Prupe.1G390700_v2.0.a1

homogentisate phytyltransferase 1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017256
Physical Location & Seq
Reverse (-)
34835698 .. 34838073
2376 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G390700.1

Sequence Viewer

Length: 1128 bp
ATGCTACTACTTCAAGTGCCAGTGAAGCCAACAACACATTGCAACGTAATCAAGAAGAAGCCCTTGCCGCAATATTGTTCCAGAAACTTATCATCTCTAGCCACCAATGCCAATCCAAACTATGATCAGAAGATCACAGTGACCACCAGAAGAAACCCTAGTAAAAGATTCAAGAAATTTTATTGCCAACCTGTTTGTTTTCAACATGGGGGTTATGCTTCATCATCAAAACCAAAGAATGATGGTGATCATTTTCTGACTGGCCTTTGTAAACAATGGGATGCATTTCATCGCTTTTGTCGTCCTCACACTGTAATTGGCACTGTTATAGGAATCTCATCGGTCTCTCTTCTTCCATTAGAAAATGTTACTGACCTGTCCTCTGCATTTTTCATAGGACTATTGAAGGCATTGGCGCCATCGATCCTAATGAACATCTATGTGGTGGGATTGAATCAATTGTTTGACGTCGAAATCGACAAGGTTAACAAACCTGAGCTCCCTCTTGCTTCTGGTGAATTCTCTATGGGAACTGGGATCACAATTGTTTCCACAGTTTTGTTGATGAGTTTTGCCATGGGAGTTATGTTTAATTCTCCACCGTTGTTTTGTGCCCTTCTCATCAGTTTTCTGCTTGGAAGTGTTTATTCCATTGAACTTCCTTTGCTGCGGTGGAAGAGACATGCATTTCTGGCTGCTACTTGCATCCTAATTGTGAGGGCCATCGTTGTCCAGCTTGCCTTCTATGTACACATCCAGAAATTTGTACTTGGTAGACCTGTTAAGATGACAAGATCCTTGGCATTTGCGGTGGTTTTCATGTGCATCTTCTCCTCTGTTATTGCGTTATTCAAGGATATACCTGATGTGGATGGTGATAGATATTATGGCATTCAATCCTTCAGTGTCAGCCTTGGACAAGAAAAGGTATATTGGTTTTGTGTAAATATGCTGTTAATTGCATACGGGGCTGCCCTGGTGATACTAGGCCACACTGCACTCGCTTCCCTTCTTTGGCTCCGAGCTCGATCTGTTGATATAGCCGATAAAGCCTCTCTAACTTCTTTTTACATGTTCATCTGGAAGCTCTTCTATGCCGAGTACTTGCTCATTCCTTTTGTACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 ko01100 ko01110 map00130 map01100 map01110
Pfam Domains
Protein Families
UbiA

Protein Analysis

376

Amino Acids

42.0

Weight (kDa)

9.44

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017256)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40790
malus_domestica MD08G1060100.v1.1
prunus_persica Prupe.1G390700_v2.0.a1
pyrus_communis pycom08g05010
rosa_chinensis RchiOBHm_Chr6g0299791
rosa_laevigata RLG00000011387
rosa_roxburghii Rroxscaffold_7G00168360
rosa_rugosa Rorug06G0292300
rosa_samantha Rh6AG403400 Rh6BG411800 Rh6CG417900 Rh6DG404700
rosa_wichuraiana Rw6G035300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 471
AccB1I GGYRCC 1 cut(s) 415
AccI GTMKAC 1 cut(s) 775
AciI CCGC 3 cut(s) 68, 670, 809
AclWI GGATC 3 cut(s) 418, 545, 789
AcsI RAATTY 3 cut(s) 176, 518, 761
AcuI CTGAAG 1 cut(s) 886
AcyI GRCGYC 2 cut(s) 416, 468
AfaI GTAC 4 cut(s) 750, 768, 1103, 1122
AfiI CCNNNNNNNGG 1 cut(s) 1014
AflIII ACRYGT 1 cut(s) 1071
AgsI TTSAA 8 cut(s) 14, 172, 203, 406, 454, 656, 853, 896
AjnI CCWGG 1 cut(s) 975
AluBI AGCT 4 cut(s) 499, 736, 1025, 1087
AluI AGCT 4 cut(s) 499, 736, 1025, 1087
Alw21I GWGCWC 2 cut(s) 501, 1027
Alw26I GTCTC 2 cut(s) 349, 673
AlwI GGATC 3 cut(s) 418, 545, 789
AoxI GGCC 3 cut(s) 262, 720, 988
ApeKI GCWGC 3 cut(s) 667, 695, 971
ApoI RAATTY 3 cut(s) 176, 518, 761
Asp700I GAANNNNTTC 1 cut(s) 1088
AspLEI GCGC 1 cut(s) 418
AspS9I GGNCC 1 cut(s) 720
AsuHPI GGTGA 4 cut(s) 257, 527, 887, 991
BaeGI GKGCMC 1 cut(s) 616
BanI GGYRCC 1 cut(s) 415
BanII GRGCYC 2 cut(s) 501, 1027
Bbv12I GWGCWC 2 cut(s) 501, 1027
BbvI GCAGC 3 cut(s) 654, 682, 958
BccI CCATC 4 cut(s) 236, 427, 731, 866
BciT130I CCWGG 1 cut(s) 977
BclI TGATCA 2 cut(s) 124, 247
BcoDI GTCTC 2 cut(s) 349, 673
BfaI CTAG 3 cut(s) 98, 159, 986
BfoI RGCGCY 1 cut(s) 419
BisI GCNGC 4 cut(s) 68, 668, 696, 972
BlsI GCNGC 4 cut(s) 69, 669, 697, 973
BmcAI AGTACT 1 cut(s) 1103
Bme1390I CCNGG 1 cut(s) 977
BmgT120I GGNCC 1 cut(s) 720
BmiI GGNNCC 2 cut(s) 417, 1019
BmrFI CCNGG 1 cut(s) 977
BmrI ACTGGG 1 cut(s) 543
BmsI GCATC 3 cut(s) 271, 714, 834
BmuI ACTGGG 1 cut(s) 543
Bpu10I CCTNAGC 1 cut(s) 495
Bsa29I ATCGAT 1 cut(s) 422
BsaBI GATNNNNATC 1 cut(s) 246
BsaHI GRCGYC 2 cut(s) 416, 468
BsaI GGTCTC 1 cut(s) 349
BsaJI CCNNGG 4 cut(s) 576, 798, 913, 975
BsaXI ACNNNNNCTCC 2 cut(s) 483, 513
Bsc4I CCNNNNNNNGG 1 cut(s) 1014
Bse1I ACTGG 3 cut(s) 20, 265, 538
Bse3DI GCAATG 1 cut(s) 37
Bse8I GATNNNNATC 1 cut(s) 246
BseBI CCWGG 1 cut(s) 977
BseCI ATCGAT 1 cut(s) 422
BseDI CCNNGG 4 cut(s) 576, 798, 913, 975
BseGI GGATG 4 cut(s) 286, 705, 753, 877
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 1014
BseMI GCAATG 1 cut(s) 37
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 3 cut(s) 20, 265, 538
BseRI GAGGAG 1 cut(s) 823
BseSI GKGCMC 1 cut(s) 616
BseXI GCAGC 3 cut(s) 654, 682, 958
BsgI GTGCAG 1 cut(s) 981
BshFI GGCC 3 cut(s) 264, 722, 990
BshNI GGYRCC 1 cut(s) 415
BshVI ATCGAT 1 cut(s) 422
BsiHKAI GWGCWC 2 cut(s) 501, 1027
BslI CCNNNNNNNGG 1 cut(s) 1014
BsmAI GTCTC 2 cut(s) 349, 673
BsmI GAATGC 1 cut(s) 891
BsnI GGCC 3 cut(s) 264, 722, 990
Bso31I GGTCTC 1 cut(s) 349
Bsp1286I GDGCHC 3 cut(s) 501, 616, 1027
Bsp1407I TGTACA 1 cut(s) 748
Bsp143I GATC 7 cut(s) 124, 132, 247, 423, 537, 794, 1028
Bsp19I CCATGG 1 cut(s) 576
BspACI CCGC 3 cut(s) 68, 670, 809
BspANI GGCC 3 cut(s) 264, 722, 990
BspCNI CTCAG 1 cut(s) 487
BspDI ATCGAT 1 cut(s) 422
BspLI GGNNCC 2 cut(s) 417, 1019
BspPI GGATC 3 cut(s) 418, 545, 789
BspQI GCTCTTC 1 cut(s) 1094
BspT107I GGYRCC 1 cut(s) 415
BspTNI GGTCTC 1 cut(s) 349
BsrDI GCAATG 1 cut(s) 37
BsrGI TGTACA 1 cut(s) 748
BsrI ACTGG 3 cut(s) 20, 265, 538
BssECI CCNNGG 4 cut(s) 576, 798, 913, 975
BssMI GATC 7 cut(s) 124, 132, 247, 423, 537, 794, 1028
BssNI GRCGYC 2 cut(s) 416, 468
BssT1I CCWWGG 3 cut(s) 576, 798, 913
Bst2UI CCWGG 1 cut(s) 977
Bst4CI ACNGT 5 cut(s) 139, 313, 325, 556, 603
Bst6I CTCTTC 3 cut(s) 354, 671, 1094
BstACI GRCGYC 2 cut(s) 416, 468
BstAUI TGTACA 1 cut(s) 748
BstC8I GCNNGC 1 cut(s) 738
BstDEI CTNAG 1 cut(s) 495
BstDSI CCRYGG 1 cut(s) 576
BstF5I GGATG 4 cut(s) 286, 705, 753, 877
BstH2I RGCGCY 1 cut(s) 419
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 7 cut(s) 127, 135, 250, 426, 540, 797, 1031
BstMAI GTCTC 2 cut(s) 349, 673
BstMBI GATC 7 cut(s) 124, 132, 247, 423, 537, 794, 1028
BstMWI GCNNNNNNNGC 6 cut(s) 25, 67, 107, 692, 968, 1049
BstNI CCWGG 1 cut(s) 977
BstNSI RCATGY 2 cut(s) 686, 1075
BstSCI CCNGG 1 cut(s) 975
BstSLI GKGCMC 1 cut(s) 616
BstV1I GCAGC 3 cut(s) 654, 682, 958
BstX2I RGATCY 1 cut(s) 794
BstYI RGATCY 1 cut(s) 794
Bsu15I ATCGAT 1 cut(s) 422
BsuRI GGCC 3 cut(s) 264, 722, 990
BsuTUI ATCGAT 1 cut(s) 422
BtgI CCRYGG 1 cut(s) 576
BtgZI GCGATG 1 cut(s) 275
BtsCI GGATG 4 cut(s) 286, 705, 753, 877
BtsI GCAGTG 1 cut(s) 993
BtsIMutI CAGTG 6 cut(s) 27, 144, 309, 321, 910, 993
Cac8I GCNNGC 1 cut(s) 738
CfoI GCGC 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 720
ClaI ATCGAT 1 cut(s) 422
Csp6I GTAC 4 cut(s) 749, 767, 1102, 1121
CviAII CATG 5 cut(s) 206, 577, 683, 820, 1072
CviQI GTAC 4 cut(s) 749, 767, 1102, 1121
DdeI CTNAG 1 cut(s) 495
DinI GGCGCC 1 cut(s) 417
DpnI GATC 7 cut(s) 126, 134, 249, 425, 539, 796, 1030
DpnII GATC 7 cut(s) 124, 132, 247, 423, 537, 794, 1028
Eam1104I CTCTTC 3 cut(s) 354, 671, 1094
EarI CTCTTC 3 cut(s) 354, 671, 1094
Ecl136II GAGCTC 2 cut(s) 499, 1025
Eco130I CCWWGG 3 cut(s) 576, 798, 913
Eco24I GRGCYC 2 cut(s) 501, 1027
Eco31I GGTCTC 1 cut(s) 349
Eco53kI GAGCTC 2 cut(s) 499, 1025
Eco57I CTGAAG 1 cut(s) 886
EcoICRI GAGCTC 2 cut(s) 499, 1025
EcoRI GAATTC 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 975
EcoT14I CCWWGG 3 cut(s) 576, 798, 913
EcoT22I ATGCAT 2 cut(s) 286, 688
EcoT38I GRGCYC 2 cut(s) 501, 1027
EgeI GGCGCC 1 cut(s) 417
EheI GGCGCC 1 cut(s) 417
ErhI CCWWGG 3 cut(s) 576, 798, 913
FaeI CATG 5 cut(s) 209, 580, 686, 823, 1075
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FatI CATG 5 cut(s) 205, 576, 682, 819, 1071
FbaI TGATCA 2 cut(s) 124, 247
FblI GTMKAC 1 cut(s) 775
Fnu4HI GCNGC 4 cut(s) 68, 668, 696, 972
FokI GGATG 4 cut(s) 293, 692, 740, 884
FriOI GRGCYC 2 cut(s) 501, 1027
Fsp4HI GCNGC 4 cut(s) 68, 668, 696, 972
FspBI CTAG 3 cut(s) 98, 159, 986
GlaI GCGC 1 cut(s) 417
GluI GCNGC 4 cut(s) 68, 668, 696, 972
HaeII RGCGCY 1 cut(s) 419
HaeIII GGCC 3 cut(s) 264, 722, 990
HhaI GCGC 1 cut(s) 418
Hin1I GRCGYC 2 cut(s) 416, 468
Hin1II CATG 5 cut(s) 209, 580, 686, 823, 1075
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HinfI GANTC 3 cut(s) 168, 333, 454
HpaI GTTAAC 1 cut(s) 487
HphI GGTGA 4 cut(s) 257, 527, 887, 991
Hpy166II GTNNAC 4 cut(s) 272, 487, 751, 776
Hpy188I TCNGA 3 cut(s) 129, 258, 1022
Hpy188III TCNNGA 5 cut(s) 52, 81, 172, 757, 1081
Hpy8I GTNNAC 4 cut(s) 272, 487, 751, 776
Hpy99I CGWCG 1 cut(s) 473
HpyAV CCTTC 5 cut(s) 400, 626, 751, 910, 1019
HpyCH4III ACNGT 5 cut(s) 139, 313, 325, 556, 603
HpyCH4IV ACGT 2 cut(s) 45, 468
HpyCH4V TGCA 8 cut(s) 42, 284, 386, 686, 705, 825, 962, 998
HpyF10VI GCNNNNNNNGC 6 cut(s) 25, 67, 107, 692, 968, 1049
HpyF3I CTNAG 1 cut(s) 495
HpySE526I ACGT 2 cut(s) 45, 468
Hsp92I GRCGYC 2 cut(s) 416, 468
Hsp92II CATG 5 cut(s) 209, 580, 686, 823, 1075
HspAI GCGC 1 cut(s) 416
KasI GGCGCC 1 cut(s) 415
Ksp22I TGATCA 2 cut(s) 124, 247
KspAI GTTAAC 1 cut(s) 487
Kzo9I GATC 7 cut(s) 124, 132, 247, 423, 537, 794, 1028
LguI GCTCTTC 1 cut(s) 1094
LmnI GCTCC 2 cut(s) 504, 1023
Lsp1109I GCAGC 3 cut(s) 654, 682, 958
LweI GCATC 3 cut(s) 271, 714, 834
MaeI CTAG 3 cut(s) 98, 159, 986
MaeII ACGT 2 cut(s) 45, 468
MaeIII GTNAC 2 cut(s) 139, 367
MalI GATC 7 cut(s) 126, 134, 249, 425, 539, 796, 1030
MboI GATC 7 cut(s) 124, 132, 247, 423, 537, 794, 1028
MboII GAAGA 8 cut(s) 67, 142, 162, 341, 344, 688, 820, 1081
MfeI CAATTG 2 cut(s) 458, 543
MflI RGATCY 1 cut(s) 794
MhlI GDGCHC 3 cut(s) 501, 616, 1027
MluCI AATT 9 cut(s) 176, 315, 458, 518, 543, 592, 711, 761, 957
Mly113I GGCGCC 1 cut(s) 416
MnlI CCTC 6 cut(s) 315, 391, 513, 711, 844, 1063
Mph1103I ATGCAT 2 cut(s) 286, 688
MroXI GAANNNNTTC 1 cut(s) 1088
MseI TTAA 4 cut(s) 486, 591, 783, 956
MslI CAYNNNNRTG 1 cut(s) 440
MspR9I CCNGG 1 cut(s) 977
MunI CAATTG 2 cut(s) 458, 543
Mva1269I GAATGC 1 cut(s) 891
MvaI CCWGG 1 cut(s) 977
MwoI GCNNNNNNNGC 6 cut(s) 25, 67, 107, 692, 968, 1049
NarI GGCGCC 1 cut(s) 416
NcoI CCATGG 1 cut(s) 576
NdeII GATC 7 cut(s) 124, 132, 247, 423, 537, 794, 1028
NlaIII CATG 5 cut(s) 209, 580, 686, 823, 1075
NlaIV GGNNCC 2 cut(s) 417, 1019
NmeAIII GCCGAG 1 cut(s) 1123
NmuCI GTSAC 1 cut(s) 139
NsiI ATGCAT 2 cut(s) 286, 688
NspI RCATGY 2 cut(s) 686, 1075
PciI ACATGT 1 cut(s) 1071
PciSI GCTCTTC 1 cut(s) 1094
PcsI WCGNNNNNNNCGW 2 cut(s) 298, 474
PctI GAATGC 1 cut(s) 891
PdmI GAANNNNTTC 1 cut(s) 1088
PfeI GAWTC 3 cut(s) 168, 333, 454
PkrI GCNGC 4 cut(s) 69, 669, 697, 973
PluTI GGCGCC 1 cut(s) 419
PscI ACATGT 1 cut(s) 1071
Psp124BI GAGCTC 2 cut(s) 501, 1027
Psp6I CCWGG 1 cut(s) 975
PspGI CCWGG 1 cut(s) 975
PspN4I GGNNCC 2 cut(s) 417, 1019
PspPI GGNCC 1 cut(s) 720
PsuI RGATCY 1 cut(s) 794
RsaI GTAC 4 cut(s) 750, 768, 1103, 1122
RsaNI GTAC 4 cut(s) 749, 767, 1102, 1121
RseI CAYNNNNRTG 1 cut(s) 440
SacI GAGCTC 2 cut(s) 501, 1027
SapI GCTCTTC 1 cut(s) 1094
SaqAI TTAA 4 cut(s) 486, 591, 783, 956
SatI GCNGC 4 cut(s) 68, 668, 696, 972
Sau3AI GATC 7 cut(s) 124, 132, 247, 423, 537, 794, 1028
Sau96I GGNCC 1 cut(s) 720
ScaI AGTACT 1 cut(s) 1103
ScrFI CCNGG 1 cut(s) 977
SduI GDGCHC 3 cut(s) 501, 616, 1027
SfaNI GCATC 3 cut(s) 271, 714, 834
SfoI GGCGCC 1 cut(s) 417
SmiMI CAYNNNNRTG 1 cut(s) 440
Sse9I AATT 9 cut(s) 176, 315, 458, 518, 543, 592, 711, 761, 957
SsiI CCGC 3 cut(s) 68, 670, 809
SspDI GGCGCC 1 cut(s) 415
SspI AATATT 1 cut(s) 74
SspMI CTAG 3 cut(s) 98, 159, 986
SstI GAGCTC 2 cut(s) 501, 1027
StyD4I CCNGG 1 cut(s) 975
StyI CCWWGG 3 cut(s) 576, 798, 913
TaaI ACNGT 5 cut(s) 139, 313, 325, 556, 603
TaiI ACGT 2 cut(s) 48, 471
TaqI TCGA 4 cut(s) 422, 471, 477, 1027
TaqII GACCGA 1 cut(s) 331
TasI AATT 9 cut(s) 176, 315, 458, 518, 543, 592, 711, 761, 957
TatI WGTACW 3 cut(s) 748, 766, 1101
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 3 cut(s) 168, 333, 454
Tru1I TTAA 4 cut(s) 486, 591, 783, 956
Tru9I TTAA 4 cut(s) 486, 591, 783, 956
TscAI CASTG 6 cut(s) 27, 144, 316, 328, 910, 1000
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 3 cut(s) 667, 695, 971
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 6 cut(s) 210, 278, 382, 446, 808, 1066
TspRI CASTG 6 cut(s) 27, 144, 316, 328, 910, 1000
XapI RAATTY 3 cut(s) 176, 518, 761
XceI RCATGY 2 cut(s) 686, 1075
XmiI GTMKAC 1 cut(s) 775
XmnI GAANNNNTTC 1 cut(s) 1088
XspI CTAG 3 cut(s) 98, 159, 986
ZraI GACGTC 1 cut(s) 469
ZrmI AGTACT 1 cut(s) 1103
Zsp2I ATGCAT 2 cut(s) 286, 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.