Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012423

Physical Location & Seq

Genomic Coordinates Forward (+)

31894016 .. 31895019

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCTTTTTATTCCGAAGAGGAAAAGACCGAGGATTATCTGTTCAAGATTGTTTTAATTGGTGATTCAGCCGTTGGAAAATCCAATTTGCTTGCAAGATTTGCTAGAGATGAGTTCTACCCTAATTCGAAGTCAACTATAGGAGTAGAGTTCCAAACCCAAAAGGTGGATATCAATGGTAAAGAAGTCAAAGCACAGATCTGGGACACAGCCGGTCAAGAGCGGTTCAGGGCTGTCACCTCTGCATATTACAGAGGTGCCGTTGGTGCTCTTTTGGTATATGATATCAGTAGACACCAGACGTTTGATAGCATTGGCAGATGGCTTAACGAACTCCACACTCATTCTGACATGAACGTAGTTACGATACTTGTTGGCAACAAGTCCGATCTCAAGGATGCCAGGGAGGTACCCACTTCTGAGGGCAAAGCCTTGGCAGAAGCACAGGGTTTGTTTTTTATGGAAACATCTGCTCTTGATTCGTCCAATGTCTCTGCCGCTTTTCAGATGGTTGTGAAAGAGATCTATAACATACTAAGCCGCAAAGTTATGATATCTCAGGAGCTCAAGAAACAGGACCCCAGTTGGGTAGGGAGTGGAAAGACGGTGGTTTTGCAAGACGGGAGCCAAGAAGCAGCAGTTGCAGAGCCTAAAAAAGGTGGGTGCTGTTCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

226

Amino Acids

24.85

Weight (kDa)

5.51

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47520
fragaria_vesca	FvH4_3g00730
malus_domestica	MD05G1360000.v1.1 MD10G1335600.v1.1
prunus_persica	Prupe.4G008200_v2.0.a1 Prupe.4G008200_v2.0.a1
pyrus_communis	pycom05g32500 pycom10g28520
rosa_chinensis	RchiOBHm_Chr5g0000971
rosa_laevigata	RLG00000030910
rosa_multiflora	Rmu_sc0000255.1_g000021
rosa_roxburghii	Rroxscaffold_1G00075300
rosa_rugosa	Rorug04G0388000 Rorug04G0388000
rosa_samantha	Rh5AG007700 Rh5BG009800 Rh5CG008400 Rh5DG008400
rosa_wichuraiana	Rw5G000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	409
AccB1I	GGYRCC	2 cut(s)	257, 409
AccB7I	CCANNNNNTGG	1 cut(s)	166
AccBSI	CCGCTC	1 cut(s)	223
AccI	GTMKAC	1 cut(s)	292
AciI	CCGC	3 cut(s)	223, 498, 541
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	3 cut(s)	166, 586, 656
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	401
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
AluBI	AGCT	1 cut(s)	565
AluI	AGCT	1 cut(s)	565
Alw21I	GWGCWC	2 cut(s)	271, 567
Alw26I	GTCTC	1 cut(s)	496
ApeKI	GCWGC	1 cut(s)	635
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
Asp718I	GGTACC	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	577
AsuHPI	GGTGA	2 cut(s)	74, 229
AsuII	TTCGAA	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	577
BanI	GGYRCC	2 cut(s)	257, 409
BanII	GRGCYC	1 cut(s)	567
Bbv12I	GWGCWC	2 cut(s)	271, 567
BbvI	GCAGC	1 cut(s)	647
BccI	CCATC	2 cut(s)	315, 502
BceAI	ACGGC	2 cut(s)	56, 245
BciT130I	CCWGG	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	496
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	1 cut(s)	138
BglII	AGATCT	2 cut(s)	198, 522
BisI	GCNGC	3 cut(s)	498, 541, 636
BlsI	GCNGC	3 cut(s)	499, 542, 637
Bme1390I	CCNGG	1 cut(s)	403
Bme18I	GGWCC	1 cut(s)	577
BmgT120I	GGNCC	1 cut(s)	577
BmiI	GGNNCC	4 cut(s)	259, 411, 579, 626
BmrFI	CCNGG	1 cut(s)	403
BmrI	ACTGGG	1 cut(s)	576
BmsI	GCATC	1 cut(s)	388
BmuI	ACTGGG	1 cut(s)	576
Bpu14I	TTCGAA	1 cut(s)	128
BpuEI	CTTGAG	2 cut(s)	377, 551
BsaJI	CCNNGG	3 cut(s)	30, 402, 432
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 586, 656
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	403
BseDI	CCNNGG	3 cut(s)	30, 402, 432
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	3 cut(s)	166, 586, 656
BseMII	CTCAG	2 cut(s)	411, 572
BseNI	ACTGG	1 cut(s)	582
BseXI	GCAGC	1 cut(s)	647
BshNI	GGYRCC	2 cut(s)	257, 409
BsiHKAI	GWGCWC	2 cut(s)	271, 567
BsiSI	CCGG	1 cut(s)	213
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	3 cut(s)	166, 586, 656
BsmAI	GTCTC	1 cut(s)	496
BsmFI	GGGAC	1 cut(s)	218
Bsp119I	TTCGAA	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	271, 567
Bsp143I	GATC	3 cut(s)	198, 388, 522
BspACI	CCGC	3 cut(s)	223, 498, 541
BspCNI	CTCAG	2 cut(s)	412, 571
BspLI	GGNNCC	4 cut(s)	259, 411, 579, 626
BspT104I	TTCGAA	1 cut(s)	128
BspT107I	GGYRCC	2 cut(s)	257, 409
BsrBI	CCGCTC	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	582
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	3 cut(s)	30, 402, 432
BssMI	GATC	3 cut(s)	198, 388, 522
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	1 cut(s)	403
Bst4CI	ACNGT	1 cut(s)	607
Bst6I	CTCTTC	1 cut(s)	12
BstAPI	GCANNNNNTGC	2 cut(s)	101, 641
BstBI	TTCGAA	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	4 cut(s)	420, 536, 558, 675
BstENI	CCTNNNNNAGG	1 cut(s)	654
BstF5I	GGATG	1 cut(s)	403
BstKTI	GATC	3 cut(s)	201, 391, 525
BstMAI	GTCTC	1 cut(s)	496
BstMBI	GATC	3 cut(s)	198, 388, 522
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 266, 641
BstNI	CCWGG	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	401
BstSFI	CTRYAG	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	647
BstX2I	RGATCY	2 cut(s)	198, 522
BstYI	RGATCY	2 cut(s)	198, 522
BtsCI	GGATG	1 cut(s)	403
Cac8I	GCNNGC	1 cut(s)	93
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	577
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	1 cut(s)	352
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	4 cut(s)	420, 536, 558, 675
DpnI	GATC	3 cut(s)	200, 390, 524
DpnII	GATC	3 cut(s)	198, 388, 522
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	567
Eco32I	GATATC	3 cut(s)	172, 286, 555
Eco47I	GGWCC	1 cut(s)	577
Eco53kI	GAGCTC	1 cut(s)	565
EcoICRI	GAGCTC	1 cut(s)	565
EcoNI	CCTNNNNNAGG	1 cut(s)	654
EcoO109I	RGGNCCY	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	401
EcoRV	GATATC	3 cut(s)	172, 286, 555
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	1 cut(s)	355
FaiI	YATR	9 cut(s)	140, 247, 280, 282, 353, 461, 528, 533, 551
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	1 cut(s)	351
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	3 cut(s)	498, 541, 636
FokI	GGATG	1 cut(s)	410
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	3 cut(s)	498, 541, 636
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	3 cut(s)	498, 541, 636
HapII	CCGG	1 cut(s)	213
Hin1II	CATG	1 cut(s)	355
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HinfI	GANTC	2 cut(s)	65, 479
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	2 cut(s)	74, 229
Hpy166II	GTNNAC	2 cut(s)	135, 293
Hpy188I	TCNGA	5 cut(s)	16, 349, 388, 421, 507
Hpy188III	TCNNGA	5 cut(s)	46, 218, 476, 560, 568
Hpy8I	GTNNAC	2 cut(s)	135, 293
HpyCH4III	ACNGT	1 cut(s)	607
HpyCH4IV	ACGT	2 cut(s)	302, 357
HpyCH4V	TGCA	4 cut(s)	95, 245, 616, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 266, 641
HpyF3I	CTNAG	4 cut(s)	420, 536, 558, 675
HpySE526I	ACGT	2 cut(s)	302, 357
Hsp92II	CATG	1 cut(s)	355
KpnI	GGTACC	1 cut(s)	413
Kzo9I	GATC	3 cut(s)	198, 388, 522
LmnI	GCTCC	2 cut(s)	562, 624
Lsp1109I	GCAGC	1 cut(s)	647
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	2 cut(s)	302, 357
MaeIII	GTNAC	2 cut(s)	235, 361
MalI	GATC	3 cut(s)	200, 390, 524
MbiI	CCGCTC	1 cut(s)	223
MboI	GATC	3 cut(s)	198, 388, 522
MboII	GAAGA	1 cut(s)	29
MflI	RGATCY	2 cut(s)	198, 522
MhlI	GDGCHC	2 cut(s)	271, 567
MluCI	AATT	3 cut(s)	57, 85, 124
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	6 cut(s)	13, 25, 248, 250, 400, 415
MseI	TTAA	2 cut(s)	56, 327
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	403
MvaI	CCWGG	1 cut(s)	403
MwoI	GCNNNNNNNGC	3 cut(s)	101, 266, 641
NdeII	GATC	3 cut(s)	198, 388, 522
NlaIII	CATG	1 cut(s)	355
NlaIV	GGNNCC	4 cut(s)	259, 411, 579, 626
NmuCI	GTSAC	1 cut(s)	235
NspV	TTCGAA	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	65, 479
PflMI	CCANNNNNTGG	1 cut(s)	166
PkrI	GCNGC	3 cut(s)	499, 542, 637
PpuMI	RGGWCCY	1 cut(s)	577
Psp124BI	GAGCTC	1 cut(s)	567
Psp5II	RGGWCCY	1 cut(s)	577
Psp6I	CCWGG	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	401
PspN4I	GGNNCC	4 cut(s)	259, 411, 579, 626
PspPI	GGNCC	1 cut(s)	577
PspPPI	RGGWCCY	1 cut(s)	577
PsuI	RGATCY	2 cut(s)	198, 522
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
SacI	GAGCTC	1 cut(s)	567
SaqAI	TTAA	2 cut(s)	56, 327
SatI	GCNGC	3 cut(s)	498, 541, 636
Sau3AI	GATC	3 cut(s)	198, 388, 522
Sau96I	GGNCC	1 cut(s)	577
ScrFI	CCNGG	1 cut(s)	403
SduI	GDGCHC	2 cut(s)	271, 567
SetI	ASST	8 cut(s)	168, 242, 259, 305, 360, 411, 567, 661
SfaNI	GCATC	1 cut(s)	388
SfcI	CTRYAG	1 cut(s)	138
SfuI	TTCGAA	1 cut(s)	128
SinI	GGWCC	1 cut(s)	577
SmlI	CTYRAG	2 cut(s)	392, 566
SmoI	CTYRAG	2 cut(s)	392, 566
Sse9I	AATT	3 cut(s)	57, 85, 124
SsiI	CCGC	3 cut(s)	223, 498, 541
SspMI	CTAG	1 cut(s)	105
SstI	GAGCTC	1 cut(s)	567
StyD4I	CCNGG	1 cut(s)	401
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	607
TaiI	ACGT	2 cut(s)	305, 360
TaqI	TCGA	1 cut(s)	128
TaqII	GACCGA	1 cut(s)	44
TasI	AATT	3 cut(s)	57, 85, 124
TauI	GCSGC	2 cut(s)	500, 543
TfiI	GAWTC	2 cut(s)	65, 479
Tru1I	TTAA	2 cut(s)	56, 327
Tru9I	TTAA	2 cut(s)	56, 327
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	635
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	368, 660
Van91I	CCANNNNNTGG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	577
XagI	CCTNNNNNAGG	1 cut(s)	654
XmiI	GTMKAC	1 cut(s)	292
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.