Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010534

Physical Location & Seq

Genomic Coordinates Reverse (-)

55579376 .. 55582636

Gene Structure 3261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0385900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1692 bp

ATGTTACACGGCGGAGCCGCCGTCACAAAAACCTTCTCCTTCTTCATCAAAATCCCACTCCCCTTACTCTCCCGCCCTTCCCGCCGCGTTTTCCGGCCAATTCTCCACTACCCAAAACCCCAACCGACCCCAATCCCCACTTACAGTTCCTCCATGAACCAAAGACTCAACCTTTGCACTCTGCCCCTCTCTAAAGACCTCCCGCCGGCTCCGGCGCCTCCGCCGCGGCGGCTTTCCAACAAGGCTCTGAAGAAAGCGCGGCGGGAGTCGCCGGAGGCGGTGCTGAAGGTCAACCTGGACATGTGTTCCCGCCAAGGCCAAGTCGTCGAGGCTCTGAGGCTTTACGACGAGGCCAGGAGTAATGGGGTTCCGCTTAGCCTGTACCATTACAATGTGTTGTTGTATTTGTGTTCCTCTGATGGTGAAGATGCTGACGTGGGTTTGAGTAGAGGGTTCGAGATTTTCCGGCAGATGGTGGAGGATCAGGTGGTGCCGAATGAGGCCACGTTTACCAATGCGGCCAGGCTGTCGGCGGCTGCGGCGGACCCGGAAATGGCGTTTAGTTTGGTGAAGCAGATGAAGGGGTTTGGGATTCCGCCGAAGTTGAGGTCTTATGGGCCGGCATTGTTTGGTTTTTGTAAGAAGGGGGAGGCTGAGAGGGCTTATGAAGTTGATGCACACATGGTGGAGTCTGGGGTGGTGGCTGAGGAGCCGGAGATTTTGGCATTGTTGAAGATTAGTTCGGATTTGGGGAAGGGTGAGAAGGTTTATAAGATGATGCAGAGGTTGAGGAGTGGGGTGAGGCAGGTTGGGGAGAGTACTGCTGAGGTGGTTGAGGAGTGGTTTAAGTCTGAGGAGGCGGCAAGAGTTGGGGTGGAGAGGTGGGATGCGAAGAAGGTGAGGGAAGGGGTTGTGAGAGGAGGTGGGGGGTGGCATGGGCAAGGTTGGTTAGGGAGTGGGGAGTGGAAGGTGGTGAGGACTCAGATGGATGAAGCAGGGACGTGCTCTGCTTGCCGTCAGAAGCTTGTGTGTATTGATATTGATCCAAAAGAGACAGAGAACTTTGCTATGTCTTTGAGCAAGCTGGCTAACCAAAGGGAGGTCAGGGCTGATTTTGCTCGGTTCCAGGAGTGGCTTAAGCGACATAGTCCATTTGATGCTATTATAGACGGTGCCAATGTGGGTCTCACCAATCAACATAATTTCAGCTTTTCTCAGCTGAAAAATGTTGTGAATCGATTACAAAAAATGAGTCCAGCAAAGAGATTGCCACTTGTTATATTGCACAAAAGTCGTACGACCAGTGGCCCTGCTCAGAATCCTAGGAACAAGGCATTGTTAGAGACTTGGAAAAAGTCCGGGGCACTTTATGCTACTCCAACCGGTTCAAATGATGATTGGTACTGGTTGTATGCTGCTGTTAGTTGTAAGGGTTTACTGGTGACAAATGATGAGATGCGAGACCACTTGTTCCAACTTCTTGGAACTAACTTTTTCCCAAGATGGAAGGAAAAACATCAGGTTCGGGTGTCTGTCTCGAGGCTTGGACTAAATCTTCACATGCCACCTCCTTATTCAATTGTAATTCAGGAGTCGGAGAACGGGCGTTGGCACGTGCCAACCACCACAGGTGATGACATTGAGACCCCAAGGCAGTGGTTGTGTGCCACCAGAGCCAGGGATACAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

563

Amino Acids

63.17

Weight (kDa)

9.38

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	84 - 288	2.2e-74	Pentacotripeptide-repeat region of PRORP
PRORP	PF16953	329 - 555	1.1e-74	Protein-only RNase P
RNase_Zc3h12a	PF11977	388 - 491	5.9e-06	Zc3h12a-like Ribonuclease NYN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010534)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00491 FvH4_3g00491
malus_domestica	MD10G1337200.v1.1
prunus_persica	Prupe.4G006000_v2.0.a1 Prupe.4G006000_v2.0.a1 Prupe.4G006000_v2.0.a1 Prupe.4G006000_v2.0.a1 Prupe.4G006000_v2.0.a1 Prupe.4G006000_v2.0.a1
pyrus_communis	pycom10g28660
rosa_chinensis	RchiOBHm_Chr5g0000681
rosa_laevigata	RLG00000030887
rosa_multiflora	Rmu_sc0011992.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075530
rosa_rugosa	Rorug04G0385700 Rorug04G0385800 Rorug04G0385900
rosa_samantha	Rh5AG005800 Rh5BG007400 Rh5DG006100
rosa_wichuraiana	Rw5G000580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	771
Acc36I	ACCTGC	1 cut(s)	796
AccB1I	GGYRCC	3 cut(s)	214, 490, 1172
AccII	CGCG	3 cut(s)	87, 226, 259
AclWI	GGATC	2 cut(s)	489, 1037
AcoI	YGGCCR	2 cut(s)	95, 519
AcuI	CTGAAG	2 cut(s)	269, 305
AcvI	CACGTG	1 cut(s)	1615
AcyI	GRCGYC	1 cut(s)	215
AdeI	CACNNNGTG	1 cut(s)	685
AfaI	GTAC	4 cut(s)	383, 820, 1297, 1403
AfiI	CCNNNNNNNGG	5 cut(s)	205, 472, 553, 1099, 1677
AflII	CTTAAG	1 cut(s)	1136
AflIII	ACRYGT	1 cut(s)	300
AgeI	ACCGGT	1 cut(s)	1382
AgsI	TTSAA	3 cut(s)	733, 1389, 1578
AjiI	CACGTC	2 cut(s)	436, 1002
AjnI	CCWGG	5 cut(s)	294, 353, 521, 1125, 1676
AluBI	AGCT	4 cut(s)	1024, 1084, 1209, 1219
AluI	AGCT	4 cut(s)	1024, 1084, 1209, 1219
Alw21I	GWGCWC	1 cut(s)	1007
Alw26I	GTCTC	6 cut(s)	1046, 1190, 1337, 1455, 1540, 1637
AlwI	GGATC	2 cut(s)	489, 1037
Ama87I	CYCGRG	1 cut(s)	1537
AoxI	GGCC	7 cut(s)	95, 316, 351, 501, 519, 617, 1306
ApeKI	GCWGC	2 cut(s)	536, 1415
ArsI	GACNNNNNNTTYG	6 cut(s)	156, 188, 593, 625, 1237, 1269
AsiGI	ACCGGT	1 cut(s)	1382
AspA2I	CCTAGG	1 cut(s)	1322
AspLEI	GCGC	2 cut(s)	217, 259
AspS9I	GGNCC	3 cut(s)	544, 617, 1307
AsuC2I	CCSGG	2 cut(s)	548, 1360
AsuHPI	GGTGA	9 cut(s)	434, 580, 770, 811, 910, 985, 1180, 1453, 1643
AvaI	CYCGRG	1 cut(s)	1537
AvaII	GGWCC	1 cut(s)	544
AvrII	CCTAGG	1 cut(s)	1322
BaeGI	GKGCMC	1 cut(s)	1366
BanI	GGYRCC	3 cut(s)	214, 490, 1172
BbrPI	CACGTG	1 cut(s)	1615
Bbv12I	GWGCWC	1 cut(s)	1007
BbvCI	CCTCAGC	2 cut(s)	705, 825
BbvI	GCAGC	2 cut(s)	523, 1402
BccI	CCATC	4 cut(s)	413, 466, 979, 1497
BceAI	ACGGC	3 cut(s)	5, 25, 999
BcgI	CGANNNNNNTGC	2 cut(s)	1274, 1308
BciT130I	CCWGG	5 cut(s)	296, 355, 523, 1127, 1678
BciVI	GTATCC	1 cut(s)	1675
BcnI	CCSGG	2 cut(s)	548, 1360
BcoDI	GTCTC	6 cut(s)	1046, 1190, 1337, 1455, 1540, 1637
BfaI	CTAG	1 cut(s)	1323
BfoI	RGCGCY	1 cut(s)	218
BfrI	CTTAAG	1 cut(s)	1136
BfuAI	ACCTGC	1 cut(s)	796
BfuI	GTATCC	1 cut(s)	1675
BglI	GCCNNNNNGGC	1 cut(s)	229
BlnI	CCTAGG	1 cut(s)	1322
BlpI	GCTNAGC	1 cut(s)	374
BmcAI	AGTACT	1 cut(s)	820
Bme1390I	CCNGG	7 cut(s)	296, 355, 523, 548, 1127, 1360, 1678
Bme18I	GGWCC	1 cut(s)	544
BmeT110I	CYCGRG	1 cut(s)	1537
BmgBI	CACGTC	2 cut(s)	436, 1002
BmgT120I	GGNCC	3 cut(s)	544, 617, 1307
BmiI	GGNNCC	9 cut(s)	16, 210, 216, 369, 492, 546, 711, 1124, 1174
BmrFI	CCNGG	7 cut(s)	296, 355, 523, 548, 1127, 1360, 1678
BmsI	GCATC	6 cut(s)	418, 664, 768, 877, 1147, 1446
Bpu10I	CCTNAGC	2 cut(s)	705, 825
Bpu1102I	GCTNAGC	1 cut(s)	374
BpuMI	CCSGG	2 cut(s)	548, 1360
Bsa29I	ATCGAT	1 cut(s)	1237
BsaAI	YACGTR	1 cut(s)	1615
BsaBI	GATNNNNATC	1 cut(s)	1041
BsaHI	GRCGYC	1 cut(s)	215
BsaI	GGTCTC	3 cut(s)	1190, 1455, 1637
BsaJI	CCNNGG	6 cut(s)	224, 313, 1322, 1359, 1649, 1677
BsaWI	WCCGGW	1 cut(s)	1382
BsaXI	ACNNNNNCTCC	4 cut(s)	6, 36, 134, 164
Bsc4I	CCNNNNNNNGG	5 cut(s)	205, 472, 553, 1099, 1677
Bse118I	RCCGGY	3 cut(s)	205, 619, 1382
Bse1I	ACTGG	3 cut(s)	1302, 1409, 1443
Bse8I	GATNNNNATC	1 cut(s)	1041
BseBI	CCWGG	5 cut(s)	296, 355, 523, 1127, 1678
BseCI	ATCGAT	1 cut(s)	1237
BseDI	CCNNGG	6 cut(s)	224, 313, 1322, 1359, 1649, 1677
BseGI	GGATG	2 cut(s)	892, 994
BseJI	GATNNNNATC	1 cut(s)	1041
BseLI	CCNNNNNNNGG	5 cut(s)	205, 472, 553, 1099, 1677
BseMII	CTCAG	8 cut(s)	326, 645, 696, 816, 843, 995, 1229, 1328
BseNI	ACTGG	3 cut(s)	1302, 1409, 1443
BseRI	GAGGAG	5 cut(s)	722, 805, 851, 869, 933
BseSI	GKGCMC	1 cut(s)	1366
BseXI	GCAGC	2 cut(s)	523, 1402
Bsh1236I	CGCG	3 cut(s)	87, 226, 259
BshFI	GGCC	7 cut(s)	97, 318, 353, 503, 521, 619, 1308
BshNI	GGYRCC	3 cut(s)	214, 490, 1172
BshTI	ACCGGT	1 cut(s)	1382
BshVI	ATCGAT	1 cut(s)	1237
BsiHKAI	GWGCWC	1 cut(s)	1007
BsiHKCI	CYCGRG	1 cut(s)	1537
BsiWI	CGTACG	1 cut(s)	1295
BslFI	GGGAC	1 cut(s)	1012
BslI	CCNNNNNNNGG	5 cut(s)	205, 472, 553, 1099, 1677
BsmAI	GTCTC	6 cut(s)	1046, 1190, 1337, 1455, 1540, 1637
BsmFI	GGGAC	1 cut(s)	1012
BsnI	GGCC	7 cut(s)	97, 318, 353, 503, 521, 619, 1308
Bso31I	GGTCTC	3 cut(s)	1190, 1455, 1637
BsoBI	CYCGRG	1 cut(s)	1537
Bsp1286I	GDGCHC	2 cut(s)	1007, 1366
Bsp143I	GATC	2 cut(s)	481, 1042
Bsp1720I	GCTNAGC	1 cut(s)	374
BspANI	GGCC	7 cut(s)	97, 318, 353, 503, 521, 619, 1308
BspCNI	CTCAG	8 cut(s)	327, 646, 697, 817, 844, 994, 1228, 1327
BspDI	ATCGAT	1 cut(s)	1237
BspFNI	CGCG	3 cut(s)	87, 226, 259
BspLI	GGNNCC	9 cut(s)	16, 210, 216, 369, 492, 546, 711, 1124, 1174
BspMI	ACCTGC	1 cut(s)	796
BspPI	GGATC	2 cut(s)	489, 1037
BspT107I	GGYRCC	3 cut(s)	214, 490, 1172
BspTI	CTTAAG	1 cut(s)	1136
BspTNI	GGTCTC	3 cut(s)	1190, 1455, 1637
BsrFI	RCCGGY	3 cut(s)	205, 619, 1382
BsrI	ACTGG	3 cut(s)	1302, 1409, 1443
BssAI	RCCGGY	3 cut(s)	205, 619, 1382
BssECI	CCNNGG	6 cut(s)	224, 313, 1322, 1359, 1649, 1677
BssMI	GATC	2 cut(s)	481, 1042
BssNI	GRCGYC	1 cut(s)	215
BssT1I	CCWWGG	3 cut(s)	313, 1322, 1649
Bst2UI	CCWGG	5 cut(s)	296, 355, 523, 1127, 1678
Bst4CI	ACNGT	2 cut(s)	146, 1172
BstACI	GRCGYC	1 cut(s)	215
BstAFI	CTTAAG	1 cut(s)	1136
BstAPI	GCANNNNNTGC	1 cut(s)	1370
BstBAI	YACGTR	1 cut(s)	1615
BstC8I	GCNNGC	5 cut(s)	207, 621, 1012, 1082, 1086
BstDEI	CTNAG	9 cut(s)	335, 374, 654, 705, 825, 852, 981, 1215, 1314
BstDSI	CCRYGG	1 cut(s)	224
BstF5I	GGATG	2 cut(s)	892, 994
BstFNI	CGCG	3 cut(s)	87, 226, 259
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	2 cut(s)	217, 259
BstKTI	GATC	2 cut(s)	484, 1045
BstMAI	GTCTC	6 cut(s)	1046, 1190, 1337, 1455, 1540, 1637
BstMBI	GATC	2 cut(s)	481, 1042
BstNI	CCWGG	5 cut(s)	296, 355, 523, 1127, 1678
BstNSI	RCATGY	2 cut(s)	304, 1564
BstSCI	CCNGG	7 cut(s)	294, 353, 521, 546, 1125, 1358, 1676
BstSLI	GKGCMC	1 cut(s)	1366
BstUI	CGCG	3 cut(s)	87, 226, 259
BstV1I	GCAGC	2 cut(s)	523, 1402
BstXI	CCANNNNNNTGG	2 cut(s)	1481, 1656
Bsu15I	ATCGAT	1 cut(s)	1237
BsuI	GTATCC	1 cut(s)	1675
BsuRI	GGCC	7 cut(s)	97, 318, 353, 503, 521, 619, 1308
BsuTUI	ATCGAT	1 cut(s)	1237
BtgI	CCRYGG	1 cut(s)	224
BtrI	CACGTC	2 cut(s)	436, 1002
BtsCI	GGATG	2 cut(s)	892, 994
BtsI	GCAGTG	1 cut(s)	1661
BtsIMutI	CAGTG	2 cut(s)	1309, 1661
BveI	ACCTGC	1 cut(s)	796
Cac8I	GCNNGC	5 cut(s)	207, 621, 1012, 1082, 1086
CfoI	GCGC	2 cut(s)	217, 259
Cfr10I	RCCGGY	3 cut(s)	205, 619, 1382
Cfr13I	GGNCC	3 cut(s)	544, 617, 1307
Cfr42I	CCGCGG	1 cut(s)	227
ClaI	ATCGAT	1 cut(s)	1237
Csp6I	GTAC	4 cut(s)	382, 819, 1296, 1402
CspAI	ACCGGT	1 cut(s)	1382
CviAII	CATG	5 cut(s)	154, 301, 682, 935, 1561
CviQI	GTAC	4 cut(s)	382, 819, 1296, 1402
DdeI	CTNAG	9 cut(s)	335, 374, 654, 705, 825, 852, 981, 1215, 1314
DinI	GGCGCC	1 cut(s)	216
DpnI	GATC	2 cut(s)	483, 1044
DpnII	GATC	2 cut(s)	481, 1042
DraIII	CACNNNGTG	1 cut(s)	685
EaeI	YGGCCR	2 cut(s)	95, 519
EciI	GGCGGA	4 cut(s)	27, 210, 557, 585
Eco130I	CCWWGG	3 cut(s)	313, 1322, 1649
Eco31I	GGTCTC	3 cut(s)	1190, 1455, 1637
Eco47I	GGWCC	1 cut(s)	544
Eco57I	CTGAAG	2 cut(s)	269, 305
Eco72I	CACGTG	1 cut(s)	1615
Eco88I	CYCGRG	1 cut(s)	1537
EcoRII	CCWGG	5 cut(s)	294, 353, 521, 1125, 1676
EcoT14I	CCWWGG	3 cut(s)	313, 1322, 1649
EgeI	GGCGCC	1 cut(s)	216
EheI	GGCGCC	1 cut(s)	216
ErhI	CCWWGG	3 cut(s)	313, 1322, 1649
FaeI	CATG	5 cut(s)	157, 304, 685, 938, 1564
FaqI	GGGAC	1 cut(s)	1012
FatI	CATG	5 cut(s)	153, 300, 681, 934, 1560
FauI	CCCGC	5 cut(s)	80, 89, 210, 255, 317
FokI	GGATG	2 cut(s)	899, 1001
FspBI	CTAG	1 cut(s)	1323
GlaI	GCGC	2 cut(s)	216, 258
HaeII	RGCGCY	1 cut(s)	218
HaeIII	GGCC	7 cut(s)	97, 318, 353, 503, 521, 619, 1308
HhaI	GCGC	2 cut(s)	217, 259
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	5 cut(s)	157, 304, 685, 938, 1564
Hin6I	GCGC	2 cut(s)	215, 257
HinP1I	GCGC	2 cut(s)	215, 257
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HindIII	AAGCTT	1 cut(s)	1022
HinfI	GANTC	9 cut(s)	165, 266, 592, 689, 979, 1234, 1252, 1318, 1592
HphI	GGTGA	9 cut(s)	434, 580, 770, 811, 910, 985, 1180, 1453, 1643
Hpy166II	GTNNAC	3 cut(s)	292, 510, 1436
Hpy188I	TCNGA	9 cut(s)	249, 336, 418, 745, 853, 984, 1020, 1317, 1597
Hpy188III	TCNNGA	3 cut(s)	457, 1537, 1589
Hpy8I	GTNNAC	3 cut(s)	292, 510, 1436
Hpy99I	CGWCG	2 cut(s)	329, 350
HpyCH4III	ACNGT	2 cut(s)	146, 1172
HpyCH4IV	ACGT	4 cut(s)	435, 506, 1001, 1614
HpyCH4V	TGCA	4 cut(s)	177, 677, 781, 1285
HpyF3I	CTNAG	9 cut(s)	335, 374, 654, 705, 825, 852, 981, 1215, 1314
HpySE526I	ACGT	4 cut(s)	435, 506, 1001, 1614
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	5 cut(s)	157, 304, 685, 938, 1564
HspAI	GCGC	2 cut(s)	215, 257
KasI	GGCGCC	1 cut(s)	214
KroI	GCCGGC	2 cut(s)	205, 619
KroNI	GCCGGC	2 cut(s)	207, 621
KspI	CCGCGG	1 cut(s)	227
Kzo9I	GATC	2 cut(s)	481, 1042
LmnI	GCTCC	3 cut(s)	14, 214, 709
Lsp1109I	GCAGC	2 cut(s)	523, 1402
LweI	GCATC	6 cut(s)	418, 664, 768, 877, 1147, 1446
MaeI	CTAG	1 cut(s)	1323
MaeII	ACGT	4 cut(s)	435, 506, 1001, 1614
MaeIII	GTNAC	3 cut(s)	3, 22, 1441
MalI	GATC	2 cut(s)	483, 1044
MboI	GATC	2 cut(s)	481, 1042
MboII	GAAGA	6 cut(s)	34, 262, 437, 745, 904, 1547
MfeI	CAATTG	1 cut(s)	1578
MhlI	GDGCHC	2 cut(s)	1007, 1366
MluCI	AATT	4 cut(s)	99, 1201, 1578, 1584
Mly113I	GGCGCC	1 cut(s)	215
MlyI	GAGTC	6 cut(s)	159, 275, 698, 973, 1261, 1601
MmeI	TCCRAC	4 cut(s)	261, 1403, 1498, 1575
MroNI	GCCGGC	2 cut(s)	205, 619
MseI	TTAA	2 cut(s)	846, 1137
MslI	CAYNNNNRTG	1 cut(s)	390
MspA1I	CMGCKG	2 cut(s)	226, 1219
MspCI	CTTAAG	1 cut(s)	1136
MspR9I	CCNGG	7 cut(s)	296, 355, 523, 548, 1127, 1360, 1678
MunI	CAATTG	1 cut(s)	1578
MvaI	CCWGG	5 cut(s)	296, 355, 523, 1127, 1678
MvnI	CGCG	3 cut(s)	87, 226, 259
NaeI	GCCGGC	2 cut(s)	207, 621
NarI	GGCGCC	1 cut(s)	215
NciI	CCSGG	2 cut(s)	548, 1360
NdeII	GATC	2 cut(s)	481, 1042
NgoMIV	GCCGGC	2 cut(s)	205, 619
NlaIII	CATG	5 cut(s)	157, 304, 685, 938, 1564
NlaIV	GGNNCC	9 cut(s)	16, 210, 216, 369, 492, 546, 711, 1124, 1174
NmuCI	GTSAC	2 cut(s)	22, 1441
NspI	RCATGY	2 cut(s)	304, 1564
PaeR7I	CTCGAG	1 cut(s)	1537
PciI	ACATGT	1 cut(s)	300
PdiI	GCCGGC	2 cut(s)	207, 621
PfeI	GAWTC	3 cut(s)	592, 1234, 1318
Pfl23II	CGTACG	1 cut(s)	1295
PflFI	GACNNNGTC	1 cut(s)	1146
PfoI	TCCNGGA	1 cut(s)	1125
PinAI	ACCGGT	1 cut(s)	1382
PleI	GAGTC	6 cut(s)	159, 274, 697, 973, 1260, 1600
PluTI	GGCGCC	1 cut(s)	218
PmaCI	CACGTG	1 cut(s)	1615
PmlI	CACGTG	1 cut(s)	1615
PpsI	GAGTC	6 cut(s)	159, 274, 697, 973, 1260, 1600
Ppu21I	YACGTR	1 cut(s)	1615
PscI	ACATGT	1 cut(s)	300
PsiI	TTATAA	1 cut(s)	771
Psp6I	CCWGG	5 cut(s)	294, 353, 521, 1125, 1676
PspCI	CACGTG	1 cut(s)	1615
PspGI	CCWGG	5 cut(s)	294, 353, 521, 1125, 1676
PspLI	CGTACG	1 cut(s)	1295
PspN4I	GGNNCC	9 cut(s)	16, 210, 216, 369, 492, 546, 711, 1124, 1174
PspPI	GGNCC	3 cut(s)	544, 617, 1307
PsyI	GACNNNGTC	1 cut(s)	1146
PvuII	CAGCTG	1 cut(s)	1219
RsaI	GTAC	4 cut(s)	383, 820, 1297, 1403
RsaNI	GTAC	4 cut(s)	382, 819, 1296, 1402
RseI	CAYNNNNRTG	1 cut(s)	390
SacII	CCGCGG	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	846, 1137
Sau3AI	GATC	2 cut(s)	481, 1042
Sau96I	GGNCC	3 cut(s)	544, 617, 1307
ScaI	AGTACT	1 cut(s)	820
SchI	GAGTC	6 cut(s)	159, 275, 698, 973, 1261, 1601
ScrFI	CCNGG	7 cut(s)	296, 355, 523, 548, 1127, 1360, 1678
SduI	GDGCHC	2 cut(s)	1007, 1366
SfaNI	GCATC	6 cut(s)	418, 664, 768, 877, 1147, 1446
SfoI	GGCGCC	1 cut(s)	216
Sfr274I	CTCGAG	1 cut(s)	1537
Sfr303I	CCGCGG	1 cut(s)	227
SgrBI	CCGCGG	1 cut(s)	227
SinI	GGWCC	1 cut(s)	544
SlaI	CTCGAG	1 cut(s)	1537
SmiMI	CAYNNNNRTG	1 cut(s)	390
SmlI	CTYRAG	2 cut(s)	1136, 1537
SmoI	CTYRAG	2 cut(s)	1136, 1537
Sse9I	AATT	4 cut(s)	99, 1201, 1578, 1584
SspDI	GGCGCC	1 cut(s)	214
SspMI	CTAG	1 cut(s)	1323
StyD4I	CCNGG	7 cut(s)	294, 353, 521, 546, 1125, 1358, 1676
StyI	CCWWGG	3 cut(s)	313, 1322, 1649
TaaI	ACNGT	2 cut(s)	146, 1172
TaiI	ACGT	4 cut(s)	438, 509, 1004, 1617
TaqI	TCGA	4 cut(s)	327, 456, 1237, 1538
TasI	AATT	4 cut(s)	99, 1201, 1578, 1584
TatI	WGTACW	1 cut(s)	818
TfiI	GAWTC	3 cut(s)	592, 1234, 1318
Tru1I	TTAA	2 cut(s)	846, 1137
Tru9I	TTAA	2 cut(s)	846, 1137
TscAI	CASTG	2 cut(s)	1309, 1661
TseFI	GTSAC	2 cut(s)	22, 1441
TseI	GCWGC	2 cut(s)	536, 1415
Tsp45I	GTSAC	2 cut(s)	22, 1441
TspDTI	ATGAA	5 cut(s)	34, 170, 593, 681, 1005
TspRI	CASTG	2 cut(s)	1309, 1661
Tth111I	GACNNNGTC	1 cut(s)	1146
Vha464I	CTTAAG	1 cut(s)	1136
VpaK11BI	GGWCC	1 cut(s)	544
XceI	RCATGY	2 cut(s)	304, 1564
XhoI	CTCGAG	1 cut(s)	1537
XmaJI	CCTAGG	1 cut(s)	1322
XspI	CTAG	1 cut(s)	1323
ZrmI	AGTACT	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.