Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010534

Physical Location & Seq

Genomic Coordinates Forward (+)

443040 .. 445289

Gene Structure 2250 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030887

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1806 bp

ATGAATTGTATGCCATCGAAAAATATATGGATTCGGCGGCAACAATGCCCATGTGGGGATTGGAAATGTTATGTTACATATGAGGGAGACTCTGAAGAGACCTCTCTTGCAGCCCAATTGGTAAAGAATGATACTTCAACCTCAGAAGCTATGGTTTCACCTTACGTTGGAATGGTGTTTAAGAGTGATGATGATGCATTTGAGTATTATGGCAATTTCGCTAGAAAAAATGGGTTTTCTATTAGGAAAGAGAGGTCCAGACTTAGCCCACAGTTGGGAATTTATAAGCGTGACTTTGTTTGCTATCGGTCTGGGTTTGCTCCGGCCAAGAAGAAGCCGACAGGGGAACACCATAGGGATAGGAAGTCGGTTCGGTGTGGATGTGATGCAAAAATGTATTTGTCAAAGGAGGTTGTTGATGGGGTTTCTCAATGGTTTGTTGTCCAATTTAGTAACGTGCATAATCATGAGCTTTTGGAAGATGATCAAGTACGCCTCCTTCCTGCTTATCGTAAAATTCAAGAGGCGGATCAACAGCGGATACTGTTACTTTCTAAAGCTGGGTTCCCTATACATCGGATAGTGAAGGTGTTGGAGTTGGAAAAGGGGATTCAAGGTGGACAGTTGCCCTTTTTAGAGAGGGATGTCAGAAACTTTGTCCAAAATCGTAAGAAGGTTGTTCAAGAAAATGATGCCTTGATCACTGAAAAAAGGGAAAATGATACACTAGAACTTCTTGAGGCATGCAAGACTTTTGTTCGTTTCATGAGAGGAAGATGGCCACAAACAATTATAACTGATCTTGATACCGGGCTTAGAGATGCAATAACCAGTGAACTGCCTAACACTAAGCATGTCATTTCTCTGTGGAATATTCTTCCAAAGGTATCCAGCTGGTTCTCTGTATCACTTGGATCTCGATATGCAGAGTTTAAATCTGAGCTTGACGTTTTATATCGGGTGGAGAGTACAGAGGATTTTGAACTCCAATGGAATCAAATGAATTTAATATATGGCTTATCTACAGATAAGCACATTGCTTTACTTCATTCATTTCGGGCATCTTGGGCTCTGTGCTATATGAGGGGTTGCTTTGTCGCTAGAATGGCAACAACAGATTATTCAAAGTCTATAGAAGCATTCTTAAAAGGTGTTTTCAGCACACAAACATGTCTGCGCAGCTTTTTCGAGCAGGTTGGTATTTCTGCCAATTTTCAAAATCAGGCACGTCGAGAGATGCAGTATATACATACAAAAACGTGCATTCCCATTGAAGAGCACGCAAGGAGTATTTTGACGCCTTTTGCCTTCAATGCTTTGCAGCATGAGCTTGTGCTTGCCATGCAGTATGCAGTATCTGAAATGCCCAATGGATCATGTATTGTTCGCCATTTCAAGGAGATAGATGGAGAACGTCTCGTGATTTGGATACCAGAAGATGAACAGATTCACTGTTCCTGTAAAGAGTTTGAATCTTCAGGACTGCTGTGCAGACATTTGTTGCGGGTATTTATAGTAAAGAACTACTTTCAGCTTCCTGACAAGTACTATTTGAACAGATGGCGGAGAGAAAGCTCTCTTGATTTTTATGATCCCCACATTACTCAAAATAGTGATGATCAATGGTATCAAGATTATCAGTGTCTGGCTGAAACGCTGTTTACAGAATCTTCGATCACAAAGGAGCGTTCTGAGTATGTTCAAAGGGAAGTGACAACACATCTCACAAGGATTCTTAATGACGTTAGAAACATGCCAGAATCTGAAGGAGTCGCTATGGATCTGACATTTTCCCCTGCTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

602

Amino Acids

69.95

Weight (kDa)

6.62

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	68 - 159	1.8e-22	FAR1 DNA-binding domain
HTH_FAR1	PF26175	172 - 226	2.2e-25	FAR1 HTH-like domain
MULE	PF10551	222 - 293	7.4e-07	MULE transposase domain
SWIM	PF04434	480 - 508	2.8e-07	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010534)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00491 FvH4_3g00491
malus_domestica	MD10G1337200.v1.1
prunus_persica	Prupe.4G006000_v2.0.a1 Prupe.4G006000_v2.0.a1 Prupe.4G006000_v2.0.a1 Prupe.4G006000_v2.0.a1 Prupe.4G006000_v2.0.a1 Prupe.4G006000_v2.0.a1
pyrus_communis	pycom10g28660
rosa_chinensis	RchiOBHm_Chr5g0000681
rosa_laevigata	RLG00000030887
rosa_multiflora	Rmu_sc0011992.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075530
rosa_rugosa	Rorug04G0385700 Rorug04G0385800 Rorug04G0385900
rosa_samantha	Rh5AG005800 Rh5BG007400 Rh5DG006100
rosa_wichuraiana	Rw5G000580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	285, 794
Acc16I	TGCGCA	1 cut(s)	1178
Acc36I	ACCTGC	1 cut(s)	1183
AciI	CCGC	5 cut(s)	37, 527, 538, 1504, 1564
AclWI	GGATC	5 cut(s)	537, 922, 1381, 1586, 1788
AcoI	YGGCCR	2 cut(s)	324, 779
AcsI	RAATTY	3 cut(s)	279, 516, 1003
AcuI	CTGAAG	3 cut(s)	114, 1461, 1785
AcyI	GRCGYC	1 cut(s)	1298
AfaI	GTAC	3 cut(s)	492, 970, 1547
AfiI	CCNNNNNNNGG	5 cut(s)	55, 167, 274, 275, 1396
AflIII	ACRYGT	1 cut(s)	1169
AjiI	CACGTC	1 cut(s)	1229
AluBI	AGCT	9 cut(s)	149, 472, 560, 894, 943, 1182, 1330, 1534, 1575
AluI	AGCT	9 cut(s)	149, 472, 560, 894, 943, 1182, 1330, 1534, 1575
Alw21I	GWGCWC	1 cut(s)	1281
Alw26I	GTCTC	3 cut(s)	81, 92, 1421
AlwI	GGATC	5 cut(s)	537, 922, 1381, 1586, 1788
AlwNI	CAGNNNCTG	3 cut(s)	1358, 1645, 1763
AoxI	GGCC	2 cut(s)	324, 779
ApeKI	GCWGC	3 cut(s)	110, 1179, 1321
ApoI	RAATTY	3 cut(s)	279, 516, 1003
Asp700I	GAANNNNTTC	1 cut(s)	1446
AspLEI	GCGC	1 cut(s)	1179
AspS9I	GGNCC	1 cut(s)	255
AsuC2I	CCSGG	1 cut(s)	811
AsuHPI	GGTGA	1 cut(s)	150
AvaII	GGWCC	1 cut(s)	255
BalI	TGGCCA	1 cut(s)	781
BanII	GRGCYC	1 cut(s)	1072
BarI	GAAGNNNNNNTAC	2 cut(s)	483, 515
BauI	CACGAG	1 cut(s)	1418
Bbv12I	GWGCWC	1 cut(s)	1281
BbvI	GCAGC	3 cut(s)	122, 1191, 1333
BccI	CCATC	5 cut(s)	22, 413, 771, 1400, 1554
BcgI	CGANNNNNNTGC	2 cut(s)	1168, 1202
BciVI	GTATCC	3 cut(s)	534, 898, 1422
BclI	TGATCA	3 cut(s)	484, 699, 1618
BcnI	CCSGG	1 cut(s)	811
BcoDI	GTCTC	3 cut(s)	81, 92, 1421
BfaI	CTAG	3 cut(s)	222, 728, 1101
BfmI	CTRYAG	2 cut(s)	1023, 1131
BfuAI	ACCTGC	1 cut(s)	1183
BfuI	GTATCC	3 cut(s)	534, 898, 1422
BisI	GCNGC	4 cut(s)	38, 111, 1180, 1322
BlsI	GCNGC	4 cut(s)	39, 112, 1181, 1323
BmcAI	AGTACT	1 cut(s)	1547
Bme1390I	CCNGG	1 cut(s)	811
Bme18I	GGWCC	1 cut(s)	255
BmgBI	CACGTC	1 cut(s)	1229
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	566
BmrFI	CCNGG	1 cut(s)	811
BmsI	GCATC	6 cut(s)	184, 376, 682, 811, 1070, 1227
BplI	GAGNNNNNCTC	4 cut(s)	74, 106, 1401, 1433
BpuEI	CTTGAG	1 cut(s)	758
BpuMI	CCSGG	1 cut(s)	811
BsaHI	GRCGYC	1 cut(s)	1298
BsaI	GGTCTC	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 167, 274, 275, 1396
Bse1I	ACTGG	1 cut(s)	831
Bse3DI	GCAATG	1 cut(s)	1035
BseGI	GGATG	2 cut(s)	386, 649
BseLI	CCNNNNNNNGG	5 cut(s)	55, 167, 274, 275, 1396
BseMI	GCAATG	1 cut(s)	1035
BseMII	CTCAG	3 cut(s)	156, 930, 1683
BseNI	ACTGG	1 cut(s)	831
BseXI	GCAGC	3 cut(s)	122, 1191, 1333
BseYI	CCCAGC	1 cut(s)	560
BsgI	GTGCAG	1 cut(s)	1510
BshFI	GGCC	2 cut(s)	326, 781
BsiHKAI	GWGCWC	1 cut(s)	1281
BsiSI	CCGG	2 cut(s)	323, 810
BslI	CCNNNNNNNGG	5 cut(s)	55, 167, 274, 275, 1396
BsmAI	GTCTC	3 cut(s)	81, 92, 1421
BsmBI	CGTCTC	1 cut(s)	1421
BsmI	GAATGC	2 cut(s)	1139, 1263
BsnI	GGCC	2 cut(s)	326, 781
Bso31I	GGTCTC	1 cut(s)	92
Bsp1286I	GDGCHC	2 cut(s)	1072, 1281
BspACI	CCGC	5 cut(s)	37, 527, 538, 1504, 1564
BspANI	GGCC	2 cut(s)	326, 781
BspCNI	CTCAG	3 cut(s)	155, 931, 1684
BspHI	TCATGA	2 cut(s)	466, 765
BspLI	GGNNCC	1 cut(s)	566
BspMI	ACCTGC	1 cut(s)	1183
BspPI	GGATC	5 cut(s)	537, 922, 1381, 1586, 1788
BspQI	GCTCTTC	1 cut(s)	1269
BspTNI	GGTCTC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	1035
BsrI	ACTGG	1 cut(s)	831
BssNI	GRCGYC	1 cut(s)	1298
BssSI	CACGAG	1 cut(s)	1418
Bst2BI	CACGAG	1 cut(s)	1418
Bst4CI	ACNGT	4 cut(s)	273, 546, 624, 1454
Bst6I	CTCTTC	2 cut(s)	90, 1269
BstACI	GRCGYC	1 cut(s)	1298
BstC8I	GCNNGC	3 cut(s)	745, 1281, 1338
BstDEI	CTNAG	6 cut(s)	142, 263, 815, 849, 939, 1692
BstF5I	GGATG	2 cut(s)	386, 649
BstHHI	GCGC	1 cut(s)	1179
BstMAI	GTCTC	3 cut(s)	81, 92, 1421
BstMWI	GCNNNNNNNGC	5 cut(s)	1067, 1106, 1313, 1327, 1342
BstNSI	RCATGY	4 cut(s)	747, 857, 1173, 1756
BstSCI	CCNGG	1 cut(s)	809
BstSFI	CTRYAG	2 cut(s)	1023, 1131
BstV1I	GCAGC	3 cut(s)	122, 1191, 1333
BstX2I	RGATCY	2 cut(s)	914, 1780
BstYI	RGATCY	2 cut(s)	914, 1780
BsuI	GTATCC	3 cut(s)	534, 898, 1422
BsuRI	GGCC	2 cut(s)	326, 781
BtrI	CACGTC	1 cut(s)	1229
BtsCI	GGATG	2 cut(s)	386, 649
BtsIMutI	CAGTG	4 cut(s)	702, 838, 1450, 1646
BveI	ACCTGC	1 cut(s)	1183
Cac8I	GCNNGC	3 cut(s)	745, 1281, 1338
CaiI	CAGNNNCTG	3 cut(s)	1358, 1645, 1763
CciI	TCATGA	2 cut(s)	466, 765
CfoI	GCGC	1 cut(s)	1179
Cfr13I	GGNCC	1 cut(s)	255
CseI	GACGC	1 cut(s)	1306
Csp6I	GTAC	3 cut(s)	491, 969, 1546
CviQI	GTAC	3 cut(s)	491, 969, 1546
DdeI	CTNAG	6 cut(s)	142, 263, 815, 849, 939, 1692
DraI	TTTAAA	1 cut(s)	934
EaeI	YGGCCR	2 cut(s)	324, 779
Eam1104I	CTCTTC	2 cut(s)	90, 1269
EarI	CTCTTC	2 cut(s)	90, 1269
EciI	GGCGGA	2 cut(s)	542, 1579
Eco24I	GRGCYC	1 cut(s)	1072
Eco31I	GGTCTC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	255
Eco57I	CTGAAG	3 cut(s)	114, 1461, 1785
EcoT22I	ATGCAT	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	1072
Esp3I	CGTCTC	1 cut(s)	1421
FalI	AAGNNNNNCTT	4 cut(s)	278, 310, 1511, 1543
FauI	CCCGC	1 cut(s)	1497
FauNDI	CATATG	1 cut(s)	79
FbaI	TGATCA	3 cut(s)	484, 699, 1618
Fnu4HI	GCNGC	4 cut(s)	38, 111, 1180, 1322
FokI	GGATG	2 cut(s)	393, 656
FriOI	GRGCYC	1 cut(s)	1072
Fsp4HI	GCNGC	4 cut(s)	38, 111, 1180, 1322
FspBI	CTAG	3 cut(s)	222, 728, 1101
FspI	TGCGCA	1 cut(s)	1178
GlaI	GCGC	1 cut(s)	1178
GluI	GCNGC	4 cut(s)	38, 111, 1180, 1322
GsaI	CCCAGC	1 cut(s)	564
HaeIII	GGCC	2 cut(s)	326, 781
HapII	CCGG	2 cut(s)	323, 810
HgaI	GACGC	1 cut(s)	1306
HhaI	GCGC	1 cut(s)	1179
Hin1I	GRCGYC	1 cut(s)	1298
Hin6I	GCGC	1 cut(s)	1177
HinP1I	GCGC	1 cut(s)	1177
HpaII	CCGG	2 cut(s)	323, 810
HphI	GGTGA	1 cut(s)	150
Hpy166II	GTNNAC	3 cut(s)	620, 836, 1662
Hpy188I	TCNGA	9 cut(s)	94, 145, 579, 650, 940, 1360, 1693, 1765, 1785
Hpy8I	GTNNAC	3 cut(s)	620, 836, 1662
Hpy99I	CGWCG	1 cut(s)	1233
HpyAV	CCTTC	5 cut(s)	509, 580, 667, 1318, 1760
HpyCH4III	ACNGT	4 cut(s)	273, 546, 624, 1454
HpyCH4IV	ACGT	7 cut(s)	165, 456, 948, 1228, 1259, 1414, 1743
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1067, 1106, 1313, 1327, 1342
HpyF3I	CTNAG	6 cut(s)	142, 263, 815, 849, 939, 1692
HpySE526I	ACGT	7 cut(s)	165, 456, 948, 1228, 1259, 1414, 1743
Hsp92I	GRCGYC	1 cut(s)	1298
HspAI	GCGC	1 cut(s)	1177
Ksp22I	TGATCA	3 cut(s)	484, 699, 1618
LguI	GCTCTTC	1 cut(s)	1269
LmnI	GCTCC	2 cut(s)	325, 1684
Lsp1109I	GCAGC	3 cut(s)	122, 1191, 1333
LweI	GCATC	6 cut(s)	184, 376, 682, 811, 1070, 1227
MaeI	CTAG	3 cut(s)	222, 728, 1101
MaeII	ACGT	7 cut(s)	165, 456, 948, 1228, 1259, 1414, 1743
MaeIII	GTNAC	5 cut(s)	73, 290, 452, 546, 1711
MboII	GAAGA	9 cut(s)	107, 343, 491, 786, 869, 1286, 1448, 1467, 1662
MfeI	CAATTG	1 cut(s)	116
MflI	RGATCY	2 cut(s)	914, 1780
MhlI	GDGCHC	2 cut(s)	1072, 1281
MlsI	TGGCCA	1 cut(s)	781
MluCI	AATT	9 cut(s)	4, 116, 214, 279, 446, 516, 789, 1003, 1210
MluNI	TGGCCA	1 cut(s)	781
MlyI	GAGTC	2 cut(s)	83, 1779
MmeI	TCCRAC	3 cut(s)	148, 573, 579
Mox20I	TGGCCA	1 cut(s)	781
Mph1103I	ATGCAT	1 cut(s)	199
MroXI	GAANNNNTTC	1 cut(s)	1446
MscI	TGGCCA	1 cut(s)	781
MseI	TTAA	6 cut(s)	180, 933, 1007, 1145, 1737, 1804
MslI	CAYNNNNRTG	2 cut(s)	465, 1168
Msp20I	TGGCCA	1 cut(s)	781
MspA1I	CMGCKG	2 cut(s)	538, 894
MspI	CCGG	2 cut(s)	323, 810
MspR9I	CCNGG	1 cut(s)	811
MunI	CAATTG	1 cut(s)	116
Mva1269I	GAATGC	2 cut(s)	1139, 1263
MwoI	GCNNNNNNNGC	5 cut(s)	1067, 1106, 1313, 1327, 1342
NciI	CCSGG	1 cut(s)	811
NdeI	CATATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	566
NmuCI	GTSAC	2 cut(s)	290, 1711
NsbI	TGCGCA	1 cut(s)	1178
NsiI	ATGCAT	1 cut(s)	199
NspI	RCATGY	4 cut(s)	747, 857, 1173, 1756
PaeI	GCATGC	1 cut(s)	747
PagI	TCATGA	2 cut(s)	466, 765
PciI	ACATGT	1 cut(s)	1169
PciSI	GCTCTTC	1 cut(s)	1269
PctI	GAATGC	2 cut(s)	1139, 1263
PdmI	GAANNNNTTC	1 cut(s)	1446
PfeI	GAWTC	8 cut(s)	31, 610, 994, 1447, 1472, 1667, 1732, 1760
PkrI	GCNGC	4 cut(s)	39, 112, 1181, 1323
PleI	GAGTC	2 cut(s)	83, 1778
PpsI	GAGTC	2 cut(s)	83, 1778
PscI	ACATGT	1 cut(s)	1169
PsiI	TTATAA	2 cut(s)	285, 794
PspFI	CCCAGC	1 cut(s)	560
PspN4I	GGNNCC	1 cut(s)	566
PspPI	GGNCC	1 cut(s)	255
PstNI	CAGNNNCTG	3 cut(s)	1358, 1645, 1763
PsuI	RGATCY	2 cut(s)	914, 1780
PvuII	CAGCTG	1 cut(s)	894
RsaI	GTAC	3 cut(s)	492, 970, 1547
RsaNI	GTAC	3 cut(s)	491, 969, 1546
RseI	CAYNNNNRTG	2 cut(s)	465, 1168
SapI	GCTCTTC	1 cut(s)	1269
SaqAI	TTAA	6 cut(s)	180, 933, 1007, 1145, 1737, 1804
SatI	GCNGC	4 cut(s)	38, 111, 1180, 1322
Sau96I	GGNCC	1 cut(s)	255
ScaI	AGTACT	1 cut(s)	1547
SchI	GAGTC	2 cut(s)	83, 1779
ScrFI	CCNGG	1 cut(s)	811
SduI	GDGCHC	2 cut(s)	1072, 1281
SfaNI	GCATC	6 cut(s)	184, 376, 682, 811, 1070, 1227
SfcI	CTRYAG	2 cut(s)	1023, 1131
SinI	GGWCC	1 cut(s)	255
SmiMI	CAYNNNNRTG	2 cut(s)	465, 1168
SmlI	CTYRAG	1 cut(s)	737
SmoI	CTYRAG	1 cut(s)	737
SphI	GCATGC	1 cut(s)	747
Sse9I	AATT	9 cut(s)	4, 116, 214, 279, 446, 516, 789, 1003, 1210
SsiI	CCGC	5 cut(s)	37, 527, 538, 1504, 1564
SspI	AATATT	1 cut(s)	874
SspMI	CTAG	3 cut(s)	222, 728, 1101
StyD4I	CCNGG	1 cut(s)	809
TaaI	ACNGT	4 cut(s)	273, 546, 624, 1454
TaiI	ACGT	7 cut(s)	168, 459, 951, 1231, 1262, 1417, 1746
TaqI	TCGA	5 cut(s)	17, 919, 1188, 1231, 1673
TaqII	GACCGA	1 cut(s)	297
TasI	AATT	9 cut(s)	4, 116, 214, 279, 446, 516, 789, 1003, 1210
TatI	WGTACW	2 cut(s)	968, 1545
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	8 cut(s)	31, 610, 994, 1447, 1472, 1667, 1732, 1760
Tru1I	TTAA	6 cut(s)	180, 933, 1007, 1145, 1737, 1804
Tru9I	TTAA	6 cut(s)	180, 933, 1007, 1145, 1737, 1804
TscAI	CASTG	4 cut(s)	709, 838, 1457, 1646
TseFI	GTSAC	2 cut(s)	290, 1711
TseI	GCWGC	3 cut(s)	110, 1179, 1321
Tsp45I	GTSAC	2 cut(s)	290, 1711
TspDTI	ATGAA	6 cut(s)	17, 754, 1016, 1037, 1041, 1455
TspRI	CASTG	4 cut(s)	709, 838, 1457, 1646
VpaK11BI	GGWCC	1 cut(s)	255
XapI	RAATTY	3 cut(s)	279, 516, 1003
XceI	RCATGY	4 cut(s)	747, 857, 1173, 1756
XcmI	CCANNNNNNNNNTGG	1 cut(s)	57
XmnI	GAANNNNTTC	1 cut(s)	1446
XspI	CTAG	3 cut(s)	222, 728, 1101
ZrmI	AGTACT	1 cut(s)	1547
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.