FvH4_3g04970

Nucleoporin protein Ndc1-Nup

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014392
Physical Location & Seq
Reverse (-)
2855309 .. 2859624
4316 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04970.t1

Sequence Viewer

Length: 1614 bp
ATGCCTCCTCCTCCTCCTCCGGCGCCGCCGCACGCGGTGGTCCGCAACCGCTTCCTAGGGTTCCTCATCTGGCAATCCATCCCCTCCACCCTCATTTTCCTCCTCTTCAAAACCCTCTCCCCCTCCTCCTCCTCAAAACCCCTTTTCCCATTCGCCCCATGGTTCTTCGCCGTAATTACCTTCCTGTCCTTCCACCTCTCCCAGCTCCTCTTCTCCGCCGCCCTCTCCCTCGTCTCCTCCGCCCACCCCCACCCTCTCGTCTCGCCTCTCAACCTCGCCCTCGAGCTCCTCCGCTTCCTCTTCGTTCCCGCCGCCTCCGGGTCGCCGCCGCCGGGTTCTCGGGCCCGGGTCCGGGTCGCCGCCGGTTTCGCGGCGTTTCTGGCCGCGGCGGCGGGTTCCGGGTTTCTCGCGGCGGTCTCGGTTTGCGGGGAAGTCGGTGGTTGGGTTAAGGGGATAGGTAGAGTAGGGTTTAGGGGTTTTGTGATGGGCTTGCTTTATGGGTTGTACTATGTGTATACCCGGAAGTGGGTTCTGGAGTTCCCCATTATTCAGCGTCCGCCCTTTTTTAGCTTCAAGATGGGGATCCCCACGGCTATCACACGATCCTTAAAGCTGTCCTTTGTGGCATACATAGTCTCAGCTATTCTGGTGGTGTTCCTTCCCCATGAGTTTCACAACAAAGTTACAATTGGAAGGTGGATTGCAGAGCAGATTAGCTTCTACATTGGGAGTTTCTTGGTGTTTCTCTGCTGGGAACTAAGTCACCATTTACATCAGGTGCTCAATACCAAGAGATGCATATTTGCACCGCCTAAAGGATCAGCTGCAGCAGAAACAAATCCAACTGAGCATCTCCTTGCAGCTCTGGAGGAGAGTGCTCCTAATTCTCTTCCTCAATATCTTGCATATCTTGATCTCTGCATGATCTGTGAGAATAATGTTGATTCTTGGCGACGAGCTGCCTTCTTCGAAGAAAGTGGTGAAACTTACAAAAGGGTTGTATCTGTATGCGTGCGACCTCTGGAGCAGCTTGCATCAAAATTGGGTGAAGGCTTGGAAAGTTCTGTTAATGGAAAATCCCAAATATCCAATCAGTTACAGTCACCAACTGACCAGCGACTGGATTCCAAATACTCTGAACCATTCGACAATTTCCAGCTATATGCATGGTGTGCCTGGTCAGCTGCTTCACTGACTGCACGCTCAAACACGGACGACAGATTTGGGGTTGCCCAGAGATCGGGCAGTAATGCTGCTGTGATCTCAACACTGATCTCTTGCCTTCTTGCTGTTGAAACATACATGGGAAAGAAGACCACTGTACCGGCGCAGTTTATGGGACCAGCTAGTATCAAATGGGCAACCTCGAGTGTGGGAAATGTTGGCATGGCTAAGAAGAGAGTTGGCCCTATCCATCCCAAAGCATATGCCCTTGCTGATGCTCTCAGAAACTCAATCTATCATATTGTGTCCGCATGCCATGATCAGATGGTGAGCAGTGCCAAAACGGGCGTCCTTGAGAAGTATTGGGTCATCAAAGGCGAGCCTCCTTTTGGGTCACACGAGCTTCTGGTGCAGAAACTGCGTCTTTTCCTAGACTTTCGAGCTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Ndc1_Nup

Protein Analysis

538

Amino Acids

58.95

Weight (kDa)

9.45

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ndc1_Nup PF09531 159 - 374 2.7e-15 Nucleoporin protein Ndc1-Nup
Ndc1_Nup PF09531 371 - 492 9.7e-08 Nucleoporin protein Ndc1-Nup
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73240
fragaria_vesca FvH4_3g04970
malus_domestica MD05G1278400.v1.1 MD10G1257000.v1.1
prunus_persica Prupe.4G086400_v2.0.a1
pyrus_communis pycom05g25900 pycom10g21270
rosa_chinensis RchiOBHm_Chr5g0015011
rosa_laevigata RLG00000032160
rosa_multiflora Rmu_sc0004889.1_g000023
rosa_roxburghii Rroxscaffold_1G00061530
rosa_rugosa Rorug05G0022800
rosa_samantha Rh5AG118000 Rh5BG115200 Rh5CG126500 Rh5DG114700
rosa_wichuraiana Rw5G010170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AccB7I CCANNNNNTGG 1 cut(s) 1120
AccI GTMKAC 1 cut(s) 515
AccII CGCG 4 cut(s) 35, 371, 386, 410
AclWI GGATC 4 cut(s) 577, 590, 597, 826
AcoI YGGCCR 1 cut(s) 381
AcyI GRCGYC 2 cut(s) 23, 1512
AdeI CACNNNGTG 1 cut(s) 37
AfaI GTAC 2 cut(s) 506, 1323
AgsI TTSAA 3 cut(s) 109, 574, 1295
AjnI CCWGG 1 cut(s) 1175
Alw21I GWGCWC 3 cut(s) 288, 783, 880
Alw26I GTCTC 4 cut(s) 238, 265, 421, 640
AlwI GGATC 4 cut(s) 577, 590, 597, 826
AlwNI CAGNNNCTG 2 cut(s) 1120, 1582
Ama87I CYCGRG 4 cut(s) 281, 339, 345, 1366
AoxI GGCC 3 cut(s) 342, 381, 1405
ApaI GGGCCC 1 cut(s) 346
ApeKI GCWGC 7 cut(s) 824, 827, 860, 959, 1027, 1184, 1253
ArsI GACNNNNNNTTYG 4 cut(s) 1205, 1237, 1497, 1529
AspA2I CCTAGG 1 cut(s) 55
AspLEI GCGC 2 cut(s) 25, 1330
AspS9I GGNCC 6 cut(s) 40, 342, 343, 349, 1340, 1406
AsuC2I CCSGG 7 cut(s) 319, 333, 346, 347, 353, 400, 520
AsuHPI GGTGA 5 cut(s) 755, 992, 1058, 1095, 1504
AsuII TTCGAA 1 cut(s) 969
AsuNHI GCTAGC 1 cut(s) 1607
AvaI CYCGRG 4 cut(s) 281, 339, 345, 1366
AvaII GGWCC 3 cut(s) 40, 349, 1340
AvrII CCTAGG 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 346
BaeI ACNNNNGTAYC 2 cut(s) 1305, 1338
BamHI GGATCC 1 cut(s) 582
BanI GGYRCC 1 cut(s) 22
BanII GRGCYC 2 cut(s) 288, 346
BauI CACGAG 1 cut(s) 1562
BbsI GAAGAC 1 cut(s) 1319
Bbv12I GWGCWC 3 cut(s) 288, 783, 880
BbvI GCAGC 7 cut(s) 811, 839, 872, 946, 1039, 1171, 1240
BccI CCATC 5 cut(s) 86, 478, 571, 1422, 1483
BceAI ACGGC 2 cut(s) 155, 606
BciT130I CCWGG 1 cut(s) 1177
BclI TGATCA 1 cut(s) 1483
BcnI CCSGG 7 cut(s) 319, 333, 346, 347, 353, 400, 520
BcoDI GTCTC 4 cut(s) 238, 265, 421, 640
BfaI CTAG 4 cut(s) 56, 1347, 1595, 1608
BfmI CTRYAG 1 cut(s) 825
BfoI RGCGCY 1 cut(s) 26
BglI GCCNNNNNGGC 1 cut(s) 389
BlnI CCTAGG 1 cut(s) 55
Bme1390I CCNGG 8 cut(s) 319, 333, 346, 347, 353, 400, 520, 1177
Bme18I GGWCC 3 cut(s) 40, 349, 1340
BmeT110I CYCGRG 4 cut(s) 281, 339, 345, 1366
BmgT120I GGNCC 6 cut(s) 40, 342, 343, 349, 1340, 1406
BmiI GGNNCC 7 cut(s) 24, 62, 344, 350, 397, 584, 1341
BmrFI CCNGG 8 cut(s) 319, 333, 346, 347, 353, 400, 520, 1177
BmsI GCATC 4 cut(s) 785, 859, 1043, 1429
BmtI GCTAGC 1 cut(s) 1611
BpiI GAAGAC 1 cut(s) 1319
BpmI CTGGAG 3 cut(s) 554, 887, 1043
Bpu14I TTCGAA 1 cut(s) 969
BpuEI CTTGAG 1 cut(s) 1538
BpuMI CCSGG 7 cut(s) 319, 333, 346, 347, 353, 400, 520
BsaBI GATNNNNATC 1 cut(s) 581
BsaHI GRCGYC 2 cut(s) 23, 1512
BsaI GGTCTC 1 cut(s) 421
BsaJI CCNNGG 5 cut(s) 55, 158, 345, 384, 588
Bse118I RCCGGY 2 cut(s) 362, 1324
Bse1I ACTGG 1 cut(s) 1125
Bse8I GATNNNNATC 1 cut(s) 581
BseBI CCWGG 1 cut(s) 1177
BseDI CCNNGG 5 cut(s) 55, 158, 345, 384, 588
BseGI GGATG 2 cut(s) 78, 1414
BseJI GATNNNNATC 1 cut(s) 581
BseMII CTCAG 3 cut(s) 651, 837, 1459
BseNI ACTGG 1 cut(s) 1125
BseRI GAGGAG 9 cut(s) 6, 92, 115, 118, 121, 197, 226, 278, 884
BseSI GKGCMC 1 cut(s) 346
BseXI GCAGC 7 cut(s) 811, 839, 872, 946, 1039, 1171, 1240
BseYI CCCAGC 2 cut(s) 201, 750
BsgI GTGCAG 2 cut(s) 1182, 1595
Bsh1236I CGCG 4 cut(s) 35, 371, 386, 410
BshFI GGCC 3 cut(s) 344, 383, 1407
BshNI GGYRCC 1 cut(s) 22
BsiHKAI GWGCWC 3 cut(s) 288, 783, 880
BsiHKCI CYCGRG 4 cut(s) 281, 339, 345, 1366
BsiSI CCGG 9 cut(s) 20, 318, 332, 346, 352, 363, 399, 520, 1325
BslFI GGGAC 1 cut(s) 1353
BsmAI GTCTC 4 cut(s) 238, 265, 421, 640
BsmBI CGTCTC 2 cut(s) 238, 265
BsmFI GGGAC 1 cut(s) 1353
BsnI GGCC 3 cut(s) 344, 383, 1407
Bso31I GGTCTC 1 cut(s) 421
BsoBI CYCGRG 4 cut(s) 281, 339, 345, 1366
Bsp119I TTCGAA 1 cut(s) 969
Bsp120I GGGCCC 1 cut(s) 342
Bsp1286I GDGCHC 4 cut(s) 288, 346, 783, 880
Bsp143I GATC 9 cut(s) 582, 602, 818, 913, 924, 1238, 1260, 1272, 1483
Bsp19I CCATGG 1 cut(s) 158
BspANI GGCC 3 cut(s) 344, 383, 1407
BspCNI CTCAG 3 cut(s) 650, 838, 1458
BspFNI CGCG 4 cut(s) 35, 371, 386, 410
BspLI GGNNCC 7 cut(s) 24, 62, 344, 350, 397, 584, 1341
BspMAI CTGCAG 1 cut(s) 829
BspOI GCTAGC 1 cut(s) 1611
BspPI GGATC 4 cut(s) 577, 590, 597, 826
BspT104I TTCGAA 1 cut(s) 969
BspT107I GGYRCC 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 421
BsrFI RCCGGY 2 cut(s) 362, 1324
BsrI ACTGG 1 cut(s) 1125
BssAI RCCGGY 2 cut(s) 362, 1324
BssECI CCNNGG 5 cut(s) 55, 158, 345, 384, 588
BssMI GATC 9 cut(s) 582, 602, 818, 913, 924, 1238, 1260, 1272, 1483
BssNAI GTATAC 1 cut(s) 516
BssNI GRCGYC 2 cut(s) 23, 1512
BssSI CACGAG 1 cut(s) 1562
BssT1I CCWWGG 2 cut(s) 55, 158
Bst1107I GTATAC 1 cut(s) 516
Bst2BI CACGAG 1 cut(s) 1562
Bst2UI CCWGG 1 cut(s) 1177
Bst4CI ACNGT 2 cut(s) 1101, 1321
Bst6I CTCTTC 5 cut(s) 110, 215, 305, 894, 1391
BstACI GRCGYC 2 cut(s) 23, 1512
BstAPI GCANNNNNTGC 2 cut(s) 1172, 1582
BstBI TTCGAA 1 cut(s) 969
BstC8I GCNNGC 8 cut(s) 33, 491, 1013, 1032, 1201, 1477, 1544, 1609
BstDEI CTNAG 5 cut(s) 637, 758, 846, 1392, 1445
BstDSI CCRYGG 3 cut(s) 158, 384, 588
BstF5I GGATG 2 cut(s) 78, 1414
BstFNI CGCG 4 cut(s) 35, 371, 386, 410
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 2 cut(s) 25, 1330
BstKTI GATC 9 cut(s) 585, 605, 821, 916, 927, 1241, 1263, 1275, 1486
BstMAI GTCTC 4 cut(s) 238, 265, 421, 640
BstMBI GATC 9 cut(s) 582, 602, 818, 913, 924, 1238, 1260, 1272, 1483
BstMWI GCNNNNNNNGC 7 cut(s) 368, 380, 389, 1172, 1181, 1573, 1582
BstNI CCWGG 1 cut(s) 1177
BstNSI RCATGY 1 cut(s) 1479
BstSCI CCNGG 8 cut(s) 317, 331, 344, 345, 351, 398, 518, 1175
BstSFI CTRYAG 1 cut(s) 825
BstSLI GKGCMC 1 cut(s) 346
BstUI CGCG 4 cut(s) 35, 371, 386, 410
BstV1I GCAGC 7 cut(s) 811, 839, 872, 946, 1039, 1171, 1240
BstV2I GAAGAC 1 cut(s) 1319
BstX2I RGATCY 1 cut(s) 582
BstYI RGATCY 1 cut(s) 582
BstZ17I GTATAC 1 cut(s) 516
BsuRI GGCC 3 cut(s) 344, 383, 1407
BtgI CCRYGG 3 cut(s) 158, 384, 588
BtsCI GGATG 2 cut(s) 78, 1414
BtsI GCAGTG 1 cut(s) 1504
BtsIMutI CAGTG 4 cut(s) 1190, 1268, 1317, 1504
Cac8I GCNNGC 8 cut(s) 33, 491, 1013, 1032, 1201, 1477, 1544, 1609
CaiI CAGNNNCTG 2 cut(s) 1120, 1582
CfoI GCGC 2 cut(s) 25, 1330
Cfr10I RCCGGY 2 cut(s) 362, 1324
Cfr13I GGNCC 6 cut(s) 40, 342, 343, 349, 1340, 1406
Cfr42I CCGCGG 1 cut(s) 387
Cfr9I CCCGGG 1 cut(s) 345
CseI GACGC 3 cut(s) 542, 1501, 1574
Csp6I GTAC 2 cut(s) 505, 1322
CviAII CATG 8 cut(s) 159, 665, 922, 1167, 1303, 1387, 1476, 1481
CviQI GTAC 2 cut(s) 505, 1322
DdeI CTNAG 5 cut(s) 637, 758, 846, 1392, 1445
DinI GGCGCC 1 cut(s) 24
DpnI GATC 9 cut(s) 584, 604, 820, 915, 926, 1240, 1262, 1274, 1485
DpnII GATC 9 cut(s) 582, 602, 818, 913, 924, 1238, 1260, 1272, 1483
DraIII CACNNNGTG 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 5 cut(s) 110, 215, 305, 894, 1391
EarI CTCTTC 5 cut(s) 110, 215, 305, 894, 1391
EciI GGCGGA 3 cut(s) 205, 229, 546
Ecl136II GAGCTC 1 cut(s) 286
Eco130I CCWWGG 2 cut(s) 55, 158
Eco24I GRGCYC 2 cut(s) 288, 346
Eco31I GGTCTC 1 cut(s) 421
Eco47I GGWCC 3 cut(s) 40, 349, 1340
Eco53kI GAGCTC 1 cut(s) 286
Eco88I CYCGRG 4 cut(s) 281, 339, 345, 1366
EcoICRI GAGCTC 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 1175
EcoT14I CCWWGG 2 cut(s) 55, 158
EcoT22I ATGCAT 2 cut(s) 800, 1168
EcoT38I GRGCYC 2 cut(s) 288, 346
EgeI GGCGCC 1 cut(s) 24
EheI GGCGCC 1 cut(s) 24
ErhI CCWWGG 2 cut(s) 55, 158
Esp3I CGTCTC 2 cut(s) 238, 265
FaeI CATG 8 cut(s) 162, 668, 925, 1170, 1306, 1390, 1479, 1484
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FaqI GGGAC 1 cut(s) 1353
FatI CATG 8 cut(s) 158, 664, 921, 1166, 1302, 1386, 1475, 1480
FauI CCCGC 3 cut(s) 316, 385, 419
FauNDI CATATG 1 cut(s) 1426
FbaI TGATCA 1 cut(s) 1483
FblI GTMKAC 1 cut(s) 515
FokI GGATG 2 cut(s) 65, 1401
FriOI GRGCYC 2 cut(s) 288, 346
FspBI CTAG 4 cut(s) 56, 1347, 1595, 1608
GlaI GCGC 2 cut(s) 24, 1329
GsaI CCCAGC 2 cut(s) 205, 754
GsuI CTGGAG 3 cut(s) 554, 887, 1043
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 3 cut(s) 344, 383, 1407
HapII CCGG 9 cut(s) 20, 318, 332, 346, 352, 363, 399, 520, 1325
HgaI GACGC 3 cut(s) 542, 1501, 1574
HhaI GCGC 2 cut(s) 25, 1330
Hin1I GRCGYC 2 cut(s) 23, 1512
Hin1II CATG 8 cut(s) 162, 668, 925, 1170, 1306, 1390, 1479, 1484
Hin6I GCGC 2 cut(s) 23, 1328
HinP1I GCGC 2 cut(s) 23, 1328
HinfI GANTC 2 cut(s) 944, 1124
HpaII CCGG 9 cut(s) 20, 318, 332, 346, 352, 363, 399, 520, 1325
HphI GGTGA 5 cut(s) 755, 992, 1058, 1095, 1504
Hpy166II GTNNAC 1 cut(s) 516
Hpy188I TCNGA 3 cut(s) 1138, 1448, 1488
Hpy188III TCNNGA 5 cut(s) 533, 574, 866, 911, 1022
Hpy8I GTNNAC 1 cut(s) 516
Hpy99I CGWCG 1 cut(s) 957
HpyAV CCTTC 7 cut(s) 190, 199, 668, 687, 973, 1043, 1292
HpyCH4III ACNGT 2 cut(s) 1101, 1321
HpyF10VI GCNNNNNNNGC 7 cut(s) 368, 380, 389, 1172, 1181, 1573, 1582
HpyF3I CTNAG 5 cut(s) 637, 758, 846, 1392, 1445
Hsp92I GRCGYC 2 cut(s) 23, 1512
Hsp92II CATG 8 cut(s) 162, 668, 925, 1170, 1306, 1390, 1479, 1484
HspAI GCGC 2 cut(s) 23, 1328
KasI GGCGCC 1 cut(s) 22
Ksp22I TGATCA 1 cut(s) 1483
KspI CCGCGG 1 cut(s) 387
Kzo9I GATC 9 cut(s) 582, 602, 818, 913, 924, 1238, 1260, 1272, 1483
LmnI GCTCC 4 cut(s) 210, 291, 883, 1024
Lsp1109I GCAGC 7 cut(s) 811, 839, 872, 946, 1039, 1171, 1240
LweI GCATC 4 cut(s) 785, 859, 1043, 1429
MaeI CTAG 4 cut(s) 56, 1347, 1595, 1608
MaeIII GTNAC 5 cut(s) 682, 761, 1095, 1101, 1557
MalI GATC 9 cut(s) 584, 604, 820, 915, 926, 1240, 1262, 1274, 1485
MboI GATC 9 cut(s) 582, 602, 818, 913, 924, 1238, 1260, 1272, 1483
MboII GAAGA 9 cut(s) 97, 157, 202, 292, 881, 958, 983, 1324, 1408
MfeI CAATTG 1 cut(s) 687
MflI RGATCY 1 cut(s) 582
MhlI GDGCHC 4 cut(s) 288, 346, 783, 880
MluCI AATT 5 cut(s) 174, 687, 883, 1040, 1150
Mly113I GGCGCC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 866
Mph1103I ATGCAT 2 cut(s) 800, 1168
MseI TTAA 3 cut(s) 447, 608, 1068
MspA1I CMGCKG 3 cut(s) 386, 824, 1184
MspI CCGG 9 cut(s) 20, 318, 332, 346, 352, 363, 399, 520, 1325
MspR9I CCNGG 8 cut(s) 319, 333, 346, 347, 353, 400, 520, 1177
MunI CAATTG 1 cut(s) 687
MvaI CCWGG 1 cut(s) 1177
MvnI CGCG 4 cut(s) 35, 371, 386, 410
MwoI GCNNNNNNNGC 7 cut(s) 368, 380, 389, 1172, 1181, 1573, 1582
NarI GGCGCC 1 cut(s) 23
NciI CCSGG 7 cut(s) 319, 333, 346, 347, 353, 400, 520
NcoI CCATGG 1 cut(s) 158
NdeI CATATG 1 cut(s) 1426
NdeII GATC 9 cut(s) 582, 602, 818, 913, 924, 1238, 1260, 1272, 1483
NheI GCTAGC 1 cut(s) 1607
NlaIII CATG 8 cut(s) 162, 668, 925, 1170, 1306, 1390, 1479, 1484
NlaIV GGNNCC 7 cut(s) 24, 62, 344, 350, 397, 584, 1341
NmuCI GTSAC 3 cut(s) 761, 1101, 1557
NsiI ATGCAT 2 cut(s) 800, 1168
NspI RCATGY 1 cut(s) 1479
NspV TTCGAA 1 cut(s) 969
PaeI GCATGC 1 cut(s) 1479
PaeR7I CTCGAG 2 cut(s) 281, 1366
PfeI GAWTC 2 cut(s) 944, 1124
PflMI CCANNNNNTGG 1 cut(s) 1120
PluTI GGCGCC 1 cut(s) 26
Psp124BI GAGCTC 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 1175
PspFI CCCAGC 2 cut(s) 201, 750
PspGI CCWGG 1 cut(s) 1175
PspN4I GGNNCC 7 cut(s) 24, 62, 344, 350, 397, 584, 1341
PspOMI GGGCCC 1 cut(s) 342
PspPI GGNCC 6 cut(s) 40, 342, 343, 349, 1340, 1406
PspXI VCTCGAGB 2 cut(s) 281, 1366
PstI CTGCAG 1 cut(s) 829
PstNI CAGNNNCTG 2 cut(s) 1120, 1582
PsuI RGATCY 1 cut(s) 582
PvuII CAGCTG 2 cut(s) 824, 1184
RsaI GTAC 2 cut(s) 506, 1323
RsaNI GTAC 2 cut(s) 505, 1322
SacI GAGCTC 1 cut(s) 288
SacII CCGCGG 1 cut(s) 387
SaqAI TTAA 3 cut(s) 447, 608, 1068
Sau3AI GATC 9 cut(s) 582, 602, 818, 913, 924, 1238, 1260, 1272, 1483
Sau96I GGNCC 6 cut(s) 40, 342, 343, 349, 1340, 1406
ScrFI CCNGG 8 cut(s) 319, 333, 346, 347, 353, 400, 520, 1177
SduI GDGCHC 4 cut(s) 288, 346, 783, 880
SfaNI GCATC 4 cut(s) 785, 859, 1043, 1429
SfcI CTRYAG 1 cut(s) 825
SfoI GGCGCC 1 cut(s) 24
Sfr274I CTCGAG 2 cut(s) 281, 1366
Sfr303I CCGCGG 1 cut(s) 387
SfuI TTCGAA 1 cut(s) 969
SgrBI CCGCGG 1 cut(s) 387
SinI GGWCC 3 cut(s) 40, 349, 1340
SlaI CTCGAG 2 cut(s) 281, 1366
SmaI CCCGGG 1 cut(s) 347
SmlI CTYRAG 3 cut(s) 281, 1366, 1517
SmoI CTYRAG 3 cut(s) 281, 1366, 1517
SphI GCATGC 1 cut(s) 1479
Sse9I AATT 5 cut(s) 174, 687, 883, 1040, 1150
SspDI GGCGCC 1 cut(s) 22
SspMI CTAG 4 cut(s) 56, 1347, 1595, 1608
SstI GAGCTC 1 cut(s) 288
StyD4I CCNGG 8 cut(s) 317, 331, 344, 345, 351, 398, 518, 1175
StyI CCWWGG 2 cut(s) 55, 158
TaaI ACNGT 2 cut(s) 1101, 1321
TaqI TCGA 5 cut(s) 282, 969, 1146, 1367, 1603
TasI AATT 5 cut(s) 174, 687, 883, 1040, 1150
TatI WGTACW 1 cut(s) 504
TfiI GAWTC 2 cut(s) 944, 1124
Tru1I TTAA 3 cut(s) 447, 608, 1068
Tru9I TTAA 3 cut(s) 447, 608, 1068
TscAI CASTG 4 cut(s) 1197, 1275, 1324, 1504
TseFI GTSAC 3 cut(s) 761, 1101, 1557
TseI GCWGC 7 cut(s) 824, 827, 860, 959, 1027, 1184, 1253
Tsp45I GTSAC 3 cut(s) 761, 1101, 1557
TspGWI ACGGA 1 cut(s) 1226
TspMI CCCGGG 1 cut(s) 345
TspRI CASTG 4 cut(s) 1197, 1275, 1324, 1504
Van91I CCANNNNNTGG 1 cut(s) 1120
VpaK11BI GGWCC 3 cut(s) 40, 349, 1340
XceI RCATGY 1 cut(s) 1479
XcmI CCANNNNNNNNNTGG 1 cut(s) 156
XhoI CTCGAG 2 cut(s) 281, 1366
XmaI CCCGGG 1 cut(s) 345
XmaJI CCTAGG 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 515
XspI CTAG 4 cut(s) 56, 1347, 1595, 1608
Zsp2I ATGCAT 2 cut(s) 800, 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.