Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012423

Physical Location & Seq

Genomic Coordinates Reverse (-)

367306 .. 368773

Gene Structure 1468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCTGTGTCCAAGTAATTGCAGAATAGTATTGCCACATCCGAGGAGTTGGAAAATGGCCTTTCATTCTGAGGAAGAAAAGGCTGAGGATTATCTTTTCAAGATTGTTCTAATTGGTGATTCGGCAGTGGGAAAATCTAATTTGCTTGCACGATTTGCTAGAAATGAGTTCTTTCCTAATTCAAAGTCAACTATAGGAGTAGAGTTCCAAACCCAAAAGATTGTTATTGATGGTAAAGAAGTCAAAGCACAGATATGGGACACTGCTGGTCAAGAGCGGTTCAGGGCTGTTACATCTGCATATTACAGAGGTGCTGTTGGTGCTCTTTTGGTTTATGATATCAGTAGGCATCAGACATTTGATAGTATCGGCAGATGGCTTAATGAGCTCCACACTCACTCCGACATGAATGTTGTAACGATACTTGTTGGTAACAAATCGGATCTCAAGGATGCCAGGGAGGTATCCACTGCTGAAGGCAAAGCCTTGGCAGAAGCTCAGGGTTTGTTTTTCATGGAGACATCTGCTCTTGACTCATCCAACGTTGCTGCCGCCTTTCAGACGGTAGTGAAGGAGATCTACAATATACTAAGTCGAAAAGTAATGATGTCCCAGGAGCTCAAGAAACAGGACCATAGTTGGGTGGGGACTGGCAAGACAGTGGTCATACAGGGAGATGGGAGCGAAGAAGCAGCAAGTACAGAGCCTAAGAAAGGTGGGTGCTGTTCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

245

Amino Acids

26.97

Weight (kDa)

6.6

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	32 - 191	1.7e-15	ADP-ribosylation factor family
Ras	PF00071	34 - 194	5.8e-62	Ras family
Roc	PF08477	34 - 148	4.7e-34	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47520
fragaria_vesca	FvH4_3g00730
malus_domestica	MD05G1360000.v1.1 MD10G1335600.v1.1
prunus_persica	Prupe.4G008200_v2.0.a1 Prupe.4G008200_v2.0.a1
pyrus_communis	pycom05g32500 pycom10g28520
rosa_chinensis	RchiOBHm_Chr5g0000971
rosa_laevigata	RLG00000030910
rosa_multiflora	Rmu_sc0000255.1_g000021
rosa_roxburghii	Rroxscaffold_1G00075300
rosa_rugosa	Rorug04G0388000 Rorug04G0388000
rosa_samantha	Rh5AG007700 Rh5BG009800 Rh5CG008400 Rh5DG008400
rosa_wichuraiana	Rw5G000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	277
AciI	CCGC	2 cut(s)	277, 552
AclI	AACGTT	1 cut(s)	543
AclWI	GGATC	1 cut(s)	450
AcuI	CTGAAG	1 cut(s)	495
AfaI	GTAC	1 cut(s)	700
AfiI	CCNNNNNNNGG	2 cut(s)	640, 713
AgsI	TTSAA	2 cut(s)	100, 183
AjnI	CCWGG	2 cut(s)	455, 612
AluBI	AGCT	3 cut(s)	388, 497, 619
AluI	AGCT	3 cut(s)	388, 497, 619
Alw21I	GWGCWC	3 cut(s)	325, 390, 621
Alw26I	GTCTC	1 cut(s)	512
AlwI	GGATC	1 cut(s)	450
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	2 cut(s)	548, 692
AspS9I	GGNCC	1 cut(s)	631
AsuHPI	GGTGA	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	631
BanII	GRGCYC	2 cut(s)	390, 621
BarI	GAAGNNNNNNTAC	2 cut(s)	563, 595
Bbv12I	GWGCWC	3 cut(s)	325, 390, 621
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	535, 704
BccI	CCATC	3 cut(s)	224, 369, 671
BciT130I	CCWGG	2 cut(s)	457, 614
BciVI	GTATCC	1 cut(s)	475
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	192
BfuI	GTATCC	1 cut(s)	475
BglII	AGATCT	1 cut(s)	576
BisI	GCNGC	3 cut(s)	549, 552, 693
BlsI	GCNGC	3 cut(s)	550, 553, 694
Bme1390I	CCNGG	2 cut(s)	457, 614
Bme18I	GGWCC	1 cut(s)	631
BmgT120I	GGNCC	1 cut(s)	631
BmrFI	CCNGG	2 cut(s)	457, 614
BmsI	GCATC	2 cut(s)	358, 442
BoxI	GACNNNNGTC	1 cut(s)	662
Bpu10I	CCTNAGC	2 cut(s)	84, 498
BpuEI	CTTGAG	2 cut(s)	431, 605
BsaJI	CCNNGG	4 cut(s)	41, 456, 486, 612
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	2 cut(s)	640, 713
Bse1I	ACTGG	1 cut(s)	655
BseBI	CCWGG	2 cut(s)	457, 614
BseDI	CCNNGG	4 cut(s)	41, 456, 486, 612
BseGI	GGATG	3 cut(s)	37, 457, 536
BseLI	CCNNNNNNNGG	2 cut(s)	640, 713
BseMII	CTCAG	3 cut(s)	60, 75, 512
BseNI	ACTGG	1 cut(s)	655
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	535, 704
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	3 cut(s)	325, 390, 621
BslFI	GGGAC	3 cut(s)	272, 595, 661
BslI	CCNNNNNNNGG	2 cut(s)	640, 713
BsmAI	GTCTC	1 cut(s)	512
BsmFI	GGGAC	3 cut(s)	272, 595, 661
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	3 cut(s)	325, 390, 621
Bsp143I	GATC	2 cut(s)	442, 576
BspACI	CCGC	2 cut(s)	277, 552
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	3 cut(s)	61, 76, 511
BspPI	GGATC	1 cut(s)	450
BsrBI	CCGCTC	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	655
BssECI	CCNNGG	4 cut(s)	41, 456, 486, 612
BssMI	GATC	2 cut(s)	442, 576
BssT1I	CCWWGG	1 cut(s)	486
Bst2UI	CCWGG	2 cut(s)	457, 614
Bst4CI	ACNGT	2 cut(s)	565, 661
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	6 cut(s)	69, 84, 498, 590, 708, 732
BstENI	CCTNNNNNAGG	1 cut(s)	711
BstF5I	GGATG	3 cut(s)	37, 457, 536
BstKTI	GATC	2 cut(s)	445, 579
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	2 cut(s)	442, 576
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 320, 385
BstNI	CCWGG	2 cut(s)	457, 614
BstPAI	GACNNNNGTC	1 cut(s)	662
BstSCI	CCNGG	2 cut(s)	455, 612
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	2 cut(s)	535, 704
BstX2I	RGATCY	2 cut(s)	442, 576
BstYI	RGATCY	2 cut(s)	442, 576
BsuI	GTATCC	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	3 cut(s)	37, 457, 536
BtsI	GCAGTG	3 cut(s)	132, 261, 468
BtsIMutI	CAGTG	4 cut(s)	132, 261, 468, 666
Cac8I	GCNNGC	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	631
Csp6I	GTAC	1 cut(s)	699
CviAII	CATG	2 cut(s)	406, 514
CviJI	RGCY	9 cut(s)	59, 83, 287, 379, 388, 485, 497, 619, 706
CviKI_1	RGCY	9 cut(s)	59, 83, 287, 379, 388, 485, 497, 619, 706
CviQI	GTAC	1 cut(s)	699
DdeI	CTNAG	6 cut(s)	69, 84, 498, 590, 708, 732
DpnI	GATC	2 cut(s)	444, 578
DpnII	GATC	2 cut(s)	442, 576
Ecl136II	GAGCTC	2 cut(s)	388, 619
Eco130I	CCWWGG	1 cut(s)	486
Eco24I	GRGCYC	2 cut(s)	390, 621
Eco32I	GATATC	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	631
Eco53kI	GAGCTC	2 cut(s)	388, 619
Eco57I	CTGAAG	1 cut(s)	495
EcoICRI	GAGCTC	2 cut(s)	388, 619
EcoNI	CCTNNNNNAGG	1 cut(s)	711
EcoRII	CCWGG	2 cut(s)	455, 612
EcoRV	GATATC	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	486
EcoT38I	GRGCYC	2 cut(s)	390, 621
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	2 cut(s)	409, 517
FaiI	YATR	9 cut(s)	194, 256, 301, 336, 407, 515, 587, 636, 668
FaqI	GGGAC	3 cut(s)	272, 595, 661
FatI	CATG	2 cut(s)	405, 513
Fnu4HI	GCNGC	3 cut(s)	549, 552, 693
FokI	GGATG	3 cut(s)	24, 464, 523
FriOI	GRGCYC	2 cut(s)	390, 621
Fsp4HI	GCNGC	3 cut(s)	549, 552, 693
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	3 cut(s)	549, 552, 693
HaeIII	GGCC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	409, 517
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HinfI	GANTC	2 cut(s)	119, 533
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	189
Hpy188I	TCNGA	6 cut(s)	42, 70, 354, 403, 442, 561
Hpy188III	TCNNGA	4 cut(s)	100, 272, 530, 622
Hpy8I	GTNNAC	1 cut(s)	189
HpyAV	CCTTC	2 cut(s)	470, 565
HpyCH4III	ACNGT	2 cut(s)	565, 661
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	3 cut(s)	21, 149, 299
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 320, 385
HpyF3I	CTNAG	6 cut(s)	69, 84, 498, 590, 708, 732
HpySE526I	ACGT	1 cut(s)	543
Hsp92II	CATG	2 cut(s)	409, 517
Kzo9I	GATC	2 cut(s)	442, 576
LmnI	GCTCC	3 cut(s)	393, 616, 681
Lsp1109I	GCAGC	2 cut(s)	535, 704
LweI	GCATC	2 cut(s)	358, 442
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	1 cut(s)	543
MaeIII	GTNAC	3 cut(s)	289, 415, 431
MalI	GATC	2 cut(s)	444, 578
MbiI	CCGCTC	1 cut(s)	277
MboI	GATC	2 cut(s)	442, 576
MboII	GAAGA	2 cut(s)	86, 698
MflI	RGATCY	2 cut(s)	442, 576
MhlI	GDGCHC	3 cut(s)	325, 390, 621
MluCI	AATT	4 cut(s)	16, 111, 139, 178
MlyI	GAGTC	1 cut(s)	527
MmeI	TCCRAC	3 cut(s)	29, 426, 564
MnlI	CCTC	5 cut(s)	36, 64, 79, 302, 454
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	253
MspR9I	CCNGG	2 cut(s)	457, 614
MvaI	CCWGG	2 cut(s)	457, 614
MwoI	GCNNNNNNNGC	3 cut(s)	155, 320, 385
NdeII	GATC	2 cut(s)	442, 576
NlaIII	CATG	2 cut(s)	409, 517
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	550, 553, 694
PleI	GAGTC	1 cut(s)	527
PpsI	GAGTC	1 cut(s)	527
PshAI	GACNNNNGTC	1 cut(s)	662
Psp124BI	GAGCTC	2 cut(s)	390, 621
Psp1406I	AACGTT	1 cut(s)	543
Psp6I	CCWGG	2 cut(s)	455, 612
PspGI	CCWGG	2 cut(s)	455, 612
PspPI	GGNCC	1 cut(s)	631
PsuI	RGATCY	2 cut(s)	442, 576
RsaI	GTAC	1 cut(s)	700
RsaNI	GTAC	1 cut(s)	699
RseI	CAYNNNNRTG	1 cut(s)	253
SacI	GAGCTC	2 cut(s)	390, 621
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	3 cut(s)	549, 552, 693
Sau3AI	GATC	2 cut(s)	442, 576
Sau96I	GGNCC	1 cut(s)	631
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	2 cut(s)	457, 614
SduI	GDGCHC	3 cut(s)	325, 390, 621
SetI	ASST	7 cut(s)	313, 390, 465, 499, 546, 621, 718
SfaNI	GCATC	2 cut(s)	358, 442
SfcI	CTRYAG	1 cut(s)	192
SinI	GGWCC	1 cut(s)	631
SmiMI	CAYNNNNRTG	1 cut(s)	253
SmlI	CTYRAG	2 cut(s)	446, 620
SmoI	CTYRAG	2 cut(s)	446, 620
Sse9I	AATT	4 cut(s)	16, 111, 139, 178
SsiI	CCGC	2 cut(s)	277, 552
SspMI	CTAG	1 cut(s)	159
SstI	GAGCTC	2 cut(s)	390, 621
StyD4I	CCNGG	2 cut(s)	455, 612
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	2 cut(s)	565, 661
TaiI	ACGT	1 cut(s)	546
TaqI	TCGA	1 cut(s)	595
TasI	AATT	4 cut(s)	16, 111, 139, 178
TatI	WGTACW	1 cut(s)	698
TauI	GCSGC	1 cut(s)	554
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	4 cut(s)	132, 268, 475, 666
TseI	GCWGC	2 cut(s)	548, 692
TspDTI	ATGAA	4 cut(s)	53, 422, 502, 717
TspRI	CASTG	4 cut(s)	132, 268, 475, 666
VpaK11BI	GGWCC	1 cut(s)	631
XagI	CCTNNNNNAGG	1 cut(s)	711
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.