Rh6CG417900

homogentisate phytyltransferase 1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0017256
Physical Location & Seq
Forward (+)
60154149 .. 60168267
14119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG417900.1

Sequence Viewer

Length: 1179 bp
ATGCCCCTCCTTCAAGTAGTAGCGCCGGCGCCAGTGAAGCTAAGACAGTGCAACTTATTAATCAAGAACAAAAGCAACAAGCCATTGCCCTTCCCTTCCCTGCAGCCACATTATCGTTATTATTATTCATCATCTTTAGGCGGAAGCATTTTTACTGCCAATGCAAATCCAAATCTAAATATTCCAAACTGTGATGATCGGCAAATCACAGTAACCAAAAGAAGAGGAGACCATGGTCGTAAAAAACATAACGGGGCACCATTGTCCTATGCCTCACAATCACGATCAGAGAAGATCGATGTTAATATTGATGGACAACCCATGGATAGATTTCAGATTGGCGGCGGCTTTTCTAAACAATGGGACGCTTTTCATCGCTTTTGTCGTCCTCATACTGTAATCGGCACTGTTATAGGTATATTATCGGTCTCTCTTCTTCCATTGGAACAAATTGGGGACTTGTCTCCTGCATTTTTTATAGGAATACTGAAGGCATTGGTTCCCTCGGTGTTAATGAACATCTATGTGGTGGGATTGAATCAAGTGTTTGATGTCGAAATAGACAAGGTTAACAAACCTGATCTCCCACTAGCTTCTGGTGAATTCTCTATGGGAACTGGGATCACAATCGTTTCCACAGTTTTGCTGATGAGTTTTGCTATGGGAGTTATGTTCAAGTCTCCACCTCTTTTCTCTGCCCTTGCCATTAGCTTTTTTCTTGGAAGTGCTTATTCCATTGAGCATCCGCTGCTCAGGTGGAAGAGACATGCAATTCTTGCTGCTGCTTGCATCCTAATTGTGAGAGCTGTCGTGGTCCAGCTTGCCTTCTTTGTACACATCCAGAAGTATGTGCTTGGTAGAGAAATTTCAATTACAAGACCATTGGTATTTGCAGTGGTTTTCATGTGCATCTTCTCCTCTGTTATTGCGTTGTTCAAGGATATACCTGATGTGGATGGTGATAGAGATTTTGGTATCCAATCTTTCAGTGTCAACCTTGGGCAAGAAAAGCCTTCACACAAGTCCTTCATCATCAAGAAGAAGCTTGGCAAGAAGACGAGGCAGAACAGGCCCATCCCTCACTGGATCCGTCTCAGGACTGACAACAAAATCAGGTCTCCCAAATGCTCCTTCTTCTTGTTTTCAAGTAATTATGTTGTCAGCTTCTCAGATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 ko01100 ko01110 map00130 map01100 map01110
Pfam Domains
Protein Families
UbiA

Protein Analysis

392

Amino Acids

43.71

Weight (kDa)

9.87

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 151 - 337 2.8e-30 UbiA prenyltransferase family
Ribosomal_L39 PF00832 345 - 373 3.6e-10 Ribosomal L39 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017256)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40790
malus_domestica MD08G1060100.v1.1
prunus_persica Prupe.1G390700_v2.0.a1
pyrus_communis pycom08g05010
rosa_chinensis RchiOBHm_Chr6g0299791
rosa_laevigata RLG00000011387
rosa_roxburghii Rroxscaffold_7G00168360
rosa_rugosa Rorug06G0292300
rosa_samantha Rh6AG403400 Rh6BG411800 Rh6CG417900 Rh6DG404700
rosa_wichuraiana Rw6G035300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 28, 256
AciI CCGC 4 cut(s) 141, 342, 345, 746
AclWI GGATC 3 cut(s) 629, 1081, 1094
AcsI RAATTY 2 cut(s) 602, 864
AcuI CTGAAG 1 cut(s) 509
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 1 cut(s) 834
AgsI TTSAA 6 cut(s) 14, 538, 676, 870, 937, 1146
AjuI GAANNNNNNNTTGG 2 cut(s) 1115, 1147
AluBI AGCT 7 cut(s) 40, 593, 711, 806, 820, 1045, 1164
AluI AGCT 7 cut(s) 40, 593, 711, 806, 820, 1045, 1164
Alw26I GTCTC 7 cut(s) 222, 433, 468, 684, 757, 1097, 1122
AlwI GGATC 3 cut(s) 629, 1081, 1094
AoxI GGCC 1 cut(s) 1070
ApeKI GCWGC 4 cut(s) 103, 748, 779, 782
ApoI RAATTY 2 cut(s) 602, 864
AseI ATTAAT 1 cut(s) 59
AspLEI GCGC 2 cut(s) 25, 31
AspS9I GGNCC 2 cut(s) 814, 1071
AsuHPI GGTGA 2 cut(s) 611, 971
AvaII GGWCC 1 cut(s) 814
BaeGI GKGCMC 1 cut(s) 259
BamHI GGATCC 1 cut(s) 1086
BanI GGYRCC 2 cut(s) 28, 256
BarI GAAGNNNNNNTAC 2 cut(s) 136, 168
BbsI GAAGAC 1 cut(s) 1061
BbvI GCAGC 4 cut(s) 115, 735, 766, 769
BccI CCATC 3 cut(s) 305, 950, 1082
BciVI GTATCC 1 cut(s) 986
BcoDI GTCTC 7 cut(s) 222, 433, 468, 684, 757, 1097, 1122
BfaI CTAG 1 cut(s) 590
BfmI CTRYAG 1 cut(s) 101
BfoI RGCGCY 2 cut(s) 26, 32
BfuI GTATCC 1 cut(s) 986
BisI GCNGC 6 cut(s) 104, 343, 346, 749, 780, 783
BlsI GCNGC 6 cut(s) 105, 344, 347, 750, 781, 784
Bme18I GGWCC 1 cut(s) 814
BmgT120I GGNCC 2 cut(s) 814, 1071
BmiI GGNNCC 4 cut(s) 30, 258, 501, 1088
BmrI ACTGGG 1 cut(s) 627
BmsI GCATC 4 cut(s) 751, 798, 918, 1162
BmuI ACTGGG 1 cut(s) 627
BoxI GACNNNNGTC 1 cut(s) 234
BpiI GAAGAC 1 cut(s) 1061
Bpu10I CCTNAGC 1 cut(s) 752
Bsa29I ATCGAT 1 cut(s) 297
BsaBI GATNNNNATC 1 cut(s) 626
BsaHI GRCGYC 1 cut(s) 29
BsaI GGTCTC 3 cut(s) 222, 433, 1122
BsaJI CCNNGG 4 cut(s) 232, 321, 504, 997
BsaXI ACNNNNNCTCC 2 cut(s) 567, 597
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 3 cut(s) 32, 622, 1088
Bse3DI GCAATG 1 cut(s) 83
Bse8I GATNNNNATC 1 cut(s) 626
BseCI ATCGAT 1 cut(s) 297
BseDI CCNNGG 4 cut(s) 232, 321, 504, 997
BseGI GGATG 5 cut(s) 742, 789, 837, 961, 1074
BseJI GATNNNNATC 1 cut(s) 626
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 2 cut(s) 766, 1108
BseNI ACTGG 3 cut(s) 32, 622, 1088
BseRI GAGGAG 2 cut(s) 240, 907
BseSI GKGCMC 1 cut(s) 259
BseXI GCAGC 4 cut(s) 115, 735, 766, 769
BshFI GGCC 1 cut(s) 1072
BshNI GGYRCC 2 cut(s) 28, 256
BshVI ATCGAT 1 cut(s) 297
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 2 cut(s) 377, 470
BsmAI GTCTC 7 cut(s) 222, 433, 468, 684, 757, 1097, 1122
BsmBI CGTCTC 1 cut(s) 1097
BsmFI GGGAC 2 cut(s) 377, 470
BsnI GGCC 1 cut(s) 1072
Bso31I GGTCTC 3 cut(s) 222, 433, 1122
Bsp1286I GDGCHC 1 cut(s) 259
Bsp1407I TGTACA 1 cut(s) 832
Bsp143I GATC 6 cut(s) 196, 284, 294, 580, 621, 1086
Bsp19I CCATGG 2 cut(s) 232, 321
BspACI CCGC 4 cut(s) 141, 342, 345, 746
BspANI GGCC 1 cut(s) 1072
BspCNI CTCAG 2 cut(s) 765, 1107
BspDI ATCGAT 1 cut(s) 297
BspLI GGNNCC 4 cut(s) 30, 258, 501, 1088
BspMAI CTGCAG 1 cut(s) 105
BspPI GGATC 3 cut(s) 629, 1081, 1094
BspT107I GGYRCC 2 cut(s) 28, 256
BspTNI GGTCTC 3 cut(s) 222, 433, 1122
BsrDI GCAATG 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 25
BsrGI TGTACA 1 cut(s) 832
BsrI ACTGG 3 cut(s) 32, 622, 1088
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 4 cut(s) 232, 321, 504, 997
BssMI GATC 6 cut(s) 196, 284, 294, 580, 621, 1086
BssNI GRCGYC 1 cut(s) 29
BssT1I CCWWGG 3 cut(s) 232, 321, 997
Bst4CI ACNGT 6 cut(s) 48, 191, 211, 397, 409, 640
Bst6I CTCTTC 3 cut(s) 217, 438, 755
BstACI GRCGYC 1 cut(s) 29
BstAPI GCANNNNNTGC 2 cut(s) 748, 776
BstAUI TGTACA 1 cut(s) 832
BstC8I GCNNGC 3 cut(s) 27, 787, 822
BstDEI CTNAG 4 cut(s) 41, 752, 1094, 1168
BstDSI CCRYGG 2 cut(s) 232, 321
BstF5I GGATG 5 cut(s) 742, 789, 837, 961, 1074
BstH2I RGCGCY 2 cut(s) 26, 32
BstHHI GCGC 2 cut(s) 25, 31
BstKTI GATC 6 cut(s) 199, 287, 297, 583, 624, 1089
BstMAI GTCTC 7 cut(s) 222, 433, 468, 684, 757, 1097, 1122
BstMBI GATC 6 cut(s) 196, 284, 294, 580, 621, 1086
BstMWI GCNNNNNNNGC 5 cut(s) 37, 748, 776, 1009, 1069
BstNSI RCATGY 1 cut(s) 770
BstPAI GACNNNNGTC 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 101
BstSLI GKGCMC 1 cut(s) 259
BstV1I GCAGC 4 cut(s) 115, 735, 766, 769
BstV2I GAAGAC 1 cut(s) 1061
BstX2I RGATCY 1 cut(s) 1086
BstYI RGATCY 1 cut(s) 1086
Bsu15I ATCGAT 1 cut(s) 297
BsuI GTATCC 1 cut(s) 986
BsuRI GGCC 1 cut(s) 1072
BsuTUI ATCGAT 1 cut(s) 297
BtgI CCRYGG 2 cut(s) 232, 321
BtgZI GCGATG 1 cut(s) 359
BtsCI GGATG 5 cut(s) 742, 789, 837, 961, 1074
BtsI GCAGTG 1 cut(s) 900
BtsIMutI CAGTG 6 cut(s) 39, 53, 405, 900, 994, 1081
Cac8I GCNNGC 3 cut(s) 27, 787, 822
CfoI GCGC 2 cut(s) 25, 31
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 814, 1071
ClaI ATCGAT 1 cut(s) 297
CseI GACGC 1 cut(s) 374
Csp6I GTAC 1 cut(s) 833
CviAII CATG 4 cut(s) 233, 322, 767, 904
CviQI GTAC 1 cut(s) 833
DdeI CTNAG 4 cut(s) 41, 752, 1094, 1168
DinI GGCGCC 1 cut(s) 30
DpnI GATC 6 cut(s) 198, 286, 296, 582, 623, 1088
DpnII GATC 6 cut(s) 196, 284, 294, 580, 621, 1086
Eam1104I CTCTTC 3 cut(s) 217, 438, 755
EarI CTCTTC 3 cut(s) 217, 438, 755
EciI GGCGGA 1 cut(s) 156
Eco130I CCWWGG 3 cut(s) 232, 321, 997
Eco31I GGTCTC 3 cut(s) 222, 433, 1122
Eco47I GGWCC 1 cut(s) 814
Eco57I CTGAAG 1 cut(s) 509
EcoRI GAATTC 1 cut(s) 602
EcoT14I CCWWGG 3 cut(s) 232, 321, 997
EgeI GGCGCC 1 cut(s) 30
EheI GGCGCC 1 cut(s) 30
ErhI CCWWGG 3 cut(s) 232, 321, 997
Esp3I CGTCTC 1 cut(s) 1097
FaeI CATG 4 cut(s) 236, 325, 770, 907
FaqI GGGAC 2 cut(s) 377, 470
FatI CATG 4 cut(s) 232, 321, 766, 903
Fnu4HI GCNGC 6 cut(s) 104, 343, 346, 749, 780, 783
FokI GGATG 5 cut(s) 729, 776, 824, 968, 1061
Fsp4HI GCNGC 6 cut(s) 104, 343, 346, 749, 780, 783
FspBI CTAG 1 cut(s) 590
GlaI GCGC 2 cut(s) 24, 30
GluI GCNGC 6 cut(s) 104, 343, 346, 749, 780, 783
HaeII RGCGCY 2 cut(s) 26, 32
HaeIII GGCC 1 cut(s) 1072
HapII CCGG 1 cut(s) 26
HgaI GACGC 1 cut(s) 374
HhaI GCGC 2 cut(s) 25, 31
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 4 cut(s) 236, 325, 770, 907
Hin6I GCGC 2 cut(s) 23, 29
HinP1I GCGC 2 cut(s) 23, 29
HincII GTYRAC 2 cut(s) 571, 994
HindII GTYRAC 2 cut(s) 571, 994
HindIII AAGCTT 1 cut(s) 1043
HinfI GANTC 1 cut(s) 538
HpaI GTTAAC 1 cut(s) 571
HpaII CCGG 1 cut(s) 26
HphI GGTGA 2 cut(s) 611, 971
Hpy166II GTNNAC 3 cut(s) 571, 835, 994
Hpy188I TCNGA 3 cut(s) 289, 336, 1171
Hpy188III TCNNGA 5 cut(s) 64, 282, 841, 1036, 1096
Hpy8I GTNNAC 3 cut(s) 571, 835, 994
HpyAV CCTTC 8 cut(s) 20, 100, 105, 484, 835, 1023, 1036, 1141
HpyCH4III ACNGT 6 cut(s) 48, 191, 211, 397, 409, 640
HpyCH4V TGCA 8 cut(s) 51, 103, 164, 470, 770, 789, 893, 909
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 748, 776, 1009, 1069
HpyF3I CTNAG 4 cut(s) 41, 752, 1094, 1168
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 4 cut(s) 236, 325, 770, 907
HspAI GCGC 2 cut(s) 23, 29
KasI GGCGCC 1 cut(s) 28
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
KspAI GTTAAC 1 cut(s) 571
Kzo9I GATC 6 cut(s) 196, 284, 294, 580, 621, 1086
LmnI GCTCC 1 cut(s) 1133
Lsp1109I GCAGC 4 cut(s) 115, 735, 766, 769
LweI GCATC 4 cut(s) 751, 798, 918, 1162
MaeI CTAG 1 cut(s) 590
MaeIII GTNAC 1 cut(s) 211
MalI GATC 6 cut(s) 198, 286, 296, 582, 623, 1088
MboI GATC 6 cut(s) 196, 284, 294, 580, 621, 1086
MboII GAAGA 9 cut(s) 234, 304, 425, 428, 772, 904, 1051, 1066, 1126
MflI RGATCY 1 cut(s) 1086
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 7 cut(s) 450, 602, 771, 795, 864, 870, 1150
Mly113I GGCGCC 1 cut(s) 29
MnlI CCTC 9 cut(s) 17, 218, 283, 399, 514, 696, 928, 1053, 1089
MreI CGCCGGCG 1 cut(s) 25
MroNI GCCGGC 1 cut(s) 25
MseI TTAA 5 cut(s) 59, 303, 512, 570, 1177
MslI CAYNNNNRTG 1 cut(s) 524
MspA1I CMGCKG 1 cut(s) 748
MspI CCGG 1 cut(s) 26
MwoI GCNNNNNNNGC 5 cut(s) 37, 748, 776, 1009, 1069
NaeI GCCGGC 1 cut(s) 27
NarI GGCGCC 1 cut(s) 29
NcoI CCATGG 2 cut(s) 232, 321
NdeII GATC 6 cut(s) 196, 284, 294, 580, 621, 1086
NgoMIV GCCGGC 1 cut(s) 25
NlaIII CATG 4 cut(s) 236, 325, 770, 907
NlaIV GGNNCC 4 cut(s) 30, 258, 501, 1088
NspI RCATGY 1 cut(s) 770
PcsI WCGNNNNNNNCGW 1 cut(s) 382
PdiI GCCGGC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 538
PkrI GCNGC 6 cut(s) 105, 344, 347, 750, 781, 784
PluTI GGCGCC 1 cut(s) 32
PshAI GACNNNNGTC 1 cut(s) 234
PshBI ATTAAT 1 cut(s) 59
PspN4I GGNNCC 4 cut(s) 30, 258, 501, 1088
PspPI GGNCC 2 cut(s) 814, 1071
PstI CTGCAG 1 cut(s) 105
PsuI RGATCY 1 cut(s) 1086
RsaI GTAC 1 cut(s) 834
RsaNI GTAC 1 cut(s) 833
RseI CAYNNNNRTG 1 cut(s) 524
SaqAI TTAA 5 cut(s) 59, 303, 512, 570, 1177
SatI GCNGC 6 cut(s) 104, 343, 346, 749, 780, 783
Sau3AI GATC 6 cut(s) 196, 284, 294, 580, 621, 1086
Sau96I GGNCC 2 cut(s) 814, 1071
SduI GDGCHC 1 cut(s) 259
SfaNI GCATC 4 cut(s) 751, 798, 918, 1162
SfcI CTRYAG 1 cut(s) 101
SfoI GGCGCC 1 cut(s) 30
SgrAI CRCCGGYG 1 cut(s) 25
SinI GGWCC 1 cut(s) 814
SmiMI CAYNNNNRTG 1 cut(s) 524
Sse9I AATT 7 cut(s) 450, 602, 771, 795, 864, 870, 1150
SsiI CCGC 4 cut(s) 141, 342, 345, 746
SspDI GGCGCC 1 cut(s) 28
SspI AATATT 2 cut(s) 181, 307
SspMI CTAG 1 cut(s) 590
StyI CCWWGG 3 cut(s) 232, 321, 997
TaaI ACNGT 6 cut(s) 48, 191, 211, 397, 409, 640
TaqI TCGA 2 cut(s) 297, 555
TaqII GACCGA 1 cut(s) 415
TasI AATT 7 cut(s) 450, 602, 771, 795, 864, 870, 1150
TatI WGTACW 1 cut(s) 832
TauI GCSGC 2 cut(s) 345, 348
TfiI GAWTC 1 cut(s) 538
Tru1I TTAA 5 cut(s) 59, 303, 512, 570, 1177
Tru9I TTAA 5 cut(s) 59, 303, 512, 570, 1177
TscAI CASTG 6 cut(s) 39, 53, 412, 900, 994, 1088
TseI GCWGC 4 cut(s) 103, 748, 779, 782
TspDTI ATGAA 5 cut(s) 117, 362, 530, 892, 1018
TspGWI ACGGA 1 cut(s) 1079
TspRI CASTG 6 cut(s) 39, 53, 412, 900, 994, 1088
VpaK11BI GGWCC 1 cut(s) 814
VspI ATTAAT 1 cut(s) 59
XapI RAATTY 2 cut(s) 602, 864
XceI RCATGY 1 cut(s) 770
XspI CTAG 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.