Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010534

Physical Location & Seq

Genomic Coordinates Forward (+)

55564230 .. 55564953

Gene Structure 724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0385700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGATGTGTTTATCAGTTTCAGATCGAGGGGAGGATACCCGGTTGAGTTTTGTGGATCATCTATCCGTAGCATTGGATCAGAATAAAATTTTCAGCTTTAGAGATGACAAAGACCTTAAGAAAGGAAACACCATTGCCCCAGAATTCCTGAAAGCAATCGAGGAGTCGAGGATGTCCCTTGTCATTCTTTCGCCAAACTATGCTTCTTCATCATGGTGCTTGGATGAGCTGGTGAAGATTCTCCATTGCAGACAAGATATAGGGCAAGTGCTCTTACCAATATTCTACCAAGTGCAACCATCTGATGTCCGGAACAGGAATGGAAGGCGCGAAGCAAATATTGTCAATGACATTGTTAAGTTTGTACTCAAATGTTTAAAATGGATGCGTGAAAAGGCAGGAAGAGAGAACTTTGTGAAGGAACTTAAAGACTTTGCTGCTGATGTGGAGACTGTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

153

Amino Acids

17.57

Weight (kDa)

6.73

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	7 - 129	9.4e-36	TIR domain
TIR_2	PF13676	10 - 100	2.8e-11	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010534)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00491 FvH4_3g00491
malus_domestica	MD10G1337200.v1.1
prunus_persica	Prupe.4G006000_v2.0.a1 Prupe.4G006000_v2.0.a1 Prupe.4G006000_v2.0.a1 Prupe.4G006000_v2.0.a1 Prupe.4G006000_v2.0.a1 Prupe.4G006000_v2.0.a1
pyrus_communis	pycom10g28660
rosa_chinensis	RchiOBHm_Chr5g0000681
rosa_laevigata	RLG00000030887
rosa_multiflora	Rmu_sc0011992.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075530
rosa_rugosa	Rorug04G0385700 Rorug04G0385800 Rorug04G0385900
rosa_samantha	Rh5AG005800 Rh5BG007400 Rh5DG006100
rosa_wichuraiana	Rw5G000580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	330
AccIII	TCCGGA	1 cut(s)	309
AclWI	GGATC	2 cut(s)	63, 84
AcsI	RAATTY	2 cut(s)	87, 143
AfaI	GTAC	1 cut(s)	366
AflII	CTTAAG	1 cut(s)	116
AjuI	GAANNNNNNNTTGG	2 cut(s)	187, 219
AluBI	AGCT	2 cut(s)	96, 229
AluI	AGCT	2 cut(s)	96, 229
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	2 cut(s)	63, 84
Aor13HI	TCCGGA	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	2 cut(s)	87, 143
AspLEI	GCGC	1 cut(s)	330
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	1 cut(s)	307
BciVI	GTATCC	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	443
BfrI	CTTAAG	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	28
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
Bme1390I	CCNGG	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	40
BsaWI	WCCGGW	1 cut(s)	309
Bse3DI	GCAATG	2 cut(s)	132, 244
BseAI	TCCGGA	1 cut(s)	309
BseGI	GGATG	3 cut(s)	177, 229, 390
BseMI	GCAATG	2 cut(s)	132, 244
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	424
Bsh1236I	CGCG	1 cut(s)	330
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	40, 310
BslFI	GGGAC	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp13I	TCCGGA	1 cut(s)	309
Bsp143I	GATC	3 cut(s)	22, 55, 76
BspEI	TCCGGA	1 cut(s)	309
BspFNI	CGCG	1 cut(s)	330
BspPI	GGATC	2 cut(s)	63, 84
BspTI	CTTAAG	1 cut(s)	116
BsrDI	GCAATG	2 cut(s)	132, 244
BssMI	GATC	3 cut(s)	22, 55, 76
Bst4CI	ACNGT	1 cut(s)	454
Bst6I	CTCTTC	1 cut(s)	397
BstAFI	CTTAAG	1 cut(s)	116
BstF5I	GGATG	3 cut(s)	177, 229, 390
BstFNI	CGCG	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	3 cut(s)	25, 58, 79
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	3 cut(s)	22, 55, 76
BstSCI	CCNGG	1 cut(s)	38
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	424
BsuI	GTATCC	1 cut(s)	28
BtsCI	GGATG	3 cut(s)	177, 229, 390
CfoI	GCGC	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	365
CviAII	CATG	1 cut(s)	213
CviJI	RGCY	2 cut(s)	96, 229
CviKI_1	RGCY	2 cut(s)	96, 229
CviQI	GTAC	1 cut(s)	365
DpnI	GATC	3 cut(s)	24, 57, 78
DpnII	GATC	3 cut(s)	22, 55, 76
DraI	TTTAAA	1 cut(s)	378
Eam1104I	CTCTTC	1 cut(s)	397
EarI	CTCTTC	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	143
FaeI	CATG	1 cut(s)	216
FaiI	YATR	3 cut(s)	201, 214, 260
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	1 cut(s)	212
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	3 cut(s)	184, 236, 397
Fsp4HI	GCNGC	1 cut(s)	438
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	1 cut(s)	438
HapII	CCGG	2 cut(s)	40, 310
HhaI	GCGC	1 cut(s)	330
Hin1II	CATG	1 cut(s)	216
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HinfI	GANTC	2 cut(s)	164, 238
HpaII	CCGG	2 cut(s)	40, 310
HphI	GGTGA	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	22, 81, 304
Hpy188III	TCNNGA	2 cut(s)	148, 310
HpyAV	CCTTC	2 cut(s)	318, 412
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4V	TGCA	2 cut(s)	249, 295
Hsp92II	CATG	1 cut(s)	216
HspAI	GCGC	1 cut(s)	328
Kpn2I	TCCGGA	1 cut(s)	309
Kzo9I	GATC	3 cut(s)	22, 55, 76
LpnPI	CCDG	7 cut(s)	53, 153, 161, 215, 301, 323, 384
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	1 cut(s)	375
MalI	GATC	3 cut(s)	24, 57, 78
MboI	GATC	3 cut(s)	22, 55, 76
MboII	GAAGA	3 cut(s)	198, 247, 414
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	2 cut(s)	87, 143
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	1 cut(s)	436
MnlI	CCTC	4 cut(s)	20, 25, 154, 162
MroI	TCCGGA	1 cut(s)	309
MseI	TTAA	4 cut(s)	117, 357, 377, 426
MslI	CAYNNNNRTG	1 cut(s)	214
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	2 cut(s)	40, 310
MspR9I	CCNGG	1 cut(s)	40
MvnI	CGCG	1 cut(s)	330
NciI	CCSGG	1 cut(s)	40
NdeII	GATC	3 cut(s)	22, 55, 76
NlaIII	CATG	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	439
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
RseI	CAYNNNNRTG	1 cut(s)	214
SaqAI	TTAA	4 cut(s)	117, 357, 377, 426
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	3 cut(s)	22, 55, 76
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	40
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	3 cut(s)	98, 117, 231
SfaNI	GCATC	1 cut(s)	375
SmiMI	CAYNNNNRTG	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	2 cut(s)	87, 143
SspI	AATATT	2 cut(s)	282, 340
StyD4I	CCNGG	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	454
TaqI	TCGA	3 cut(s)	25, 159, 167
TasI	AATT	2 cut(s)	87, 143
TatI	WGTACW	1 cut(s)	364
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	4 cut(s)	117, 357, 377, 426
Tru9I	TTAA	4 cut(s)	117, 357, 377, 426
TseI	GCWGC	1 cut(s)	437
TspDTI	ATGAA	1 cut(s)	198
TspGWI	ACGGA	1 cut(s)	55
Vha464I	CTTAAG	1 cut(s)	116
XapI	RAATTY	2 cut(s)	87, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.