAGTTGATCTCAAGGACAACTGGGCCAAGCATGGAACAAATCGCTACATTACGATCAAGTAG

Protein Analysis

379

Amino Acids

42.22

Weight (kDa)

9.54

Isoelectric Point (pI)

60.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAGA_bind PF06217 37 - 378 2.8e-115 GAGA binding protein-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1014
AccI GTMKAC 1 cut(s) 1042
AciI CCGC 4 cut(s) 344, 488, 753, 1014
AclWI GGATC 2 cut(s) 476, 575
AcoI YGGCCR 3 cut(s) 228, 237, 1000
AcsI RAATTY 3 cut(s) 25, 268, 456
AcuI CTGAAG 3 cut(s) 377, 783, 1074
AcvI CACGTG 1 cut(s) 464
AfaI GTAC 4 cut(s) 54, 398, 501, 538
AfiI CCNNNNNNNGG 1 cut(s) 603
AgeI ACCGGT 1 cut(s) 862
AgsI TTSAA 5 cut(s) 260, 368, 700, 826, 1027
AjnI CCWGG 3 cut(s) 445, 816, 828
AjuI GAANNNNNNNTTGG 2 cut(s) 901, 933
AleI CACNNNNGTG 1 cut(s) 865
AluBI AGCT 5 cut(s) 102, 170, 527, 593, 1052
AluI AGCT 5 cut(s) 102, 170, 527, 593, 1052
Alw21I GWGCWC 1 cut(s) 872
Alw26I GTCTC 2 cut(s) 303, 366
AlwI GGATC 2 cut(s) 476, 575
AlwNI CAGNNNCTG 1 cut(s) 817
AoxI GGCC 6 cut(s) 228, 237, 273, 1000, 1057, 1098
ApeKI GCWGC 7 cut(s) 167, 251, 325, 335, 490, 493, 1049
ApoI RAATTY 3 cut(s) 25, 268, 456
AsiGI ACCGGT 1 cut(s) 862
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 2 cut(s) 814, 1098
AvaII GGWCC 1 cut(s) 814
BaeGI GKGCMC 1 cut(s) 975
BaeI ACNNNNGTAYC 2 cut(s) 380, 413
BalI TGGCCA 1 cut(s) 230
BanII GRGCYC 1 cut(s) 630
BauI CACGAG 1 cut(s) 928
BbrPI CACGTG 1 cut(s) 464
BbsI GAAGAC 3 cut(s) 69, 145, 296
Bbv12I GWGCWC 1 cut(s) 872
BbvCI CCTCAGC 1 cut(s) 98
BbvI GCAGC 7 cut(s) 179, 263, 337, 347, 502, 505, 1061
BccI CCATC 3 cut(s) 103, 110, 217
BceAI ACGGC 1 cut(s) 79
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BciT130I CCWGG 3 cut(s) 447, 818, 830
BcoDI GTCTC 2 cut(s) 303, 366
BfaI CTAG 1 cut(s) 603
BfmI CTRYAG 1 cut(s) 323
BglI GCCNNNNNGGC 1 cut(s) 236
BglII AGATCT 1 cut(s) 766
BisI GCNGC 7 cut(s) 168, 252, 326, 336, 491, 494, 1050
BlsI GCNGC 7 cut(s) 169, 253, 327, 337, 492, 495, 1051
BmcAI AGTACT 1 cut(s) 54
Bme1390I CCNGG 3 cut(s) 447, 818, 830
Bme18I GGWCC 1 cut(s) 814
BmgT120I GGNCC 2 cut(s) 814, 1098
BmiI GGNNCC 2 cut(s) 93, 627
BmrFI CCNGG 3 cut(s) 447, 818, 830
BmrI ACTGGG 1 cut(s) 1105
BmsI GCATC 6 cut(s) 133, 177, 238, 322, 440, 537
BmuI ACTGGG 1 cut(s) 1105
BpiI GAAGAC 3 cut(s) 69, 145, 296
Bpu10I CCTNAGC 2 cut(s) 98, 171
BpuEI CTTGAG 1 cut(s) 1070
Bsa29I ATCGAT 1 cut(s) 212
BsaAI YACGTR 1 cut(s) 464
BsaJI CCNNGG 3 cut(s) 61, 668, 817
BsaWI WCCGGW 1 cut(s) 862
Bsc4I CCNNNNNNNGG 1 cut(s) 603
Bse118I RCCGGY 2 cut(s) 655, 862
Bse1I ACTGG 6 cut(s) 50, 420, 883, 1050, 1076, 1100
Bse3DI GCAATG 3 cut(s) 381, 433, 899
BseBI CCWGG 3 cut(s) 447, 818, 830
BseCI ATCGAT 1 cut(s) 212
BseDI CCNNGG 3 cut(s) 61, 668, 817
BseGI GGATG 2 cut(s) 118, 455
BseLI CCNNNNNNNGG 1 cut(s) 603
BseMI GCAATG 3 cut(s) 381, 433, 899
BseMII CTCAG 4 cut(s) 112, 185, 273, 878
BseNI ACTGG 6 cut(s) 50, 420, 883, 1050, 1076, 1100
BseRI GAGGAG 1 cut(s) 400
BseSI GKGCMC 1 cut(s) 975
BseXI GCAGC 7 cut(s) 179, 263, 337, 347, 502, 505, 1061
BsgI GTGCAG 1 cut(s) 859
BshFI GGCC 6 cut(s) 230, 239, 275, 1002, 1059, 1100
BshTI ACCGGT 1 cut(s) 862
BshVI ATCGAT 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 872
BsiSI CCGG 3 cut(s) 656, 863, 1003
BslI CCNNNNNNNGG 1 cut(s) 603
BsmAI GTCTC 2 cut(s) 303, 366
BsmI GAATGC 1 cut(s) 317
BsnI GGCC 6 cut(s) 230, 239, 275, 1002, 1059, 1100
Bsp1286I GDGCHC 3 cut(s) 630, 872, 975
Bsp1407I TGTACA 1 cut(s) 499
Bsp143I GATC 6 cut(s) 468, 580, 766, 1063, 1081, 1128
BspACI CCGC 4 cut(s) 344, 488, 753, 1014
BspANI GGCC 6 cut(s) 230, 239, 275, 1002, 1059, 1100
BspCNI CTCAG 4 cut(s) 111, 184, 274, 879
BspDI ATCGAT 1 cut(s) 212
BspLI GGNNCC 2 cut(s) 93, 627
BspMAI CTGCAG 1 cut(s) 327
BspPI GGATC 2 cut(s) 476, 575
BsrBI CCGCTC 1 cut(s) 1014
BsrDI GCAATG 3 cut(s) 381, 433, 899
BsrFI RCCGGY 2 cut(s) 655, 862
BsrGI TGTACA 1 cut(s) 499
BsrI ACTGG 6 cut(s) 50, 420, 883, 1050, 1076, 1100
BssAI RCCGGY 2 cut(s) 655, 862
BssECI CCNNGG 3 cut(s) 61, 668, 817
BssMI GATC 6 cut(s) 468, 580, 766, 1063, 1081, 1128
BssSI CACGAG 1 cut(s) 928
BssT1I CCWWGG 1 cut(s) 668
Bst2BI CACGAG 1 cut(s) 928
Bst2UI CCWGG 3 cut(s) 447, 818, 830
Bst4CI ACNGT 2 cut(s) 536, 780
Bst6I CTCTTC 1 cut(s) 62
BstAPI GCANNNNNTGC 1 cut(s) 341
BstAUI TGTACA 1 cut(s) 499
BstBAI YACGTR 1 cut(s) 464
BstC8I GCNNGC 2 cut(s) 858, 966
BstDEI CTNAG 4 cut(s) 98, 171, 282, 887
BstDSI CCRYGG 1 cut(s) 61
BstF5I GGATG 2 cut(s) 118, 455
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 6 cut(s) 471, 583, 769, 1066, 1084, 1131
BstMAI GTCTC 2 cut(s) 303, 366
BstMBI GATC 6 cut(s) 468, 580, 766, 1063, 1081, 1128
BstMWI GCNNNNNNNGC 4 cut(s) 236, 341, 487, 970
BstNI CCWGG 3 cut(s) 447, 818, 830
BstNSI RCATGY 2 cut(s) 500, 989
BstSCI CCNGG 3 cut(s) 445, 816, 828
BstSFI CTRYAG 1 cut(s) 323
BstSLI GKGCMC 1 cut(s) 975
BstV1I GCAGC 7 cut(s) 179, 263, 337, 347, 502, 505, 1061
BstV2I GAAGAC 3 cut(s) 69, 145, 296
BstX2I RGATCY 2 cut(s) 580, 766
BstYI RGATCY 2 cut(s) 580, 766
Bsu15I ATCGAT 1 cut(s) 212
BsuRI GGCC 6 cut(s) 230, 239, 275, 1002, 1059, 1100
BsuTUI ATCGAT 1 cut(s) 212
BtgI CCRYGG 1 cut(s) 61
BtsCI GGATG 2 cut(s) 118, 455
BtsI GCAGTG 2 cut(s) 959, 975
BtsIMutI CAGTG 5 cut(s) 185, 427, 876, 959, 975
Cac8I GCNNGC 2 cut(s) 858, 966
CaiI CAGNNNCTG 1 cut(s) 817
CfoI GCGC 1 cut(s) 13
Cfr10I RCCGGY 2 cut(s) 655, 862
Cfr13I GGNCC 2 cut(s) 814, 1098
ClaI ATCGAT 1 cut(s) 212
CsiI ACCWGGT 1 cut(s) 828
Csp6I GTAC 4 cut(s) 53, 397, 500, 537
CspAI ACCGGT 1 cut(s) 862
CviAII CATG 9 cut(s) 313, 438, 497, 517, 725, 853, 986, 1061, 1106
CviQI GTAC 4 cut(s) 53, 397, 500, 537
DdeI CTNAG 4 cut(s) 98, 171, 282, 887
DpnI GATC 6 cut(s) 470, 582, 768, 1065, 1083, 1130
DpnII GATC 6 cut(s) 468, 580, 766, 1063, 1081, 1128
EaeI YGGCCR 3 cut(s) 228, 237, 1000
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 668
Eco24I GRGCYC 1 cut(s) 630
Eco47I GGWCC 1 cut(s) 814
Eco57I CTGAAG 3 cut(s) 377, 783, 1074
Eco72I CACGTG 1 cut(s) 464
EcoO109I RGGNCCY 1 cut(s) 814
EcoRII CCWGG 3 cut(s) 445, 816, 828
EcoT14I CCWWGG 1 cut(s) 668
EcoT38I GRGCYC 1 cut(s) 630
ErhI CCWWGG 1 cut(s) 668
FaeI CATG 9 cut(s) 316, 441, 500, 520, 728, 856, 989, 1064, 1109
FatI CATG 9 cut(s) 312, 437, 496, 516, 724, 852, 985, 1060, 1105
FauI CCCGC 1 cut(s) 495
FauNDI CATATG 1 cut(s) 477
FblI GTMKAC 1 cut(s) 1042
Fnu4HI GCNGC 7 cut(s) 168, 252, 326, 336, 491, 494, 1050
FokI GGATG 2 cut(s) 125, 462
FriOI GRGCYC 1 cut(s) 630
Fsp4HI GCNGC 7 cut(s) 168, 252, 326, 336, 491, 494, 1050
FspBI CTAG 1 cut(s) 603
GlaI GCGC 1 cut(s) 12
GluI GCNGC 7 cut(s) 168, 252, 326, 336, 491, 494, 1050
HaeIII GGCC 6 cut(s) 230, 239, 275, 1002, 1059, 1100
HapII CCGG 3 cut(s) 656, 863, 1003
HhaI GCGC 1 cut(s) 13
Hin1II CATG 9 cut(s) 316, 441, 500, 520, 728, 856, 989, 1064, 1109
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HincII GTYRAC 1 cut(s) 1043
HindII GTYRAC 1 cut(s) 1043
HindIII AAGCTT 1 cut(s) 525
HinfI GANTC 4 cut(s) 141, 560, 845, 1072
HpaII CCGG 3 cut(s) 656, 863, 1003
Hpy166II GTNNAC 2 cut(s) 443, 1043
Hpy188I TCNGA 4 cut(s) 108, 283, 799, 888
Hpy188III TCNNGA 5 cut(s) 128, 260, 679, 743, 812
Hpy8I GTNNAC 2 cut(s) 443, 1043
HpyAV CCTTC 4 cut(s) 286, 667, 727, 1049
HpyCH4III ACNGT 2 cut(s) 536, 780
HpyCH4IV ACGT 2 cut(s) 463, 710
HpyF10VI GCNNNNNNNGC 4 cut(s) 236, 341, 487, 970
HpyF3I CTNAG 4 cut(s) 98, 171, 282, 887
HpySE526I ACGT 2 cut(s) 463, 710
Hsp92II CATG 9 cut(s) 316, 441, 500, 520, 728, 856, 989, 1064, 1109
HspAI GCGC 1 cut(s) 11
Kzo9I GATC 6 cut(s) 468, 580, 766, 1063, 1081, 1128
LmnI GCTCC 3 cut(s) 598, 625, 875
Lsp1109I GCAGC 7 cut(s) 179, 263, 337, 347, 502, 505, 1061
LweI GCATC 6 cut(s) 133, 177, 238, 322, 440, 537
MabI ACCWGGT 1 cut(s) 828
MaeI CTAG 1 cut(s) 603
MaeII ACGT 2 cut(s) 463, 710
MalI GATC 6 cut(s) 470, 582, 768, 1065, 1083, 1130
MbiI CCGCTC 1 cut(s) 1014
MboI GATC 6 cut(s) 468, 580, 766, 1063, 1081, 1128
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 2 cut(s) 580, 766
MhlI GDGCHC 3 cut(s) 630, 872, 975
MlsI TGGCCA 1 cut(s) 230
MluCI AATT 6 cut(s) 25, 268, 339, 363, 456, 1035
MluNI TGGCCA 1 cut(s) 230
MlyI GAGTC 2 cut(s) 135, 839
MnlI CCTC 8 cut(s) 82, 107, 421, 594, 675, 685, 882, 937
Mox20I TGGCCA 1 cut(s) 230
MscI TGGCCA 1 cut(s) 230
MseI TTAA 3 cut(s) 416, 771, 1034
MslI CAYNNNNRTG 3 cut(s) 448, 519, 865
Msp20I TGGCCA 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 1052
MspI CCGG 3 cut(s) 656, 863, 1003
MspR9I CCNGG 3 cut(s) 447, 818, 830
MunI CAATTG 1 cut(s) 339
Mva1269I GAATGC 1 cut(s) 317
MvaI CCWGG 3 cut(s) 447, 818, 830
MwoI GCNNNNNNNGC 4 cut(s) 236, 341, 487, 970
NdeI CATATG 1 cut(s) 477
NdeII GATC 6 cut(s) 468, 580, 766, 1063, 1081, 1128
NlaIII CATG 9 cut(s) 316, 441, 500, 520, 728, 856, 989, 1064, 1109
NlaIV GGNNCC 2 cut(s) 93, 627
NmeAIII GCCGAG 1 cut(s) 265
NspI RCATGY 2 cut(s) 500, 989
OliI CACNNNNGTG 1 cut(s) 865
PctI GAATGC 1 cut(s) 317
PfeI GAWTC 2 cut(s) 560, 1072
PinAI ACCGGT 1 cut(s) 862
PkrI GCNGC 7 cut(s) 169, 253, 327, 337, 492, 495, 1051
PleI GAGTC 2 cut(s) 135, 839
PmaCI CACGTG 1 cut(s) 464
PmlI CACGTG 1 cut(s) 464
PpsI GAGTC 2 cut(s) 135, 839
Ppu21I YACGTR 1 cut(s) 464
PpuMI RGGWCCY 1 cut(s) 814
Psp5II RGGWCCY 1 cut(s) 814
Psp6I CCWGG 3 cut(s) 445, 816, 828
PspCI CACGTG 1 cut(s) 464
PspGI CCWGG 3 cut(s) 445, 816, 828
PspN4I GGNNCC 2 cut(s) 93, 627
PspPI GGNCC 2 cut(s) 814, 1098
PspPPI RGGWCCY 1 cut(s) 814
PstI CTGCAG 1 cut(s) 327
PstNI CAGNNNCTG 1 cut(s) 817
PsuI RGATCY 2 cut(s) 580, 766
PvuII CAGCTG 1 cut(s) 1052
RsaI GTAC 4 cut(s) 54, 398, 501, 538
RsaNI GTAC 4 cut(s) 53, 397, 500, 537
RseI CAYNNNNRTG 3 cut(s) 448, 519, 865
SalI GTCGAC 1 cut(s) 1041
SaqAI TTAA 3 cut(s) 416, 771, 1034
SatI GCNGC 7 cut(s) 168, 252, 326, 336, 491, 494, 1050
Sau3AI GATC 6 cut(s) 468, 580, 766, 1063, 1081, 1128
Sau96I GGNCC 2 cut(s) 814, 1098
ScaI AGTACT 1 cut(s) 54
SchI GAGTC 2 cut(s) 135, 839
ScrFI CCNGG 3 cut(s) 447, 818, 830
SduI GDGCHC 3 cut(s) 630, 872, 975
SexAI ACCWGGT 1 cut(s) 828
SfaNI GCATC 6 cut(s) 133, 177, 238, 322, 440, 537
SfcI CTRYAG 1 cut(s) 323
SfiI GGCCNNNNNGGCC 1 cut(s) 236
SgrAI CRCCGGYG 1 cut(s) 862
SinI GGWCC 1 cut(s) 814
SmiMI CAYNNNNRTG 3 cut(s) 448, 519, 865
SmlI CTYRAG 1 cut(s) 1085
SmoI CTYRAG 1 cut(s) 1085
Sse9I AATT 6 cut(s) 25, 268, 339, 363, 456, 1035
SsiI CCGC 4 cut(s) 344, 488, 753, 1014
SspMI CTAG 1 cut(s) 603
StyD4I CCNGG 3 cut(s) 445, 816, 828
StyI CCWWGG 1 cut(s) 668
TaaI ACNGT 2 cut(s) 536, 780
TaiI ACGT 2 cut(s) 466, 713
TaqI TCGA 3 cut(s) 212, 1042, 1070
TasI AATT 6 cut(s) 25, 268, 339, 363, 456, 1035
TatI WGTACW 2 cut(s) 52, 499
TfiI GAWTC 2 cut(s) 560, 1072
Tru1I TTAA 3 cut(s) 416, 771, 1034
Tru9I TTAA 3 cut(s) 416, 771, 1034
TscAI CASTG 5 cut(s) 185, 427, 883, 966, 975
TseI GCWGC 7 cut(s) 167, 251, 325, 335, 490, 493, 1049
TspDTI ATGAA 5 cut(s) 230, 426, 519, 533, 537
TspRI CASTG 5 cut(s) 185, 427, 883, 966, 975
VpaK11BI GGWCC 1 cut(s) 814
XapI RAATTY 3 cut(s) 25, 268, 456
XceI RCATGY 2 cut(s) 500, 989
XcmI CCANNNNNNNNNTGG 1 cut(s) 461
XmiI GTMKAC 1 cut(s) 1042
XspI CTAG 1 cut(s) 603
ZrmI AGTACT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.