FvH4_2g40790

homogentisate phytyltransferase 1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017256
Physical Location & Seq
Reverse (-)
28993404 .. 28996090
2687 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40790.t1

Sequence Viewer

Length: 1203 bp
ATGCCACCTCTTGGGGTAGTAGCGCCGGCGCCACTGAAGCTAAAACAGTGCCACTTTTTAATCAAGAACAAGAAGCCGTTGCCCTTCCCTTCCTTGCAGCCACATTATCATCGTTGTCACTCATCATCTTTAGTTACTGCCAATGCAAATCCAAATCCAAATCCAAGTATTCCAAACCGTGATGATCGGAAAATCACAGTAACCAAAACAAGAGGAGGAGATCATGGACGTATAAAACATTCACGATCAGAGGAGATCGATATAAATATTGATGGACCATTCCTGAATAGATTTCTCATTTCCAAACAATGGGATGCTTTTCATCGCTTTTGTCGTCCTCATACTATAATCGGCACTGTCGTAGGTATATTATCGGTCTCTCTTCTTCCATTGGAACAAATTGGGGACTTGTCACCTGCATTTTTTATAGGAATATTGAAGGCATTGGTTCCCTCTGTGCTAATGAACATATATGTGGTGGGATTGAATCAAGTGTTTGATGTCGAAATCGACAAGGTTAACAAACCTGATCTCCCTCTAGCTTCAGGTGAATTCTCCATGGGAACTGGGATATCAATCGTTTCCGCGGTTTTGCTGATGAGTTTTGCTATGGGAGTTATGTTTAAGTCTCCACCTCTGTTCTCTGCCCTTGCCATTGGCTTTTTTCTTGGAAGTGCTTATTCAATTGAGCTTCCACTGCTCAGGTGGAAGAGACATGCAATTCTCGCTGCTGCTTGCATCCTAATTGTGAGAGCTATCGTCGTCCAGGTTGCCTTCTTTGTACACATGCAGAAGTACGTTCTTGGTAGAGAAATTGCAATTACAAGACCATTGGTATTCGCGGTGGTTTTCATGTGCATATTTACCTCTGTTATTGCATTGTTCAAGGATATACCTGACGTGGATGGTGATAGAGATTTTGGAATCCAATCTTTCAGTGTCAGCCTTGGCCAAAAAAAGGTGTATTGGATTTGTGTAAATATGTTGTTACTGGCATATGGGGCAGCAGTCCTGATAGGAGCCTCGTCTTCATTCCTACCAAGCAAGCTTTTCACTATAATCAGTCATGGTGCACTTGCTTCTCTTTTATGGCTTCGAGCTCGATCAACAGACACAGCCAATAAAGCCTCCCTAACCTCTTTTTACATGTTCATTTGGAAGCTGTTTTACGCGGAATATCTGCTCATTCCTTTTGTACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 ko01100 ko01110 map00130 map01100 map01110
Pfam Domains
Protein Families
UbiA

Protein Analysis

401

Amino Acids

44.3

Weight (kDa)

9.64

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 133 - 388 1.9e-38 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017256)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40790
malus_domestica MD08G1060100.v1.1
prunus_persica Prupe.1G390700_v2.0.a1
pyrus_communis pycom08g05010
rosa_chinensis RchiOBHm_Chr6g0299791
rosa_laevigata RLG00000011387
rosa_roxburghii Rroxscaffold_7G00168360
rosa_rugosa Rorug06G0292300
rosa_samantha Rh6AG403400 Rh6BG411800 Rh6CG417900 Rh6DG404700
rosa_wichuraiana Rw6G035300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 424
Acc36I ACCTGC 1 cut(s) 424
AccB1I GGYRCC 1 cut(s) 28
AccB7I CCANNNNNTGG 2 cut(s) 11, 309
AccII CGCG 3 cut(s) 587, 842, 1172
AciI CCGC 4 cut(s) 585, 587, 842, 1172
AcoI YGGCCR 1 cut(s) 949
AcsI RAATTY 1 cut(s) 551
AcuI CTGAAG 2 cut(s) 56, 528
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 3 cut(s) 783, 797, 1197
AfiI CCNNNNNNNGG 3 cut(s) 11, 309, 958
AflIII ACRYGT 1 cut(s) 1146
AgsI TTSAA 4 cut(s) 439, 487, 684, 886
AjiI CACGTC 1 cut(s) 901
AjnI CCWGG 1 cut(s) 765
AluBI AGCT 7 cut(s) 40, 542, 691, 755, 1048, 1100, 1162
AluI AGCT 7 cut(s) 40, 542, 691, 755, 1048, 1100, 1162
Alw21I GWGCWC 2 cut(s) 1075, 1102
Alw26I GTCTC 3 cut(s) 382, 633, 706
Alw44I GTGCAC 1 cut(s) 1071
AoxI GGCC 1 cut(s) 949
ApaLI GTGCAC 1 cut(s) 1071
ApeKI GCWGC 4 cut(s) 97, 728, 731, 1004
ApoI RAATTY 1 cut(s) 551
AspLEI GCGC 2 cut(s) 25, 31
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 3 cut(s) 405, 560, 920
AvaII GGWCC 1 cut(s) 275
BaeGI GKGCMC 1 cut(s) 1075
BalI TGGCCA 1 cut(s) 951
BanI GGYRCC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 1102
BarI GAAGNNNNNNTAC 2 cut(s) 1151, 1183
BbsI GAAGAC 1 cut(s) 1020
Bbv12I GWGCWC 2 cut(s) 1075, 1102
BbvI GCAGC 4 cut(s) 109, 715, 718, 1016
BccI CCATC 2 cut(s) 266, 899
BceAI ACGGC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 767
BcoDI GTCTC 3 cut(s) 382, 633, 706
BfaI CTAG 1 cut(s) 539
BfoI RGCGCY 2 cut(s) 26, 32
BfuAI ACCTGC 1 cut(s) 424
BisI GCNGC 4 cut(s) 98, 729, 732, 1005
BlsI GCNGC 4 cut(s) 99, 730, 733, 1006
Bme1390I CCNGG 1 cut(s) 767
Bme18I GGWCC 1 cut(s) 275
BmgBI CACGTC 1 cut(s) 901
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 3 cut(s) 30, 450, 1021
BmrFI CCNGG 1 cut(s) 767
BmrI ACTGGG 1 cut(s) 576
BmsI GCATC 2 cut(s) 304, 747
BmuI ACTGGG 1 cut(s) 576
BpiI GAAGAC 1 cut(s) 1020
Bpu10I CCTNAGC 1 cut(s) 701
Bsa29I ATCGAT 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 575
BsaHI GRCGYC 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 382
BsaJI CCNNGG 3 cut(s) 558, 585, 946
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 309, 958
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 2 cut(s) 571, 996
Bse8I GATNNNNATC 1 cut(s) 575
BseBI CCWGG 1 cut(s) 767
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 3 cut(s) 558, 585, 946
BseGI GGATG 3 cut(s) 319, 738, 910
BseJI GATNNNNATC 1 cut(s) 575
BseLI CCNNNNNNNGG 3 cut(s) 11, 309, 958
BseMII CTCAG 1 cut(s) 715
BseNI ACTGG 2 cut(s) 571, 996
BseRI GAGGAG 3 cut(s) 228, 231, 266
BseSI GKGCMC 1 cut(s) 1075
BseXI GCAGC 4 cut(s) 109, 715, 718, 1016
Bsh1236I CGCG 3 cut(s) 587, 842, 1172
BshFI GGCC 1 cut(s) 951
BshNI GGYRCC 1 cut(s) 28
BshVI ATCGAT 1 cut(s) 258
BsiHKAI GWGCWC 2 cut(s) 1075, 1102
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 3 cut(s) 11, 309, 958
BsmAI GTCTC 3 cut(s) 382, 633, 706
BsmFI GGGAC 1 cut(s) 419
BsnI GGCC 1 cut(s) 951
Bso31I GGTCTC 1 cut(s) 382
Bsp1286I GDGCHC 2 cut(s) 1075, 1102
Bsp1407I TGTACA 1 cut(s) 781
Bsp143I GATC 6 cut(s) 184, 220, 245, 255, 529, 1103
Bsp19I CCATGG 1 cut(s) 558
BspACI CCGC 4 cut(s) 585, 587, 842, 1172
BspANI GGCC 1 cut(s) 951
BspCNI CTCAG 1 cut(s) 714
BspDI ATCGAT 1 cut(s) 258
BspFNI CGCG 3 cut(s) 587, 842, 1172
BspLI GGNNCC 3 cut(s) 30, 450, 1021
BspMI ACCTGC 1 cut(s) 424
BspT107I GGYRCC 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 382
BsrFI RCCGGY 1 cut(s) 25
BsrGI TGTACA 1 cut(s) 781
BsrI ACTGG 2 cut(s) 571, 996
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 3 cut(s) 558, 585, 946
BssMI GATC 6 cut(s) 184, 220, 245, 255, 529, 1103
BssNI GRCGYC 1 cut(s) 29
BssT1I CCWWGG 2 cut(s) 558, 946
Bst2UI CCWGG 1 cut(s) 767
Bst4CI ACNGT 4 cut(s) 48, 179, 199, 358
Bst6I CTCTTC 2 cut(s) 387, 704
BstACI GRCGYC 1 cut(s) 29
BstAUI TGTACA 1 cut(s) 781
BstC8I GCNNGC 3 cut(s) 27, 736, 1046
BstDEI CTNAG 1 cut(s) 701
BstDSI CCRYGG 2 cut(s) 558, 585
BstF5I GGATG 3 cut(s) 319, 738, 910
BstFNI CGCG 3 cut(s) 587, 842, 1172
BstH2I RGCGCY 2 cut(s) 26, 32
BstHHI GCGC 2 cut(s) 25, 31
BstKTI GATC 6 cut(s) 187, 223, 248, 258, 532, 1106
BstMAI GTCTC 3 cut(s) 382, 633, 706
BstMBI GATC 6 cut(s) 184, 220, 245, 255, 529, 1103
BstMWI GCNNNNNNNGC 5 cut(s) 37, 697, 725, 1001, 1124
BstNI CCWGG 1 cut(s) 767
BstNSI RCATGY 3 cut(s) 719, 790, 1150
BstSCI CCNGG 1 cut(s) 765
BstSLI GKGCMC 1 cut(s) 1075
BstUI CGCG 3 cut(s) 587, 842, 1172
BstV1I GCAGC 4 cut(s) 109, 715, 718, 1016
BstV2I GAAGAC 1 cut(s) 1020
Bsu15I ATCGAT 1 cut(s) 258
BsuRI GGCC 1 cut(s) 951
BsuTUI ATCGAT 1 cut(s) 258
BtgI CCRYGG 2 cut(s) 558, 585
BtgZI GCGATG 1 cut(s) 308
BtrI CACGTC 1 cut(s) 901
BtsCI GGATG 3 cut(s) 319, 738, 910
BtsI GCAGTG 1 cut(s) 695
BtsIMutI CAGTG 5 cut(s) 32, 53, 354, 695, 943
BveI ACCTGC 1 cut(s) 424
Cac8I GCNNGC 3 cut(s) 27, 736, 1046
CfoI GCGC 2 cut(s) 25, 31
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 275
Cfr42I CCGCGG 1 cut(s) 588
ClaI ATCGAT 1 cut(s) 258
Csp6I GTAC 3 cut(s) 782, 796, 1196
CviAII CATG 7 cut(s) 224, 559, 716, 787, 853, 1067, 1147
CviQI GTAC 3 cut(s) 782, 796, 1196
DdeI CTNAG 1 cut(s) 701
DinI GGCGCC 1 cut(s) 30
DpnI GATC 6 cut(s) 186, 222, 247, 257, 531, 1105
DpnII GATC 6 cut(s) 184, 220, 245, 255, 529, 1103
EaeI YGGCCR 1 cut(s) 949
Eam1104I CTCTTC 2 cut(s) 387, 704
EarI CTCTTC 2 cut(s) 387, 704
Ecl136II GAGCTC 1 cut(s) 1100
Eco130I CCWWGG 2 cut(s) 558, 946
Eco24I GRGCYC 1 cut(s) 1102
Eco31I GGTCTC 1 cut(s) 382
Eco32I GATATC 1 cut(s) 573
Eco47I GGWCC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 1100
Eco57I CTGAAG 2 cut(s) 56, 528
EcoICRI GAGCTC 1 cut(s) 1100
EcoRI GAATTC 1 cut(s) 551
EcoRII CCWGG 1 cut(s) 765
EcoRV GATATC 1 cut(s) 573
EcoT14I CCWWGG 2 cut(s) 558, 946
EcoT38I GRGCYC 1 cut(s) 1102
EgeI GGCGCC 1 cut(s) 30
EheI GGCGCC 1 cut(s) 30
ErhI CCWWGG 2 cut(s) 558, 946
FaeI CATG 7 cut(s) 227, 562, 719, 790, 856, 1070, 1150
FaqI GGGAC 1 cut(s) 419
FatI CATG 7 cut(s) 223, 558, 715, 786, 852, 1066, 1146
FauNDI CATATG 1 cut(s) 997
Fnu4HI GCNGC 4 cut(s) 98, 729, 732, 1005
FokI GGATG 3 cut(s) 326, 725, 917
FriOI GRGCYC 1 cut(s) 1102
Fsp4HI GCNGC 4 cut(s) 98, 729, 732, 1005
FspBI CTAG 1 cut(s) 539
GlaI GCGC 2 cut(s) 24, 30
GluI GCNGC 4 cut(s) 98, 729, 732, 1005
HaeII RGCGCY 2 cut(s) 26, 32
HaeIII GGCC 1 cut(s) 951
HapII CCGG 1 cut(s) 26
HhaI GCGC 2 cut(s) 25, 31
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 7 cut(s) 227, 562, 719, 790, 856, 1070, 1150
Hin6I GCGC 2 cut(s) 23, 29
HinP1I GCGC 2 cut(s) 23, 29
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HindIII AAGCTT 1 cut(s) 1046
HinfI GANTC 2 cut(s) 487, 924
HpaI GTTAAC 1 cut(s) 520
HpaII CCGG 1 cut(s) 26
HphI GGTGA 3 cut(s) 405, 560, 920
Hpy166II GTNNAC 3 cut(s) 520, 784, 1073
Hpy188I TCNGA 2 cut(s) 189, 250
Hpy188III TCNNGA 4 cut(s) 64, 243, 283, 1012
Hpy8I GTNNAC 3 cut(s) 520, 784, 1073
Hpy99I CGWCG 1 cut(s) 764
HpyAV CCTTC 4 cut(s) 94, 99, 433, 784
HpyCH4III ACNGT 4 cut(s) 48, 179, 199, 358
HpyCH4IV ACGT 4 cut(s) 229, 798, 900, 1198
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 697, 725, 1001, 1124
HpyF3I CTNAG 1 cut(s) 701
HpySE526I ACGT 4 cut(s) 229, 798, 900, 1198
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 7 cut(s) 227, 562, 719, 790, 856, 1070, 1150
HspAI GCGC 2 cut(s) 23, 29
KasI GGCGCC 1 cut(s) 28
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
KspAI GTTAAC 1 cut(s) 520
KspI CCGCGG 1 cut(s) 588
Kzo9I GATC 6 cut(s) 184, 220, 245, 255, 529, 1103
LmnI GCTCC 1 cut(s) 1019
Lsp1109I GCAGC 4 cut(s) 109, 715, 718, 1016
LweI GCATC 2 cut(s) 304, 747
MaeI CTAG 1 cut(s) 539
MaeII ACGT 4 cut(s) 229, 798, 900, 1198
MaeIII GTNAC 5 cut(s) 116, 133, 199, 411, 987
MalI GATC 6 cut(s) 186, 222, 247, 257, 531, 1105
MboI GATC 6 cut(s) 184, 220, 245, 255, 529, 1103
MboII GAAGA 4 cut(s) 374, 377, 721, 1020
MfeI CAATTG 1 cut(s) 684
MhlI GDGCHC 2 cut(s) 1075, 1102
MlsI TGGCCA 1 cut(s) 951
MluCI AATT 7 cut(s) 399, 551, 684, 720, 744, 813, 819
MluNI TGGCCA 1 cut(s) 951
Mly113I GGCGCC 1 cut(s) 29
Mox20I TGGCCA 1 cut(s) 951
MreI CGCCGGCG 1 cut(s) 25
MroNI GCCGGC 1 cut(s) 25
MscI TGGCCA 1 cut(s) 951
MseI TTAA 3 cut(s) 59, 519, 624
MslI CAYNNNNRTG 1 cut(s) 473
Msp20I TGGCCA 1 cut(s) 951
MspA1I CMGCKG 1 cut(s) 587
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 767
MunI CAATTG 1 cut(s) 684
MvaI CCWGG 1 cut(s) 767
MvnI CGCG 3 cut(s) 587, 842, 1172
MwoI GCNNNNNNNGC 5 cut(s) 37, 697, 725, 1001, 1124
NaeI GCCGGC 1 cut(s) 27
NarI GGCGCC 1 cut(s) 29
NcoI CCATGG 1 cut(s) 558
NdeI CATATG 1 cut(s) 997
NdeII GATC 6 cut(s) 184, 220, 245, 255, 529, 1103
NgoMIV GCCGGC 1 cut(s) 25
NlaIII CATG 7 cut(s) 227, 562, 719, 790, 856, 1070, 1150
NlaIV GGNNCC 3 cut(s) 30, 450, 1021
NmuCI GTSAC 2 cut(s) 116, 411
NspI RCATGY 3 cut(s) 719, 790, 1150
PaqCI CACCTGC 1 cut(s) 424
PciI ACATGT 1 cut(s) 1146
PcsI WCGNNNNNNNCGW 2 cut(s) 331, 357
PdiI GCCGGC 1 cut(s) 27
PfeI GAWTC 2 cut(s) 487, 924
PflMI CCANNNNNTGG 2 cut(s) 11, 309
PkrI GCNGC 4 cut(s) 99, 730, 733, 1006
PluTI GGCGCC 1 cut(s) 32
PscI ACATGT 1 cut(s) 1146
Psp124BI GAGCTC 1 cut(s) 1102
Psp6I CCWGG 1 cut(s) 765
PspGI CCWGG 1 cut(s) 765
PspN4I GGNNCC 3 cut(s) 30, 450, 1021
PspPI GGNCC 1 cut(s) 275
RsaI GTAC 3 cut(s) 783, 797, 1197
RsaNI GTAC 3 cut(s) 782, 796, 1196
RseI CAYNNNNRTG 1 cut(s) 473
SacI GAGCTC 1 cut(s) 1102
SacII CCGCGG 1 cut(s) 588
SaqAI TTAA 3 cut(s) 59, 519, 624
SatI GCNGC 4 cut(s) 98, 729, 732, 1005
Sau3AI GATC 6 cut(s) 184, 220, 245, 255, 529, 1103
Sau96I GGNCC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 767
SduI GDGCHC 2 cut(s) 1075, 1102
SfaNI GCATC 2 cut(s) 304, 747
SfoI GGCGCC 1 cut(s) 30
Sfr303I CCGCGG 1 cut(s) 588
SgrAI CRCCGGYG 1 cut(s) 25
SgrBI CCGCGG 1 cut(s) 588
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 473
Sse9I AATT 7 cut(s) 399, 551, 684, 720, 744, 813, 819
SsiI CCGC 4 cut(s) 585, 587, 842, 1172
SspDI GGCGCC 1 cut(s) 28
SspI AATATT 2 cut(s) 268, 435
SspMI CTAG 1 cut(s) 539
SstI GAGCTC 1 cut(s) 1102
StyD4I CCNGG 1 cut(s) 765
StyI CCWWGG 2 cut(s) 558, 946
TaaI ACNGT 4 cut(s) 48, 179, 199, 358
TaiI ACGT 4 cut(s) 232, 801, 903, 1201
TaqI TCGA 5 cut(s) 258, 504, 510, 1096, 1102
TaqII GACCGA 1 cut(s) 364
TasI AATT 7 cut(s) 399, 551, 684, 720, 744, 813, 819
TatI WGTACW 1 cut(s) 781
TfiI GAWTC 2 cut(s) 487, 924
Tru1I TTAA 3 cut(s) 59, 519, 624
Tru9I TTAA 3 cut(s) 59, 519, 624
TscAI CASTG 5 cut(s) 39, 53, 361, 702, 943
TseFI GTSAC 2 cut(s) 116, 411
TseI GCWGC 4 cut(s) 97, 728, 731, 1004
Tsp45I GTSAC 2 cut(s) 116, 411
TspDTI ATGAA 5 cut(s) 311, 479, 841, 1020, 1141
TspRI CASTG 5 cut(s) 39, 53, 361, 702, 943
Van91I CCANNNNNTGG 2 cut(s) 11, 309
VneI GTGCAC 1 cut(s) 1071
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 1 cut(s) 551
XceI RCATGY 3 cut(s) 719, 790, 1150
XcmI CCANNNNNNNNNTGG 1 cut(s) 702
XspI CTAG 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.