FvH4_3g00491

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010534
Physical Location & Seq
Forward (+)
265270 .. 269455
4186 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00491.t2

Sequence Viewer

Length: 1212 bp
ATGAATTGTATGCCATCGAAAAACATATGGATTCGGAGGCAACAATGCCCATGTGGGGATTGGAAGTGTTATGTTACATATGAGGGTGACTCTGAGGAGACCTCCCTTGCTGCCCAATTGGTAAAGAATGATACTTCAACCTCAGAAGCTATGGTCTCACCCTATGTTGGAATGGTGTTCAAGAATGATGATGATGCATTTGAGTATTATGGCAATTTCGCTAGAAGAAATGGCTTCTCTGTTAGGAAAGAGAGGTCCAGGCTTAGCCCACAGTTGGGTATTTATAAGCGTGACTTTGTTTGCTATAGGTCTGGGTTTGCTCCGGCCAAGAAGAAGCTGACAGGGGACCACCATAGGGATAGGAAGTCCGTTCGGTGTGGATGTGATGCGAAAATGTATTTGTCGAAGGAGGTTGTTGATGGGGTTTCTCAATGGATTGTTGTCCAATTCAGTAATGTGCATAACCATGAGCTTTTGGAAGATGACCAAGTCCGCCTCCTTCCTGCTTATCGTAAAATTCGAGAGGCAGATCAAGAGCGGATACTGTTACTTTCTAAAGCTGGGTTCCCTATACAGCGCATTGTCAAGGTATTGGAGTTGGAGAAGGGGATTCAAGGCGGACAGTTACCCTTTTTAGAGAGGGATGTCAGAAACTTTGTCCAAAATCGTAAGAAGGTTGTTCAAGAAAATGATGCCTTGATCACTGAAAAAAGGGAAAATGATACTCTAGAACTTCTTGAGGCGTGCAAGGTGACAAAAGAGGCGGATGAAGACTTTGTTTATGATTTTACAGTCGATGAGAATGATAAGGTTGAACACATTGCATGGTCTTATGGTCATTCAGTCGAGGCATATACTATGTTTGGGGATGCAGTTTATTTTGACACTATGTATCAATCAATCACATATGGCATGCTTTTTGGAGCATGGCTTGGCATTGACAACCATGGAAGAACCGTTTTCTTTGGCTGTGTTCTACTGCAAGATGAAACTCCTCGTTCCTTCTCATGGGCTTTACAGACTTTTGTTCGTTTCATGAGAGGAAGATGGCCACAAACAATTATAACTGATCTTGATCCCGGGCTTAGAGATGCAATAACAAGCAAACTGCCTGACACTAAGCATGTCATTTCACTGTGGAATATTTTTCCAAAGATAAGCACATTGCTTTACTTCATTCATTTCGGGCATCTTGGGCTCTATGCTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

404

Amino Acids

46.64

Weight (kDa)

6.39

Isoelectric Point (pI)

37.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 68 - 159 1.6e-22 FAR1 DNA-binding domain
HTH_FAR1 PF26175 172 - 226 2.9e-25 FAR1 HTH-like domain
ZSWIM1-3_RNaseH-like PF21056 256 - 374 1.4e-08 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 292 - 383 2.4e-17 MULE transposase domain
SWIM PF04434 572 - 597 9e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 285, 1064
AccBSI CCGCTC 1 cut(s) 538
AciI CCGC 4 cut(s) 493, 538, 618, 764
AclWI GGATC 1 cut(s) 1070
AcoI YGGCCR 2 cut(s) 324, 1049
AcsI RAATTY 1 cut(s) 516
AfiI CCNNNNNNNGG 6 cut(s) 55, 167, 274, 275, 355, 1008
AgsI TTSAA 5 cut(s) 138, 181, 614, 683, 815
AjnI CCWGG 1 cut(s) 257
AluBI AGCT 4 cut(s) 149, 337, 472, 560
AluI AGCT 4 cut(s) 149, 337, 472, 560
Alw26I GTCTC 2 cut(s) 92, 160
AlwI GGATC 1 cut(s) 1070
Ama87I CYCGRG 1 cut(s) 1079
AoxI GGCC 2 cut(s) 324, 1049
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 516
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 2 cut(s) 255, 346
AsuC2I CCSGG 2 cut(s) 1080, 1081
AsuHPI GGTGA 3 cut(s) 98, 150, 763
AvaI CYCGRG 1 cut(s) 1079
AvaII GGWCC 2 cut(s) 255, 346
BalI TGGCCA 1 cut(s) 1051
BanII GRGCYC 1 cut(s) 1200
BbsI GAAGAC 1 cut(s) 777
BbvI GCAGC 1 cut(s) 97
BccI CCATC 3 cut(s) 22, 413, 1041
BciT130I CCWGG 1 cut(s) 259
BciVI GTATCC 1 cut(s) 534
BclI TGATCA 1 cut(s) 699
BcnI CCSGG 2 cut(s) 1080, 1081
BcoDI GTCTC 2 cut(s) 92, 160
BfaI CTAG 2 cut(s) 222, 728
BfmI CTRYAG 1 cut(s) 304
BfuI GTATCC 1 cut(s) 534
BisI GCNGC 1 cut(s) 111
BlpI GCTNAGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 3 cut(s) 259, 1080, 1081
Bme18I GGWCC 2 cut(s) 255, 346
BmeT110I CYCGRG 1 cut(s) 1079
BmgT120I GGNCC 2 cut(s) 255, 346
BmiI GGNNCC 2 cut(s) 347, 566
BmrFI CCNGG 3 cut(s) 259, 1080, 1081
BmsI GCATC 6 cut(s) 184, 376, 682, 859, 1081, 1198
BpiI GAAGAC 1 cut(s) 777
BplI GAGNNNNNCTC 4 cut(s) 74, 106, 86, 118
Bpu1102I GCTNAGC 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 758
BpuMI CCSGG 2 cut(s) 1080, 1081
BsaBI GATNNNNATC 1 cut(s) 1074
BsaI GGTCTC 2 cut(s) 92, 160
BsaJI CCNNGG 2 cut(s) 946, 1079
Bsc4I CCNNNNNNNGG 6 cut(s) 55, 167, 274, 275, 355, 1008
Bse3DI GCAATG 2 cut(s) 819, 1163
Bse8I GATNNNNATC 1 cut(s) 1074
BseBI CCWGG 1 cut(s) 259
BseDI CCNNGG 2 cut(s) 946, 1079
BseGI GGATG 4 cut(s) 386, 649, 772, 874
BseJI GATNNNNATC 1 cut(s) 1074
BseLI CCNNNNNNNGG 6 cut(s) 55, 167, 274, 275, 355, 1008
BseMI GCAATG 2 cut(s) 819, 1163
BseMII CTCAG 2 cut(s) 84, 156
BseRI GAGGAG 2 cut(s) 110, 984
BseXI GCAGC 1 cut(s) 97
BseYI CCCAGC 1 cut(s) 560
BshFI GGCC 2 cut(s) 326, 1051
BsiHKCI CYCGRG 1 cut(s) 1079
BsiSI CCGG 2 cut(s) 323, 1080
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 6 cut(s) 55, 167, 274, 275, 355, 1008
BsmAI GTCTC 2 cut(s) 92, 160
BsmFI GGGAC 1 cut(s) 359
BsnI GGCC 2 cut(s) 326, 1051
Bso31I GGTCTC 2 cut(s) 92, 160
BsoBI CYCGRG 1 cut(s) 1079
Bsp1286I GDGCHC 1 cut(s) 1200
Bsp143I GATC 4 cut(s) 529, 699, 1069, 1075
Bsp1720I GCTNAGC 1 cut(s) 263
Bsp19I CCATGG 1 cut(s) 946
BspACI CCGC 4 cut(s) 493, 538, 618, 764
BspANI GGCC 2 cut(s) 326, 1051
BspCNI CTCAG 2 cut(s) 85, 155
BspHI TCATGA 1 cut(s) 1035
BspLI GGNNCC 2 cut(s) 347, 566
BspPI GGATC 1 cut(s) 1070
BspTNI GGTCTC 2 cut(s) 92, 160
BsrBI CCGCTC 1 cut(s) 538
BsrDI GCAATG 2 cut(s) 819, 1163
BssECI CCNNGG 2 cut(s) 946, 1079
BssMI GATC 4 cut(s) 529, 699, 1069, 1075
BssT1I CCWWGG 1 cut(s) 946
Bst2UI CCWGG 1 cut(s) 259
Bst4CI ACNGT 6 cut(s) 273, 546, 624, 793, 958, 1137
BstC8I GCNNGC 2 cut(s) 745, 914
BstDEI CTNAG 5 cut(s) 93, 142, 263, 1085, 1119
BstDSI CCRYGG 1 cut(s) 946
BstF5I GGATG 4 cut(s) 386, 649, 772, 874
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 4 cut(s) 532, 702, 1072, 1078
BstMAI GTCTC 2 cut(s) 92, 160
BstMBI GATC 4 cut(s) 529, 699, 1069, 1075
BstMWI GCNNNNNNNGC 1 cut(s) 1195
BstNI CCWGG 1 cut(s) 259
BstNSI RCATGY 2 cut(s) 916, 1127
BstSCI CCNGG 3 cut(s) 257, 1078, 1079
BstSFI CTRYAG 1 cut(s) 304
BstV1I GCAGC 1 cut(s) 97
BstV2I GAAGAC 1 cut(s) 777
BsuI GTATCC 1 cut(s) 534
BsuRI GGCC 2 cut(s) 326, 1051
BtgI CCRYGG 1 cut(s) 946
BtsCI GGATG 4 cut(s) 386, 649, 772, 874
BtsIMutI CAGTG 2 cut(s) 702, 1133
Cac8I GCNNGC 2 cut(s) 745, 914
CciI TCATGA 1 cut(s) 1035
CfoI GCGC 1 cut(s) 579
Cfr13I GGNCC 2 cut(s) 255, 346
Cfr9I CCCGGG 1 cut(s) 1079
CviAII CATG 9 cut(s) 51, 467, 825, 913, 927, 947, 1008, 1036, 1124
DdeI CTNAG 5 cut(s) 93, 142, 263, 1085, 1119
DpnI GATC 4 cut(s) 531, 701, 1071, 1077
DpnII GATC 4 cut(s) 529, 699, 1069, 1075
EaeI YGGCCR 2 cut(s) 324, 1049
EciI GGCGGA 3 cut(s) 482, 633, 779
Eco130I CCWWGG 1 cut(s) 946
Eco24I GRGCYC 1 cut(s) 1200
Eco31I GGTCTC 2 cut(s) 92, 160
Eco47I GGWCC 2 cut(s) 255, 346
Eco88I CYCGRG 1 cut(s) 1079
EcoRII CCWGG 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 946
EcoT22I ATGCAT 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 1200
ErhI CCWWGG 1 cut(s) 946
FaeI CATG 9 cut(s) 54, 470, 828, 916, 930, 950, 1011, 1039, 1127
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FaqI GGGAC 1 cut(s) 359
FatI CATG 9 cut(s) 50, 466, 824, 912, 926, 946, 1007, 1035, 1123
FauNDI CATATG 3 cut(s) 26, 79, 907
FbaI TGATCA 1 cut(s) 699
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 4 cut(s) 393, 656, 779, 881
FriOI GRGCYC 1 cut(s) 1200
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 2 cut(s) 222, 728
GlaI GCGC 1 cut(s) 578
GluI GCNGC 1 cut(s) 111
GsaI CCCAGC 1 cut(s) 564
HaeIII GGCC 2 cut(s) 326, 1051
HapII CCGG 2 cut(s) 323, 1080
HhaI GCGC 1 cut(s) 579
Hin1II CATG 9 cut(s) 54, 470, 828, 916, 930, 950, 1011, 1039, 1127
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HinfI GANTC 3 cut(s) 31, 89, 610
HpaII CCGG 2 cut(s) 323, 1080
HphI GGTGA 3 cut(s) 98, 150, 763
Hpy188I TCNGA 4 cut(s) 36, 94, 145, 650
Hpy188III TCNNGA 8 cut(s) 181, 521, 533, 683, 728, 737, 1036, 1073
HpyAV CCTTC 5 cut(s) 400, 509, 598, 667, 1012
HpyCH4III ACNGT 6 cut(s) 273, 546, 624, 793, 958, 1137
HpyCH4V TGCA 7 cut(s) 197, 460, 747, 824, 872, 982, 1094
HpyF10VI GCNNNNNNNGC 1 cut(s) 1195
HpyF3I CTNAG 5 cut(s) 93, 142, 263, 1085, 1119
Hsp92II CATG 9 cut(s) 54, 470, 828, 916, 930, 950, 1011, 1039, 1127
HspAI GCGC 1 cut(s) 577
Ksp22I TGATCA 1 cut(s) 699
Kzo9I GATC 4 cut(s) 529, 699, 1069, 1075
LmnI GCTCC 2 cut(s) 325, 923
LpnPI CCDG 9 cut(s) 244, 271, 297, 327, 336, 516, 546, 1093, 1125
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 6 cut(s) 184, 376, 682, 859, 1081, 1198
MaeI CTAG 2 cut(s) 222, 728
MaeIII GTNAC 6 cut(s) 73, 86, 290, 546, 624, 751
MalI GATC 4 cut(s) 531, 701, 1071, 1077
MbiI CCGCTC 1 cut(s) 538
MboI GATC 4 cut(s) 529, 699, 1069, 1075
MboII GAAGA 6 cut(s) 237, 343, 491, 782, 963, 1056
MfeI CAATTG 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 1200
MlsI TGGCCA 1 cut(s) 1051
MluCI AATT 6 cut(s) 4, 116, 214, 446, 516, 1059
MluNI TGGCCA 1 cut(s) 1051
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 2 cut(s) 148, 579
Mox20I TGGCCA 1 cut(s) 1051
Mph1103I ATGCAT 1 cut(s) 199
MscI TGGCCA 1 cut(s) 1051
MslI CAYNNNNRTG 1 cut(s) 465
Msp20I TGGCCA 1 cut(s) 1051
MspI CCGG 2 cut(s) 323, 1080
MspR9I CCNGG 3 cut(s) 259, 1080, 1081
MunI CAATTG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 259
MwoI GCNNNNNNNGC 1 cut(s) 1195
NciI CCSGG 2 cut(s) 1080, 1081
NcoI CCATGG 1 cut(s) 946
NdeI CATATG 3 cut(s) 26, 79, 907
NdeII GATC 4 cut(s) 529, 699, 1069, 1075
NlaIII CATG 9 cut(s) 54, 470, 828, 916, 930, 950, 1011, 1039, 1127
NlaIV GGNNCC 2 cut(s) 347, 566
NmuCI GTSAC 3 cut(s) 86, 290, 751
NsiI ATGCAT 1 cut(s) 199
NspI RCATGY 2 cut(s) 916, 1127
PaeI GCATGC 1 cut(s) 916
PagI TCATGA 1 cut(s) 1035
PcsI WCGNNNNNNNCGW 1 cut(s) 517
PfeI GAWTC 2 cut(s) 31, 610
PflFI GACNNNGTC 1 cut(s) 488
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
PsiI TTATAA 2 cut(s) 285, 1064
Psp6I CCWGG 1 cut(s) 257
PspFI CCCAGC 1 cut(s) 560
PspGI CCWGG 1 cut(s) 257
PspN4I GGNNCC 2 cut(s) 347, 566
PspPI GGNCC 2 cut(s) 255, 346
PsyI GACNNNGTC 1 cut(s) 488
RseI CAYNNNNRTG 1 cut(s) 465
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 4 cut(s) 529, 699, 1069, 1075
Sau96I GGNCC 2 cut(s) 255, 346
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 3 cut(s) 259, 1080, 1081
SduI GDGCHC 1 cut(s) 1200
SfaNI GCATC 6 cut(s) 184, 376, 682, 859, 1081, 1198
SfcI CTRYAG 1 cut(s) 304
SinI GGWCC 2 cut(s) 255, 346
SmaI CCCGGG 1 cut(s) 1081
SmiMI CAYNNNNRTG 1 cut(s) 465
SmlI CTYRAG 1 cut(s) 737
SmoI CTYRAG 1 cut(s) 737
SphI GCATGC 1 cut(s) 916
Sse9I AATT 6 cut(s) 4, 116, 214, 446, 516, 1059
SsiI CCGC 4 cut(s) 493, 538, 618, 764
SspI AATATT 1 cut(s) 1144
SspMI CTAG 2 cut(s) 222, 728
StyD4I CCNGG 3 cut(s) 257, 1078, 1079
StyI CCWWGG 1 cut(s) 946
TaaI ACNGT 6 cut(s) 273, 546, 624, 793, 958, 1137
TaqI TCGA 5 cut(s) 17, 404, 520, 795, 846
TasI AATT 6 cut(s) 4, 116, 214, 446, 516, 1059
TfiI GAWTC 2 cut(s) 31, 610
TscAI CASTG 2 cut(s) 709, 1140
TseFI GTSAC 3 cut(s) 86, 290, 751
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 3 cut(s) 86, 290, 751
TspDTI ATGAA 6 cut(s) 17, 783, 1002, 1024, 1165, 1169
TspGWI ACGGA 1 cut(s) 358
TspMI CCCGGG 1 cut(s) 1079
TspRI CASTG 2 cut(s) 709, 1140
Tth111I GACNNNGTC 1 cut(s) 488
VpaK11BI GGWCC 2 cut(s) 255, 346
XapI RAATTY 1 cut(s) 516
XbaI TCTAGA 1 cut(s) 727
XceI RCATGY 2 cut(s) 916, 1127
XcmI CCANNNNNNNNNTGG 1 cut(s) 57
XmaI CCCGGG 1 cut(s) 1079
XspI CTAG 2 cut(s) 222, 728
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.