Rw6G035300

homogentisate phytyltransferase 1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0017256
Physical Location & Seq
Forward (+)
59860410 .. 59864426
4017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G035300.1

Sequence Viewer

Length: 1209 bp
ATGTCAGATTTGCCTGGCGTGTTGGGCTATGATACTACTTGCTGGGAGAAGAATCCACATTATCGTTATTATTATTCATCATCTTTAGGCGGAAGCATTTTTACTGCCAATGCAAATCCAAATCTAAATATTCCAAACAGTGATGATCGGCAAATCACAGTAACCAAAAGAAGAGGAGACCATGGTCGTAAAAAACATAACGGGGCACCATTGTCCTATGCCTCACAATCACGATCAGAGAAGATCGATGTTAATATTGATGGACAACCCATGGATAGATTTCAGATTGGCGGCGGCTTTTCTAAACAATGGGACGCTTTTCATCGCTTTTGTCGTCCTCATACTGTAATCGGCACTGTTATAGGTATATTATCGGTCTCTCTTCTTCCATTGGAACAAATTGGGGACTTGTCTCCTGCATTTTTTATAGGAATACTGAAGGCATTGGTTCCCTCGGTGTTAATGAACATCTATGTGGTGGGATTGAATCAAGTGTTTGATGTCGAAATAGACAAGGTTAACAAACCTGATCTCCCACTAGCTTCTGGTGAATTCTCTATGGGAACTGGGATCACAATCGTTTCCACAGTTTTACTGATGAGTTTTGCTATGGGAGTTATGTTCAAGTCTCCACCTCTTTTCTCTGCCCTTGCCATTAGCTTTTTTCTTGGAAGTGCTTATTCCATTGAGGTTATAGCATCGCTGCTCAGGTGGAAGAGACATGCAATTCTTGCTGCTGCTTGCATCCTAATTGTGAGAGCTGTCGTGGTCCAGCTTGCCTTCTTTGTACACATCCAGAAGTATGTGCTTGGTAGAGAAATTTCAATTACAAGACCATTGGTATTTGCAGTGGTTTTCATGTGCATCTTCTCCTCTGTTATTGCGTTGTTCAAGGATATACCTGATGTGGATGGTGATAGAGATTTTGGTATCCAATCTTTCAGTGTCAACCTTGGGCAAGAAAAGGTGTATTGGGTTTGTGTAAATATGTTGTTACTGGCATATGGGGCAGCAGTGGTGATTGGAGCCTCTTCTTCCTTCCTACCAAGCAAGGTTTTCACCATAATAGGTCATGGTGCACTGGCTTCCCTTCTGTGGCTTCGAGCTCAATCAACAGATATAGCCAATAAAGCCTCCCTAACTTCTTTTTACATGTTCATTTGGAAGCTGTTTTACGCCGAGTATCTGCTTATTCCTTTTGTACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 ko01100 ko01110 map00130 map01100 map01110
Pfam Domains
Protein Families
UbiA

Protein Analysis

402

Amino Acids

44.4

Weight (kDa)

8.96

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 134 - 390 6e-37 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017256)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40790
malus_domestica MD08G1060100.v1.1
prunus_persica Prupe.1G390700_v2.0.a1
pyrus_communis pycom08g05010
rosa_chinensis RchiOBHm_Chr6g0299791
rosa_laevigata RLG00000011387
rosa_roxburghii Rroxscaffold_7G00168360
rosa_rugosa Rorug06G0292300
rosa_samantha Rh6AG403400 Rh6BG411800 Rh6CG417900 Rh6DG404700
rosa_wichuraiana Rw6G035300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 205
AciI CCGC 3 cut(s) 90, 291, 294
AclWI GGATC 1 cut(s) 578
AcsI RAATTY 2 cut(s) 551, 819
AcuI CTGAAG 1 cut(s) 458
AfaI GTAC 2 cut(s) 789, 1203
AfiI CCNNNNNNNGG 1 cut(s) 1095
AflIII ACRYGT 1 cut(s) 1152
AgsI TTSAA 4 cut(s) 487, 625, 825, 892
AjnI CCWGG 1 cut(s) 13
AluBI AGCT 6 cut(s) 542, 660, 761, 775, 1106, 1168
AluI AGCT 6 cut(s) 542, 660, 761, 775, 1106, 1168
Alw21I GWGCWC 2 cut(s) 1081, 1108
Alw26I GTCTC 5 cut(s) 171, 382, 417, 633, 712
Alw44I GTGCAC 1 cut(s) 1077
AlwI GGATC 1 cut(s) 578
ApaLI GTGCAC 1 cut(s) 1077
ApeKI GCWGC 4 cut(s) 703, 734, 737, 1010
ApoI RAATTY 2 cut(s) 551, 819
AspS9I GGNCC 1 cut(s) 769
AsuHPI GGTGA 4 cut(s) 560, 926, 1030, 1051
AvaII GGWCC 1 cut(s) 769
BaeGI GKGCMC 2 cut(s) 208, 1081
BanI GGYRCC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 1108
BarI GAAGNNNNNNTAC 4 cut(s) 85, 117, 1157, 1189
Bbv12I GWGCWC 2 cut(s) 1081, 1108
BbvI GCAGC 4 cut(s) 690, 721, 724, 1022
BccI CCATC 2 cut(s) 254, 905
BciT130I CCWGG 1 cut(s) 15
BciVI GTATCC 1 cut(s) 941
BcoDI GTCTC 5 cut(s) 171, 382, 417, 633, 712
BfaI CTAG 1 cut(s) 539
BfuI GTATCC 1 cut(s) 941
BisI GCNGC 6 cut(s) 292, 295, 704, 735, 738, 1011
BlsI GCNGC 6 cut(s) 293, 296, 705, 736, 739, 1012
Bme1390I CCNGG 1 cut(s) 15
Bme18I GGWCC 1 cut(s) 769
BmgT120I GGNCC 1 cut(s) 769
BmiI GGNNCC 3 cut(s) 207, 450, 1027
BmrFI CCNGG 1 cut(s) 15
BmrI ACTGGG 1 cut(s) 576
BmsI GCATC 3 cut(s) 707, 753, 873
BmuI ACTGGG 1 cut(s) 576
BoxI GACNNNNGTC 1 cut(s) 183
Bpu10I CCTNAGC 1 cut(s) 707
Bsa29I ATCGAT 1 cut(s) 246
BsaBI GATNNNNATC 1 cut(s) 575
BsaI GGTCTC 2 cut(s) 171, 382
BsaJI CCNNGG 4 cut(s) 181, 270, 453, 952
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bsc4I CCNNNNNNNGG 1 cut(s) 1095
Bse1I ACTGG 3 cut(s) 571, 1002, 1086
Bse8I GATNNNNATC 1 cut(s) 575
BseBI CCWGG 1 cut(s) 15
BseCI ATCGAT 1 cut(s) 246
BseDI CCNNGG 4 cut(s) 181, 270, 453, 952
BseGI GGATG 3 cut(s) 744, 792, 916
BseJI GATNNNNATC 1 cut(s) 575
BseLI CCNNNNNNNGG 1 cut(s) 1095
BseMII CTCAG 1 cut(s) 721
BseNI ACTGG 3 cut(s) 571, 1002, 1086
BseRI GAGGAG 2 cut(s) 189, 862
BseSI GKGCMC 2 cut(s) 208, 1081
BseXI GCAGC 4 cut(s) 690, 721, 724, 1022
BseYI CCCAGC 1 cut(s) 42
BshNI GGYRCC 1 cut(s) 205
BshVI ATCGAT 1 cut(s) 246
BsiHKAI GWGCWC 2 cut(s) 1081, 1108
BslFI GGGAC 2 cut(s) 326, 419
BslI CCNNNNNNNGG 1 cut(s) 1095
BsmAI GTCTC 5 cut(s) 171, 382, 417, 633, 712
BsmFI GGGAC 2 cut(s) 326, 419
Bso31I GGTCTC 2 cut(s) 171, 382
Bsp1286I GDGCHC 3 cut(s) 208, 1081, 1108
Bsp1407I TGTACA 1 cut(s) 787
Bsp143I GATC 5 cut(s) 145, 233, 243, 529, 570
Bsp19I CCATGG 2 cut(s) 181, 270
BspACI CCGC 3 cut(s) 90, 291, 294
BspCNI CTCAG 1 cut(s) 720
BspDI ATCGAT 1 cut(s) 246
BspLI GGNNCC 3 cut(s) 207, 450, 1027
BspPI GGATC 1 cut(s) 578
BspT107I GGYRCC 1 cut(s) 205
BspTNI GGTCTC 2 cut(s) 171, 382
BsrGI TGTACA 1 cut(s) 787
BsrI ACTGG 3 cut(s) 571, 1002, 1086
BssECI CCNNGG 4 cut(s) 181, 270, 453, 952
BssMI GATC 5 cut(s) 145, 233, 243, 529, 570
BssT1I CCWWGG 3 cut(s) 181, 270, 952
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 5 cut(s) 140, 160, 346, 358, 589
Bst6I CTCTTC 4 cut(s) 166, 387, 710, 1036
BstAPI GCANNNNNTGC 1 cut(s) 731
BstAUI TGTACA 1 cut(s) 787
BstC8I GCNNGC 2 cut(s) 742, 777
BstDEI CTNAG 1 cut(s) 707
BstDSI CCRYGG 2 cut(s) 181, 270
BstF5I GGATG 3 cut(s) 744, 792, 916
BstKTI GATC 5 cut(s) 148, 236, 246, 532, 573
BstMAI GTCTC 5 cut(s) 171, 382, 417, 633, 712
BstMBI GATC 5 cut(s) 145, 233, 243, 529, 570
BstMWI GCNNNNNNNGC 4 cut(s) 24, 731, 1007, 1130
BstNI CCWGG 1 cut(s) 15
BstNSI RCATGY 2 cut(s) 725, 1156
BstPAI GACNNNNGTC 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 13
BstSLI GKGCMC 2 cut(s) 208, 1081
BstV1I GCAGC 4 cut(s) 690, 721, 724, 1022
Bsu15I ATCGAT 1 cut(s) 246
BsuI GTATCC 1 cut(s) 941
BsuTUI ATCGAT 1 cut(s) 246
BtgI CCRYGG 2 cut(s) 181, 270
BtgZI GCGATG 2 cut(s) 308, 684
BtsCI GGATG 3 cut(s) 744, 792, 916
BtsI GCAGTG 2 cut(s) 855, 1020
BtsIMutI CAGTG 6 cut(s) 145, 354, 855, 949, 1020, 1079
Cac8I GCNNGC 2 cut(s) 742, 777
Cfr13I GGNCC 1 cut(s) 769
ClaI ATCGAT 1 cut(s) 246
CseI GACGC 1 cut(s) 323
Csp6I GTAC 2 cut(s) 788, 1202
CviAII CATG 6 cut(s) 182, 271, 722, 859, 1073, 1153
CviQI GTAC 2 cut(s) 788, 1202
DdeI CTNAG 1 cut(s) 707
DpnI GATC 5 cut(s) 147, 235, 245, 531, 572
DpnII GATC 5 cut(s) 145, 233, 243, 529, 570
Eam1104I CTCTTC 4 cut(s) 166, 387, 710, 1036
EarI CTCTTC 4 cut(s) 166, 387, 710, 1036
EciI GGCGGA 1 cut(s) 105
Ecl136II GAGCTC 1 cut(s) 1106
Eco130I CCWWGG 3 cut(s) 181, 270, 952
Eco24I GRGCYC 1 cut(s) 1108
Eco31I GGTCTC 2 cut(s) 171, 382
Eco47I GGWCC 1 cut(s) 769
Eco53kI GAGCTC 1 cut(s) 1106
Eco57I CTGAAG 1 cut(s) 458
EcoICRI GAGCTC 1 cut(s) 1106
EcoRI GAATTC 1 cut(s) 551
EcoRII CCWGG 1 cut(s) 13
EcoT14I CCWWGG 3 cut(s) 181, 270, 952
EcoT38I GRGCYC 1 cut(s) 1108
ErhI CCWWGG 3 cut(s) 181, 270, 952
FaeI CATG 6 cut(s) 185, 274, 725, 862, 1076, 1156
FaqI GGGAC 2 cut(s) 326, 419
FatI CATG 6 cut(s) 181, 270, 721, 858, 1072, 1152
FauNDI CATATG 1 cut(s) 1003
Fnu4HI GCNGC 6 cut(s) 292, 295, 704, 735, 738, 1011
FokI GGATG 3 cut(s) 731, 779, 923
FriOI GRGCYC 1 cut(s) 1108
Fsp4HI GCNGC 6 cut(s) 292, 295, 704, 735, 738, 1011
FspBI CTAG 1 cut(s) 539
GluI GCNGC 6 cut(s) 292, 295, 704, 735, 738, 1011
GsaI CCCAGC 1 cut(s) 46
HgaI GACGC 1 cut(s) 323
Hin1II CATG 6 cut(s) 185, 274, 725, 862, 1076, 1156
HincII GTYRAC 2 cut(s) 520, 949
HindII GTYRAC 2 cut(s) 520, 949
HinfI GANTC 2 cut(s) 52, 487
HpaI GTTAAC 1 cut(s) 520
HphI GGTGA 4 cut(s) 560, 926, 1030, 1051
Hpy166II GTNNAC 4 cut(s) 520, 790, 949, 1079
Hpy188I TCNGA 3 cut(s) 7, 238, 285
Hpy188III TCNNGA 2 cut(s) 231, 796
Hpy8I GTNNAC 4 cut(s) 520, 790, 949, 1079
HpyAV CCTTC 4 cut(s) 433, 790, 1048, 1100
HpyCH4III ACNGT 5 cut(s) 140, 160, 346, 358, 589
HpyCH4IV ACGT 1 cut(s) 1204
HpyCH4V TGCA 7 cut(s) 113, 419, 725, 744, 848, 864, 1079
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 731, 1007, 1130
HpyF3I CTNAG 1 cut(s) 707
HpySE526I ACGT 1 cut(s) 1204
Hsp92II CATG 6 cut(s) 185, 274, 725, 862, 1076, 1156
KspAI GTTAAC 1 cut(s) 520
Kzo9I GATC 5 cut(s) 145, 233, 243, 529, 570
LmnI GCTCC 1 cut(s) 1025
Lsp1109I GCAGC 4 cut(s) 690, 721, 724, 1022
LweI GCATC 3 cut(s) 707, 753, 873
MaeI CTAG 1 cut(s) 539
MaeII ACGT 1 cut(s) 1204
MaeIII GTNAC 2 cut(s) 160, 993
MalI GATC 5 cut(s) 147, 235, 245, 531, 572
MboI GATC 5 cut(s) 145, 233, 243, 529, 570
MboII GAAGA 9 cut(s) 61, 183, 253, 374, 377, 727, 859, 1023, 1026
MhlI GDGCHC 3 cut(s) 208, 1081, 1108
MluCI AATT 6 cut(s) 399, 551, 726, 750, 819, 825
MnlI CCTC 9 cut(s) 167, 232, 348, 463, 645, 682, 883, 1039, 1144
MseI TTAA 3 cut(s) 252, 461, 519
MslI CAYNNNNRTG 1 cut(s) 473
MspR9I CCNGG 1 cut(s) 15
MvaI CCWGG 1 cut(s) 15
MwoI GCNNNNNNNGC 4 cut(s) 24, 731, 1007, 1130
NcoI CCATGG 2 cut(s) 181, 270
NdeI CATATG 1 cut(s) 1003
NdeII GATC 5 cut(s) 145, 233, 243, 529, 570
NlaIII CATG 6 cut(s) 185, 274, 725, 862, 1076, 1156
NlaIV GGNNCC 3 cut(s) 207, 450, 1027
NmeAIII GCCGAG 1 cut(s) 1204
NspI RCATGY 2 cut(s) 725, 1156
PciI ACATGT 1 cut(s) 1152
PcsI WCGNNNNNNNCGW 1 cut(s) 331
PfeI GAWTC 2 cut(s) 52, 487
PkrI GCNGC 6 cut(s) 293, 296, 705, 736, 739, 1012
PscI ACATGT 1 cut(s) 1152
PshAI GACNNNNGTC 1 cut(s) 183
Psp124BI GAGCTC 1 cut(s) 1108
Psp6I CCWGG 1 cut(s) 13
PspFI CCCAGC 1 cut(s) 42
PspGI CCWGG 1 cut(s) 13
PspN4I GGNNCC 3 cut(s) 207, 450, 1027
PspPI GGNCC 1 cut(s) 769
RsaI GTAC 2 cut(s) 789, 1203
RsaNI GTAC 2 cut(s) 788, 1202
RseI CAYNNNNRTG 1 cut(s) 473
SacI GAGCTC 1 cut(s) 1108
SaqAI TTAA 3 cut(s) 252, 461, 519
SatI GCNGC 6 cut(s) 292, 295, 704, 735, 738, 1011
Sau3AI GATC 5 cut(s) 145, 233, 243, 529, 570
Sau96I GGNCC 1 cut(s) 769
ScrFI CCNGG 1 cut(s) 15
SduI GDGCHC 3 cut(s) 208, 1081, 1108
SfaNI GCATC 3 cut(s) 707, 753, 873
SinI GGWCC 1 cut(s) 769
SmiMI CAYNNNNRTG 1 cut(s) 473
Sse9I AATT 6 cut(s) 399, 551, 726, 750, 819, 825
SsiI CCGC 3 cut(s) 90, 291, 294
SspI AATATT 2 cut(s) 130, 256
SspMI CTAG 1 cut(s) 539
SstI GAGCTC 1 cut(s) 1108
StyD4I CCNGG 1 cut(s) 13
StyI CCWWGG 3 cut(s) 181, 270, 952
TaaI ACNGT 5 cut(s) 140, 160, 346, 358, 589
TaiI ACGT 1 cut(s) 1207
TaqI TCGA 3 cut(s) 246, 504, 1102
TaqII GACCGA 1 cut(s) 364
TasI AATT 6 cut(s) 399, 551, 726, 750, 819, 825
TatI WGTACW 1 cut(s) 787
TauI GCSGC 2 cut(s) 294, 297
TfiI GAWTC 2 cut(s) 52, 487
Tru1I TTAA 3 cut(s) 252, 461, 519
Tru9I TTAA 3 cut(s) 252, 461, 519
TscAI CASTG 6 cut(s) 145, 361, 855, 949, 1020, 1086
TseI GCWGC 4 cut(s) 703, 734, 737, 1010
TspDTI ATGAA 5 cut(s) 66, 311, 479, 847, 1147
TspRI CASTG 6 cut(s) 145, 361, 855, 949, 1020, 1086
VneI GTGCAC 1 cut(s) 1077
VpaK11BI GGWCC 1 cut(s) 769
XapI RAATTY 2 cut(s) 551, 819
XceI RCATGY 2 cut(s) 725, 1156
XspI CTAG 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.