Rh6AG403400

homogentisate phytyltransferase 1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017256
Physical Location & Seq
Forward (+)
60047344 .. 60054622
7279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG403400.1

Sequence Viewer

Length: 834 bp
ATGCCCCTCCTTCAAGTAGTAGCGCCGGCGCCAGTGAAGCTAAGACAGTGCAACTTATTAATCAAGAACAAAAGCAACAAGCCATTGCCCTTCCCTTCCCTGCAGCCACAGTATCGTTATTATTATTCATCATCTTTAGGCGGAAGCATTTTTACTGCCAATGCAAATCCAAATCTAAATATTCCAAACTGTGATGATCGGCAAATCACAGTAACCAAAAGAAGAGGAGACCATGGTCGTAAAAAACATAACGGGGCACCATTGTCCTATGCCTCACAATCACGATCAGAGAAGATCGATGTTAATATTGATGGACAACCCATGGATAGATTTCAGATTGGCGGCGGCTTTTCTAAACAATGGGACGCTTTTCATCGCTTTTGTCGTCCTCATACTGTAATCGGCACTCATCCTCTGCTCAGGTGGAAGAGACATGCAATTCTTGCTGCTGCTTGCATCCTAATTGTGAGAGCTGTCGTGGTCCAGCTTGCCTTCTTTGTACACATCCAGAAGTATGTGCTTGGTAGAGAAATTTCAATTACAAGACCATTGGTATTTGCAGTGGTTTTCATGTGCATCTTCTCCTCTGTTATTGCGTTGTTCAAGGATATACCTGATGTGGATGGTGATAGAGATTTTGGTATCCAATCTTTCAGTGTCAACCTTGGGCAAGAAAAGGTGCTCTATTTCACTTTCATTAAGGCACCACATTGTACAATGCTAAGCGCAGGCACTGGCGCCGCACCAAGCTCGGGTTCTGAGGTTCTTCGCCCCAATTCTCAATGGCATCTTTCAATTTTGATAGGGGTTTTAGATTTGATGTTTATTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 ko01100 ko01110 map00130 map01100 map01110
Pfam Domains
Protein Families
UbiA

Protein Analysis

277

Amino Acids

30.89

Weight (kDa)

9.77

Isoelectric Point (pI)

56.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 140 - 245 3.9e-12 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017256)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40790
malus_domestica MD08G1060100.v1.1
prunus_persica Prupe.1G390700_v2.0.a1
pyrus_communis pycom08g05010
rosa_chinensis RchiOBHm_Chr6g0299791
rosa_laevigata RLG00000011387
rosa_roxburghii Rroxscaffold_7G00168360
rosa_rugosa Rorug06G0292300
rosa_samantha Rh6AG403400 Rh6BG411800 Rh6CG417900 Rh6DG404700
rosa_wichuraiana Rw6G035300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 28, 256, 703, 737
AciI CCGC 4 cut(s) 141, 342, 345, 741
AcsI RAATTY 1 cut(s) 531
AcyI GRCGYC 2 cut(s) 29, 738
AfaI GTAC 2 cut(s) 501, 715
AfiI CCNNNNNNNGG 1 cut(s) 752
AgsI TTSAA 4 cut(s) 14, 537, 604, 795
AjuI GAANNNNNNNTTGG 2 cut(s) 739, 771
AluBI AGCT 4 cut(s) 40, 473, 487, 750
AluI AGCT 4 cut(s) 40, 473, 487, 750
Alw21I GWGCWC 1 cut(s) 684
Alw26I GTCTC 2 cut(s) 222, 424
AlwNI CAGNNNCTG 1 cut(s) 734
Ama87I CYCGRG 1 cut(s) 751
ApeKI GCWGC 3 cut(s) 103, 446, 449
ApoI RAATTY 1 cut(s) 531
AseI ATTAAT 1 cut(s) 59
AspLEI GCGC 4 cut(s) 25, 31, 728, 740
AspS9I GGNCC 1 cut(s) 481
AsuHPI GGTGA 1 cut(s) 638
AvaI CYCGRG 1 cut(s) 751
AvaII GGWCC 1 cut(s) 481
BaeGI GKGCMC 1 cut(s) 259
BanI GGYRCC 4 cut(s) 28, 256, 703, 737
BarI GAAGNNNNNNTAC 2 cut(s) 136, 168
Bbv12I GWGCWC 1 cut(s) 684
BbvI GCAGC 3 cut(s) 115, 433, 436
BccI CCATC 2 cut(s) 305, 617
BcgI CGANNNNNNTGC 2 cut(s) 732, 766
BciVI GTATCC 1 cut(s) 653
BcoDI GTCTC 2 cut(s) 222, 424
BfmI CTRYAG 1 cut(s) 101
BfoI RGCGCY 3 cut(s) 26, 32, 741
BfuI GTATCC 1 cut(s) 653
BisI GCNGC 6 cut(s) 104, 343, 346, 447, 450, 741
BlpI GCTNAGC 1 cut(s) 722
BlsI GCNGC 6 cut(s) 105, 344, 347, 448, 451, 742
Bme18I GGWCC 1 cut(s) 481
BmeT110I CYCGRG 1 cut(s) 751
BmgT120I GGNCC 1 cut(s) 481
BmiI GGNNCC 4 cut(s) 30, 258, 705, 739
BmsI GCATC 3 cut(s) 465, 585, 796
BoxI GACNNNNGTC 1 cut(s) 234
Bpu10I CCTNAGC 1 cut(s) 419
Bpu1102I GCTNAGC 1 cut(s) 722
Bsa29I ATCGAT 1 cut(s) 297
BsaHI GRCGYC 2 cut(s) 29, 738
BsaI GGTCTC 1 cut(s) 222
BsaJI CCNNGG 3 cut(s) 232, 321, 664
Bsc4I CCNNNNNNNGG 1 cut(s) 752
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 2 cut(s) 32, 739
Bse3DI GCAATG 1 cut(s) 83
BseCI ATCGAT 1 cut(s) 297
BseDI CCNNGG 3 cut(s) 232, 321, 664
BseGI GGATG 4 cut(s) 409, 456, 504, 628
BseLI CCNNNNNNNGG 1 cut(s) 752
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 2 cut(s) 433, 750
BseNI ACTGG 2 cut(s) 32, 739
BseRI GAGGAG 2 cut(s) 240, 574
BseSI GKGCMC 1 cut(s) 259
BseXI GCAGC 3 cut(s) 115, 433, 436
BshNI GGYRCC 4 cut(s) 28, 256, 703, 737
BshVI ATCGAT 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 684
BsiHKCI CYCGRG 1 cut(s) 751
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 1 cut(s) 752
BsmAI GTCTC 2 cut(s) 222, 424
BsmFI GGGAC 1 cut(s) 377
Bso31I GGTCTC 1 cut(s) 222
BsoBI CYCGRG 1 cut(s) 751
Bsp1286I GDGCHC 2 cut(s) 259, 684
Bsp1407I TGTACA 2 cut(s) 499, 713
Bsp143I GATC 3 cut(s) 196, 284, 294
Bsp1720I GCTNAGC 1 cut(s) 722
Bsp19I CCATGG 2 cut(s) 232, 321
BspACI CCGC 4 cut(s) 141, 342, 345, 741
BspCNI CTCAG 2 cut(s) 432, 751
BspDI ATCGAT 1 cut(s) 297
BspLI GGNNCC 4 cut(s) 30, 258, 705, 739
BspMAI CTGCAG 1 cut(s) 105
BspT107I GGYRCC 4 cut(s) 28, 256, 703, 737
BspTNI GGTCTC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 25
BsrGI TGTACA 2 cut(s) 499, 713
BsrI ACTGG 2 cut(s) 32, 739
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 3 cut(s) 232, 321, 664
BssMI GATC 3 cut(s) 196, 284, 294
BssNI GRCGYC 2 cut(s) 29, 738
BssT1I CCWWGG 3 cut(s) 232, 321, 664
Bst4CI ACNGT 5 cut(s) 48, 111, 191, 211, 397
Bst6I CTCTTC 2 cut(s) 217, 422
BstACI GRCGYC 2 cut(s) 29, 738
BstAPI GCANNNNNTGC 1 cut(s) 443
BstAUI TGTACA 2 cut(s) 499, 713
BstC8I GCNNGC 4 cut(s) 27, 454, 489, 730
BstDEI CTNAG 5 cut(s) 41, 419, 722, 759, 831
BstDSI CCRYGG 2 cut(s) 232, 321
BstF5I GGATG 4 cut(s) 409, 456, 504, 628
BstH2I RGCGCY 3 cut(s) 26, 32, 741
BstHHI GCGC 4 cut(s) 25, 31, 728, 740
BstKTI GATC 3 cut(s) 199, 287, 297
BstMAI GTCTC 2 cut(s) 222, 424
BstMBI GATC 3 cut(s) 196, 284, 294
BstMWI GCNNNNNNNGC 2 cut(s) 37, 443
BstNSI RCATGY 1 cut(s) 437
BstPAI GACNNNNGTC 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 101
BstSLI GKGCMC 1 cut(s) 259
BstV1I GCAGC 3 cut(s) 115, 433, 436
Bsu15I ATCGAT 1 cut(s) 297
BsuI GTATCC 1 cut(s) 653
BsuTUI ATCGAT 1 cut(s) 297
BtgI CCRYGG 2 cut(s) 232, 321
BtgZI GCGATG 1 cut(s) 359
BtsCI GGATG 4 cut(s) 409, 456, 504, 628
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 5 cut(s) 39, 53, 567, 661, 732
Cac8I GCNNGC 4 cut(s) 27, 454, 489, 730
CaiI CAGNNNCTG 1 cut(s) 734
CfoI GCGC 4 cut(s) 25, 31, 728, 740
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 481
ClaI ATCGAT 1 cut(s) 297
CseI GACGC 1 cut(s) 374
Csp6I GTAC 2 cut(s) 500, 714
CviAII CATG 4 cut(s) 233, 322, 434, 571
CviJI RGCY 7 cut(s) 40, 82, 106, 348, 473, 487, 750
CviKI_1 RGCY 7 cut(s) 40, 82, 106, 348, 473, 487, 750
CviQI GTAC 2 cut(s) 500, 714
DdeI CTNAG 5 cut(s) 41, 419, 722, 759, 831
DinI GGCGCC 2 cut(s) 30, 739
DpnI GATC 3 cut(s) 198, 286, 296
DpnII GATC 3 cut(s) 196, 284, 294
Eam1104I CTCTTC 2 cut(s) 217, 422
EarI CTCTTC 2 cut(s) 217, 422
EciI GGCGGA 1 cut(s) 156
Eco130I CCWWGG 3 cut(s) 232, 321, 664
Eco31I GGTCTC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 481
Eco88I CYCGRG 1 cut(s) 751
EcoT14I CCWWGG 3 cut(s) 232, 321, 664
EgeI GGCGCC 2 cut(s) 30, 739
EheI GGCGCC 2 cut(s) 30, 739
ErhI CCWWGG 3 cut(s) 232, 321, 664
FaeI CATG 4 cut(s) 236, 325, 437, 574
FaiI YATR 9 cut(s) 234, 249, 270, 323, 393, 435, 516, 572, 611
FaqI GGGAC 1 cut(s) 377
FatI CATG 4 cut(s) 232, 321, 433, 570
Fnu4HI GCNGC 6 cut(s) 104, 343, 346, 447, 450, 741
FokI GGATG 4 cut(s) 396, 443, 491, 635
Fsp4HI GCNGC 6 cut(s) 104, 343, 346, 447, 450, 741
GlaI GCGC 4 cut(s) 24, 30, 727, 739
GluI GCNGC 6 cut(s) 104, 343, 346, 447, 450, 741
HaeII RGCGCY 3 cut(s) 26, 32, 741
HapII CCGG 1 cut(s) 26
HgaI GACGC 1 cut(s) 374
HhaI GCGC 4 cut(s) 25, 31, 728, 740
Hin1I GRCGYC 2 cut(s) 29, 738
Hin1II CATG 4 cut(s) 236, 325, 437, 574
Hin6I GCGC 4 cut(s) 23, 29, 726, 738
HinP1I GCGC 4 cut(s) 23, 29, 726, 738
HincII GTYRAC 1 cut(s) 661
HindII GTYRAC 1 cut(s) 661
HpaII CCGG 1 cut(s) 26
HphI GGTGA 1 cut(s) 638
Hpy166II GTNNAC 2 cut(s) 502, 661
Hpy188I TCNGA 3 cut(s) 289, 336, 760
Hpy188III TCNNGA 3 cut(s) 64, 282, 508
Hpy8I GTNNAC 2 cut(s) 502, 661
HpyAV CCTTC 4 cut(s) 20, 100, 105, 502
HpyCH4III ACNGT 5 cut(s) 48, 111, 191, 211, 397
HpyCH4V TGCA 7 cut(s) 51, 103, 164, 437, 456, 560, 576
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 443
HpyF3I CTNAG 5 cut(s) 41, 419, 722, 759, 831
Hsp92I GRCGYC 2 cut(s) 29, 738
Hsp92II CATG 4 cut(s) 236, 325, 437, 574
HspAI GCGC 4 cut(s) 23, 29, 726, 738
KasI GGCGCC 2 cut(s) 28, 737
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
Kzo9I GATC 3 cut(s) 196, 284, 294
LpnPI CCDG 9 cut(s) 39, 45, 113, 406, 497, 521, 627, 714, 720
Lsp1109I GCAGC 3 cut(s) 115, 433, 436
LweI GCATC 3 cut(s) 465, 585, 796
MaeIII GTNAC 1 cut(s) 211
MalI GATC 3 cut(s) 198, 286, 296
MboI GATC 3 cut(s) 196, 284, 294
MboII GAAGA 5 cut(s) 234, 304, 439, 571, 758
MhlI GDGCHC 2 cut(s) 259, 684
MluCI AATT 6 cut(s) 438, 462, 531, 537, 775, 795
Mly113I GGCGCC 2 cut(s) 29, 738
MnlI CCTC 7 cut(s) 17, 218, 283, 399, 423, 595, 754
MreI CGCCGGCG 1 cut(s) 25
MroNI GCCGGC 1 cut(s) 25
MseI TTAA 3 cut(s) 59, 303, 699
MspI CCGG 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 37, 443
NaeI GCCGGC 1 cut(s) 27
NarI GGCGCC 2 cut(s) 29, 738
NcoI CCATGG 2 cut(s) 232, 321
NdeII GATC 3 cut(s) 196, 284, 294
NgoMIV GCCGGC 1 cut(s) 25
NlaIII CATG 4 cut(s) 236, 325, 437, 574
NlaIV GGNNCC 4 cut(s) 30, 258, 705, 739
NspI RCATGY 1 cut(s) 437
PcsI WCGNNNNNNNCGW 1 cut(s) 382
PdiI GCCGGC 1 cut(s) 27
PkrI GCNGC 6 cut(s) 105, 344, 347, 448, 451, 742
PluTI GGCGCC 2 cut(s) 32, 741
PshAI GACNNNNGTC 1 cut(s) 234
PshBI ATTAAT 1 cut(s) 59
PspN4I GGNNCC 4 cut(s) 30, 258, 705, 739
PspPI GGNCC 1 cut(s) 481
PstI CTGCAG 1 cut(s) 105
PstNI CAGNNNCTG 1 cut(s) 734
RsaI GTAC 2 cut(s) 501, 715
RsaNI GTAC 2 cut(s) 500, 714
SaqAI TTAA 3 cut(s) 59, 303, 699
SatI GCNGC 6 cut(s) 104, 343, 346, 447, 450, 741
Sau3AI GATC 3 cut(s) 196, 284, 294
Sau96I GGNCC 1 cut(s) 481
SduI GDGCHC 2 cut(s) 259, 684
SetI ASST 9 cut(s) 42, 425, 475, 489, 616, 666, 681, 752, 765
SfaNI GCATC 3 cut(s) 465, 585, 796
SfcI CTRYAG 1 cut(s) 101
SfoI GGCGCC 2 cut(s) 30, 739
SgrAI CRCCGGYG 1 cut(s) 25
SinI GGWCC 1 cut(s) 481
Sse9I AATT 6 cut(s) 438, 462, 531, 537, 775, 795
SsiI CCGC 4 cut(s) 141, 342, 345, 741
SspDI GGCGCC 2 cut(s) 28, 737
SspI AATATT 2 cut(s) 181, 307
StyI CCWWGG 3 cut(s) 232, 321, 664
TaaI ACNGT 5 cut(s) 48, 111, 191, 211, 397
TaqI TCGA 1 cut(s) 297
TasI AATT 6 cut(s) 438, 462, 531, 537, 775, 795
TatI WGTACW 2 cut(s) 499, 713
TauI GCSGC 3 cut(s) 345, 348, 743
Tru1I TTAA 3 cut(s) 59, 303, 699
Tru9I TTAA 3 cut(s) 59, 303, 699
TscAI CASTG 5 cut(s) 39, 53, 567, 661, 739
TseI GCWGC 3 cut(s) 103, 446, 449
TspDTI ATGAA 4 cut(s) 117, 362, 559, 685
TspRI CASTG 5 cut(s) 39, 53, 567, 661, 739
VpaK11BI GGWCC 1 cut(s) 481
VspI ATTAAT 1 cut(s) 59
XapI RAATTY 1 cut(s) 531
XceI RCATGY 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.