Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012423

Physical Location & Seq

Genomic Coordinates Reverse (-)

417154 .. 420584

Gene Structure 3431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G008200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCTTTTTATTCGGAGGAGGAAAAGACTGAGGATTATCTGTTCAAGATTGTTTTAATTGGTGATTCAGCGGTCGGAAAATCTAATTTGCTTGCAAGATTTGCTAGAGATGAGTTCTACCCAAATTCAAAGTCAACTATAGGAGTAGAGTTCCAAACCCAAAAGATGGATATCAATGGTAAAGAAATCAAAGCACAGATCTGGGATACAGCTGGTCAAGAGCGGTTCAGGGCTGTTACATCCGCATATTATAGAGGTGCTGTTGGAGCTCTTTTGGTGTATGATATCAGTAGACGCCAGACATTTGATAGCATTGGCAGATGGCTTAATGAACTCCACACTCACTCCGACATGAATGTAGTTACAATACTTATTGGTAACAAGTCTGATCTCAAGGATGCCAGGGAGGTACCTACTTCTGAAGGCAAGGCGTTGGCAGAAGCACAGGGTTTGTTTTTCATGGAAACATCTGCTCTCGATTCATCCAACGTTGTCGCCGCCTTTCAGATGGTTGTGAAAGAGATCTACAACATACTAAGCCGAAAAGTTATGATATCTCAGGAGCTCAAGAAACAGGACCCTAGCTGGGTGGGGAATGGGAAGACGGTAGTTTTACAGGGAGATGGGAACCAAGAAGACGCAGCTGCTGAGCCTAAAAAAGGTGGGTGCTGCTCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

227

Amino Acids

25.07

Weight (kDa)

5.38

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47520
fragaria_vesca	FvH4_3g00730
malus_domestica	MD05G1360000.v1.1 MD10G1335600.v1.1
prunus_persica	Prupe.4G008200_v2.0.a1 Prupe.4G008200_v2.0.a1
pyrus_communis	pycom05g32500 pycom10g28520
rosa_chinensis	RchiOBHm_Chr5g0000971
rosa_laevigata	RLG00000030910
rosa_multiflora	Rmu_sc0000255.1_g000021
rosa_roxburghii	Rroxscaffold_1G00075300
rosa_rugosa	Rorug04G0388000 Rorug04G0388000
rosa_samantha	Rh5AG007700 Rh5BG009800 Rh5CG008400 Rh5DG008400
rosa_wichuraiana	Rw5G000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	409
AccB1I	GGYRCC	1 cut(s)	409
AccB7I	CCANNNNNTGG	1 cut(s)	166
AccBSI	CCGCTC	1 cut(s)	223
AccI	GTMKAC	1 cut(s)	292
AciI	CCGC	4 cut(s)	71, 223, 243, 498
AclI	AACGTT	1 cut(s)	489
AcsI	RAATTY	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	441
AcyI	GRCGYC	1 cut(s)	295
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	3 cut(s)	166, 586, 659
AgsI	TTSAA	2 cut(s)	46, 129
AjnI	CCWGG	1 cut(s)	401
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
AluBI	AGCT	5 cut(s)	212, 269, 565, 585, 644
AluI	AGCT	5 cut(s)	212, 269, 565, 585, 644
Alw21I	GWGCWC	2 cut(s)	271, 567
AlwNI	CAGNNNCTG	1 cut(s)	647
ApeKI	GCWGC	3 cut(s)	641, 644, 669
ApoI	RAATTY	1 cut(s)	124
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
Asp718I	GGTACC	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	577
AsuHPI	GGTGA	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	409
BanII	GRGCYC	2 cut(s)	271, 567
BbsI	GAAGAC	2 cut(s)	608, 642
Bbv12I	GWGCWC	2 cut(s)	271, 567
BbvI	GCAGC	3 cut(s)	631, 653, 656
BccI	CCATC	4 cut(s)	160, 315, 502, 617
BciT130I	CCWGG	1 cut(s)	403
BciVI	GTATCC	1 cut(s)	199
BfaI	CTAG	2 cut(s)	105, 582
BfmI	CTRYAG	1 cut(s)	138
BfuI	GTATCC	1 cut(s)	199
BglII	AGATCT	2 cut(s)	198, 522
BisI	GCNGC	4 cut(s)	498, 642, 645, 670
BlpI	GCTNAGC	1 cut(s)	648
BlsI	GCNGC	4 cut(s)	499, 643, 646, 671
Bme1390I	CCNGG	1 cut(s)	403
Bme18I	GGWCC	1 cut(s)	577
BmgT120I	GGNCC	1 cut(s)	577
BmiI	GGNNCC	3 cut(s)	411, 579, 629
BmrFI	CCNGG	1 cut(s)	403
BmsI	GCATC	1 cut(s)	388
BpiI	GAAGAC	2 cut(s)	608, 642
Bpu1102I	GCTNAGC	1 cut(s)	648
BpuEI	CTTGAG	2 cut(s)	377, 551
BsaBI	GATNNNNATC	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	402
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 586, 659
Bse8I	GATNNNNATC	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	403
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	3 cut(s)	239, 403, 482
BseJI	GATNNNNATC	1 cut(s)	170
BseLI	CCNNNNNNNGG	3 cut(s)	166, 586, 659
BseMII	CTCAG	3 cut(s)	21, 572, 639
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	3 cut(s)	631, 653, 656
BseYI	CCCAGC	1 cut(s)	585
Bsh1285I	CGRYCG	1 cut(s)	75
BshNI	GGYRCC	1 cut(s)	409
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	2 cut(s)	271, 567
BslI	CCNNNNNNNGG	3 cut(s)	166, 586, 659
Bsp1286I	GDGCHC	2 cut(s)	271, 567
Bsp143I	GATC	3 cut(s)	198, 388, 522
Bsp1720I	GCTNAGC	1 cut(s)	648
BspACI	CCGC	4 cut(s)	71, 223, 243, 498
BspCNI	CTCAG	3 cut(s)	22, 571, 640
BspLI	GGNNCC	3 cut(s)	411, 579, 629
BspT107I	GGYRCC	1 cut(s)	409
BsrBI	CCGCTC	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	3 cut(s)	198, 388, 522
BssNI	GRCGYC	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	403
Bst4CI	ACNGT	1 cut(s)	607
BstACI	GRCGYC	1 cut(s)	295
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	5 cut(s)	30, 536, 558, 648, 678
BstENI	CCTNNNNNAGG	1 cut(s)	657
BstF5I	GGATG	3 cut(s)	239, 403, 482
BstKTI	GATC	3 cut(s)	201, 391, 525
BstMBI	GATC	3 cut(s)	198, 388, 522
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 266
BstNI	CCWGG	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	401
BstSFI	CTRYAG	1 cut(s)	138
BstV1I	GCAGC	3 cut(s)	631, 653, 656
BstV2I	GAAGAC	2 cut(s)	608, 642
BstX2I	RGATCY	2 cut(s)	198, 522
BstYI	RGATCY	2 cut(s)	198, 522
BsuI	GTATCC	1 cut(s)	199
BtsCI	GGATG	3 cut(s)	239, 403, 482
Cac8I	GCNNGC	1 cut(s)	93
CaiI	CAGNNNCTG	1 cut(s)	647
Cfr13I	GGNCC	1 cut(s)	577
CseI	GACGC	2 cut(s)	303, 647
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	2 cut(s)	352, 460
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	5 cut(s)	30, 536, 558, 648, 678
DpnI	GATC	3 cut(s)	200, 390, 524
DpnII	GATC	3 cut(s)	198, 388, 522
Ecl136II	GAGCTC	2 cut(s)	269, 565
Eco24I	GRGCYC	2 cut(s)	271, 567
Eco32I	GATATC	3 cut(s)	172, 286, 555
Eco47I	GGWCC	1 cut(s)	577
Eco53kI	GAGCTC	2 cut(s)	269, 565
Eco57I	CTGAAG	1 cut(s)	441
EcoICRI	GAGCTC	2 cut(s)	269, 565
EcoNI	CCTNNNNNAGG	1 cut(s)	657
EcoO109I	RGGNCCY	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	401
EcoRV	GATATC	3 cut(s)	172, 286, 555
EcoT38I	GRGCYC	2 cut(s)	271, 567
FaeI	CATG	2 cut(s)	355, 463
FaiI	YATR	8 cut(s)	140, 247, 252, 282, 353, 461, 533, 551
FatI	CATG	2 cut(s)	351, 459
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	4 cut(s)	498, 642, 645, 670
FokI	GGATG	3 cut(s)	226, 410, 469
FriOI	GRGCYC	2 cut(s)	271, 567
Fsp4HI	GCNGC	4 cut(s)	498, 642, 645, 670
FspBI	CTAG	2 cut(s)	105, 582
GluI	GCNGC	4 cut(s)	498, 642, 645, 670
GsaI	CCCAGC	1 cut(s)	589
HgaI	GACGC	2 cut(s)	303, 647
Hin1I	GRCGYC	1 cut(s)	295
Hin1II	CATG	2 cut(s)	355, 463
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HinfI	GANTC	2 cut(s)	65, 479
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	2 cut(s)	135, 293
Hpy188I	TCNGA	6 cut(s)	16, 77, 349, 388, 421, 507
Hpy188III	TCNNGA	5 cut(s)	46, 218, 476, 560, 568
Hpy8I	GTNNAC	2 cut(s)	135, 293
HpyAV	CCTTC	1 cut(s)	416
HpyCH4III	ACNGT	1 cut(s)	607
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 266
HpyF3I	CTNAG	5 cut(s)	30, 536, 558, 648, 678
HpySE526I	ACGT	1 cut(s)	489
Hsp92I	GRCGYC	1 cut(s)	295
Hsp92II	CATG	2 cut(s)	355, 463
KpnI	GGTACC	1 cut(s)	413
Kzo9I	GATC	3 cut(s)	198, 388, 522
LmnI	GCTCC	2 cut(s)	266, 562
Lsp1109I	GCAGC	3 cut(s)	631, 653, 656
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	2 cut(s)	105, 582
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	3 cut(s)	235, 361, 377
MalI	GATC	3 cut(s)	200, 390, 524
MbiI	CCGCTC	1 cut(s)	223
MboI	GATC	3 cut(s)	198, 388, 522
MboII	GAAGA	2 cut(s)	613, 647
MflI	RGATCY	2 cut(s)	198, 522
MhlI	GDGCHC	2 cut(s)	271, 567
MluCI	AATT	3 cut(s)	57, 85, 124
MmeI	TCCRAC	4 cut(s)	55, 244, 372, 510
MnlI	CCTC	5 cut(s)	10, 13, 25, 248, 400
MseI	TTAA	2 cut(s)	56, 327
MspA1I	CMGCKG	3 cut(s)	71, 212, 644
MspR9I	CCNGG	1 cut(s)	403
MvaI	CCWGG	1 cut(s)	403
MwoI	GCNNNNNNNGC	2 cut(s)	101, 266
NdeII	GATC	3 cut(s)	198, 388, 522
NlaIII	CATG	2 cut(s)	355, 463
NlaIV	GGNNCC	3 cut(s)	411, 579, 629
PfeI	GAWTC	2 cut(s)	65, 479
PflMI	CCANNNNNTGG	1 cut(s)	166
PkrI	GCNGC	4 cut(s)	499, 643, 646, 671
PpuMI	RGGWCCY	1 cut(s)	577
Psp124BI	GAGCTC	2 cut(s)	271, 567
Psp1406I	AACGTT	1 cut(s)	489
Psp5II	RGGWCCY	1 cut(s)	577
Psp6I	CCWGG	1 cut(s)	401
PspFI	CCCAGC	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	401
PspN4I	GGNNCC	3 cut(s)	411, 579, 629
PspPI	GGNCC	1 cut(s)	577
PspPPI	RGGWCCY	1 cut(s)	577
PstNI	CAGNNNCTG	1 cut(s)	647
PsuI	RGATCY	2 cut(s)	198, 522
PvuII	CAGCTG	2 cut(s)	212, 644
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
SacI	GAGCTC	2 cut(s)	271, 567
SaqAI	TTAA	2 cut(s)	56, 327
SatI	GCNGC	4 cut(s)	498, 642, 645, 670
Sau3AI	GATC	3 cut(s)	198, 388, 522
Sau96I	GGNCC	1 cut(s)	577
ScrFI	CCNGG	1 cut(s)	403
SduI	GDGCHC	2 cut(s)	271, 567
SfaNI	GCATC	1 cut(s)	388
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	577
SmlI	CTYRAG	2 cut(s)	392, 566
SmoI	CTYRAG	2 cut(s)	392, 566
Sse9I	AATT	3 cut(s)	57, 85, 124
SsiI	CCGC	4 cut(s)	71, 223, 243, 498
SspMI	CTAG	2 cut(s)	105, 582
SstI	GAGCTC	2 cut(s)	271, 567
StyD4I	CCNGG	1 cut(s)	401
TaaI	ACNGT	1 cut(s)	607
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	1 cut(s)	477
TasI	AATT	3 cut(s)	57, 85, 124
TauI	GCSGC	1 cut(s)	500
TfiI	GAWTC	2 cut(s)	65, 479
Tru1I	TTAA	2 cut(s)	56, 327
Tru9I	TTAA	2 cut(s)	56, 327
TseI	GCWGC	3 cut(s)	641, 644, 669
TspDTI	ATGAA	4 cut(s)	345, 368, 448, 471
Van91I	CCANNNNNTGG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	577
XagI	CCTNNNNNAGG	1 cut(s)	657
XapI	RAATTY	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	292
XspI	CTAG	2 cut(s)	105, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.