Nucleoporin protein Ndc1-Nup
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G73240 |
| fragaria_vesca | FvH4_3g04970 |
| malus_domestica | MD05G1278400.v1.1 MD10G1257000.v1.1 |
| prunus_persica | Prupe.4G086400_v2.0.a1 |
| pyrus_communis | pycom05g25900 pycom10g21270 |
| rosa_chinensis | RchiOBHm_Chr5g0015011 |
| rosa_laevigata | RLG00000032160 |
| rosa_multiflora | Rmu_sc0004889.1_g000023 |
| rosa_roxburghii | Rroxscaffold_1G00061530 |
| rosa_rugosa | Rorug05G0022800 |
| rosa_samantha | Rh5AG118000 Rh5BG115200 Rh5CG126500 Rh5DG114700 |
| rosa_wichuraiana | Rw5G010170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 495 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 26 |
| Acc36I | ACCTGC | 1 cut(s) | 495 |
| AccBSI | CCGCTC | 1 cut(s) | 98 |
| AccII | CGCG | 1 cut(s) | 23 |
| AclWI | GGATC | 2 cut(s) | 579, 811 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 334, 352, 800, 1055, 1225, 1538 |
| AgsI | TTSAA | 4 cut(s) | 556, 1113, 1280, 1523 |
| AjnI | CCWGG | 1 cut(s) | 1160 |
| Alw21I | GWGCWC | 3 cut(s) | 267, 417, 863 |
| Alw26I | GTCTC | 2 cut(s) | 569, 622 |
| AlwI | GGATC | 2 cut(s) | 579, 811 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1084 |
| Ama87I | CYCGRG | 3 cut(s) | 260, 321, 1351 |
| AoxI | GGCC | 3 cut(s) | 1001, 1325, 1390 |
| ApeKI | GCWGC | 8 cut(s) | 365, 809, 812, 845, 944, 1012, 1169, 1238 |
| AspLEI | GCGC | 3 cut(s) | 13, 504, 793 |
| AspS9I | GGNCC | 4 cut(s) | 28, 325, 1325, 1391 |
| AsuC2I | CCSGG | 5 cut(s) | 288, 307, 315, 329, 382 |
| AsuHPI | GGTGA | 6 cut(s) | 331, 647, 740, 977, 1043, 1489 |
| AsuII | TTCGAA | 1 cut(s) | 954 |
| AsuNHI | GCTAGC | 1 cut(s) | 1592 |
| AvaI | CYCGRG | 3 cut(s) | 260, 321, 1351 |
| AvaII | GGWCC | 2 cut(s) | 28, 325 |
| BanII | GRGCYC | 2 cut(s) | 267, 417 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 670, 702 |
| BauI | CACGAG | 1 cut(s) | 1547 |
| BbsI | GAAGAC | 1 cut(s) | 1304 |
| Bbv12I | GWGCWC | 3 cut(s) | 267, 417, 863 |
| BbvI | GCAGC | 8 cut(s) | 352, 796, 824, 857, 931, 1024, 1156, 1225 |
| BccI | CCATC | 7 cut(s) | 74, 460, 553, 654, 1028, 1407, 1468 |
| BceAI | ACGGC | 2 cut(s) | 131, 588 |
| BciT130I | CCWGG | 1 cut(s) | 1162 |
| BclI | TGATCA | 1 cut(s) | 1468 |
| BcnI | CCSGG | 5 cut(s) | 288, 307, 315, 329, 382 |
| BcoDI | GTCTC | 2 cut(s) | 569, 622 |
| BfaI | CTAG | 6 cut(s) | 614, 1106, 1332, 1377, 1580, 1593 |
| BfmI | CTRYAG | 1 cut(s) | 810 |
| BfoI | RGCGCY | 1 cut(s) | 14 |
| BfuAI | ACCTGC | 1 cut(s) | 495 |
| Bme1390I | CCNGG | 6 cut(s) | 288, 307, 315, 329, 382, 1162 |
| Bme18I | GGWCC | 2 cut(s) | 28, 325 |
| BmeT110I | CYCGRG | 3 cut(s) | 260, 321, 1351 |
| BmgT120I | GGNCC | 4 cut(s) | 28, 325, 1325, 1391 |
| BmiI | GGNNCC | 4 cut(s) | 50, 295, 326, 1326 |
| BmrFI | CCNGG | 6 cut(s) | 288, 307, 315, 329, 382, 1162 |
| BmsI | GCATC | 3 cut(s) | 770, 844, 1028 |
| BmtI | GCTAGC | 1 cut(s) | 1596 |
| BpiI | GAAGAC | 1 cut(s) | 1304 |
| BpmI | CTGGAG | 1 cut(s) | 1028 |
| Bpu14I | TTCGAA | 1 cut(s) | 954 |
| BpuEI | CTTGAG | 2 cut(s) | 233, 1523 |
| BpuMI | CCSGG | 5 cut(s) | 288, 307, 315, 329, 382 |
| BsaI | GGTCTC | 1 cut(s) | 569 |
| BsaJI | CCNNGG | 2 cut(s) | 134, 570 |
| BsaWI | WCCGGW | 1 cut(s) | 599 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 334, 352, 800, 1055, 1225, 1538 |
| BseBI | CCWGG | 1 cut(s) | 1162 |
| BseDI | CCNNGG | 2 cut(s) | 134, 570 |
| BseGI | GGATG | 2 cut(s) | 66, 1399 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 334, 352, 800, 1055, 1225, 1538 |
| BseMII | CTCAG | 5 cut(s) | 191, 633, 734, 822, 893 |
| BseRI | GAGGAG | 4 cut(s) | 80, 173, 202, 869 |
| BseXI | GCAGC | 8 cut(s) | 352, 796, 824, 857, 931, 1024, 1156, 1225 |
| BseYI | CCCAGC | 2 cut(s) | 735, 1027 |
| BsgI | GTGCAG | 3 cut(s) | 1167, 1296, 1580 |
| Bsh1236I | CGCG | 1 cut(s) | 23 |
| BshFI | GGCC | 3 cut(s) | 1003, 1327, 1392 |
| BsiHKAI | GWGCWC | 3 cut(s) | 267, 417, 863 |
| BsiHKCI | CYCGRG | 3 cut(s) | 260, 321, 1351 |
| BsiSI | CCGG | 7 cut(s) | 17, 288, 306, 314, 328, 381, 600 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 334, 352, 800, 1055, 1225, 1538 |
| BsmAI | GTCTC | 2 cut(s) | 569, 622 |
| BsnI | GGCC | 3 cut(s) | 1003, 1327, 1392 |
| Bso31I | GGTCTC | 1 cut(s) | 569 |
| BsoBI | CYCGRG | 3 cut(s) | 260, 321, 1351 |
| Bsp119I | TTCGAA | 1 cut(s) | 954 |
| Bsp1286I | GDGCHC | 3 cut(s) | 267, 417, 863 |
| Bsp143I | GATC | 7 cut(s) | 584, 803, 898, 1223, 1245, 1257, 1468 |
| Bsp19I | CCATGG | 1 cut(s) | 134 |
| BspANI | GGCC | 3 cut(s) | 1003, 1327, 1392 |
| BspCNI | CTCAG | 5 cut(s) | 190, 632, 735, 823, 892 |
| BspFNI | CGCG | 1 cut(s) | 23 |
| BspLI | GGNNCC | 4 cut(s) | 50, 295, 326, 1326 |
| BspMAI | CTGCAG | 1 cut(s) | 814 |
| BspMI | ACCTGC | 1 cut(s) | 495 |
| BspOI | GCTAGC | 1 cut(s) | 1596 |
| BspPI | GGATC | 2 cut(s) | 579, 811 |
| BspT104I | TTCGAA | 1 cut(s) | 954 |
| BspTNI | GGTCTC | 1 cut(s) | 569 |
| BsrBI | CCGCTC | 1 cut(s) | 98 |
| BssECI | CCNNGG | 2 cut(s) | 134, 570 |
| BssMI | GATC | 7 cut(s) | 584, 803, 898, 1223, 1245, 1257, 1468 |
| BssSI | CACGAG | 1 cut(s) | 1547 |
| BssT1I | CCWWGG | 1 cut(s) | 134 |
| Bst2BI | CACGAG | 1 cut(s) | 1547 |
| Bst2UI | CCWGG | 1 cut(s) | 1162 |
| Bst4CI | ACNGT | 3 cut(s) | 343, 1086, 1317 |
| Bst6I | CTCTTC | 2 cut(s) | 191, 879 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1157, 1567 |
| BstBI | TTCGAA | 1 cut(s) | 954 |
| BstC8I | GCNNGC | 8 cut(s) | 998, 1017, 1186, 1329, 1462, 1499, 1529, 1594 |
| BstDEI | CTNAG | 6 cut(s) | 43, 177, 619, 743, 831, 879 |
| BstDSI | CCRYGG | 2 cut(s) | 134, 570 |
| BstEII | GGTNACC | 1 cut(s) | 337 |
| BstF5I | GGATG | 2 cut(s) | 66, 1399 |
| BstFNI | CGCG | 1 cut(s) | 23 |
| BstH2I | RGCGCY | 1 cut(s) | 14 |
| BstHHI | GCGC | 3 cut(s) | 13, 504, 793 |
| BstKTI | GATC | 7 cut(s) | 587, 806, 901, 1226, 1248, 1260, 1471 |
| BstMAI | GTCTC | 2 cut(s) | 569, 622 |
| BstMBI | GATC | 7 cut(s) | 584, 803, 898, 1223, 1245, 1257, 1468 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 10, 250, 362, 371, 1009, 1157, 1166, 1558, 1567 |
| BstNI | CCWGG | 1 cut(s) | 1162 |
| BstNSI | RCATGY | 1 cut(s) | 1464 |
| BstPI | GGTNACC | 1 cut(s) | 337 |
| BstSCI | CCNGG | 6 cut(s) | 286, 305, 313, 327, 380, 1160 |
| BstSFI | CTRYAG | 1 cut(s) | 810 |
| BstUI | CGCG | 1 cut(s) | 23 |
| BstV1I | GCAGC | 8 cut(s) | 352, 796, 824, 857, 931, 1024, 1156, 1225 |
| BstV2I | GAAGAC | 1 cut(s) | 1304 |
| BsuRI | GGCC | 3 cut(s) | 1003, 1327, 1392 |
| BtgI | CCRYGG | 2 cut(s) | 134, 570 |
| BtsCI | GGATG | 2 cut(s) | 66, 1399 |
| BtsI | GCAGTG | 1 cut(s) | 1489 |
| BtsIMutI | CAGTG | 3 cut(s) | 1175, 1253, 1489 |
| BveI | ACCTGC | 1 cut(s) | 495 |
| Cac8I | GCNNGC | 8 cut(s) | 998, 1017, 1186, 1329, 1462, 1499, 1529, 1594 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1084 |
| CfoI | GCGC | 3 cut(s) | 13, 504, 793 |
| Cfr13I | GGNCC | 4 cut(s) | 28, 325, 1325, 1391 |
| CseI | GACGC | 2 cut(s) | 29, 524 |
| CviAII | CATG | 6 cut(s) | 135, 907, 1152, 1288, 1461, 1466 |
| DdeI | CTNAG | 6 cut(s) | 43, 177, 619, 743, 831, 879 |
| DpnI | GATC | 7 cut(s) | 586, 805, 900, 1225, 1247, 1259, 1470 |
| DpnII | GATC | 7 cut(s) | 584, 803, 898, 1223, 1245, 1257, 1468 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 26 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 26 |
| Eam1104I | CTCTTC | 2 cut(s) | 191, 879 |
| EarI | CTCTTC | 2 cut(s) | 191, 879 |
| EciI | GGCGGA | 2 cut(s) | 181, 528 |
| Ecl136II | GAGCTC | 2 cut(s) | 265, 415 |
| Eco130I | CCWWGG | 1 cut(s) | 134 |
| Eco24I | GRGCYC | 2 cut(s) | 267, 417 |
| Eco31I | GGTCTC | 1 cut(s) | 569 |
| Eco47I | GGWCC | 2 cut(s) | 28, 325 |
| Eco53kI | GAGCTC | 2 cut(s) | 265, 415 |
| Eco88I | CYCGRG | 3 cut(s) | 260, 321, 1351 |
| Eco91I | GGTNACC | 1 cut(s) | 337 |
| EcoICRI | GAGCTC | 2 cut(s) | 265, 415 |
| EcoO65I | GGTNACC | 1 cut(s) | 337 |
| EcoRII | CCWGG | 1 cut(s) | 1160 |
| EcoT14I | CCWWGG | 1 cut(s) | 134 |
| EcoT22I | ATGCAT | 2 cut(s) | 785, 1153 |
| EcoT38I | GRGCYC | 2 cut(s) | 267, 417 |
| ErhI | CCWWGG | 1 cut(s) | 134 |
| FaeI | CATG | 6 cut(s) | 138, 910, 1155, 1291, 1464, 1469 |
| FatI | CATG | 6 cut(s) | 134, 906, 1151, 1287, 1460, 1465 |
| FauI | CCCGC | 1 cut(s) | 401 |
| FauNDI | CATATG | 1 cut(s) | 1411 |
| FbaI | TGATCA | 1 cut(s) | 1468 |
| FokI | GGATG | 2 cut(s) | 53, 1386 |
| FriOI | GRGCYC | 2 cut(s) | 267, 417 |
| FspBI | CTAG | 6 cut(s) | 614, 1106, 1332, 1377, 1580, 1593 |
| GlaI | GCGC | 3 cut(s) | 12, 503, 792 |
| GsaI | CCCAGC | 2 cut(s) | 739, 1031 |
| GsuI | CTGGAG | 1 cut(s) | 1028 |
| HaeII | RGCGCY | 1 cut(s) | 14 |
| HaeIII | GGCC | 3 cut(s) | 1003, 1327, 1392 |
| HapII | CCGG | 7 cut(s) | 17, 288, 306, 314, 328, 381, 600 |
| HgaI | GACGC | 2 cut(s) | 29, 524 |
| HhaI | GCGC | 3 cut(s) | 13, 504, 793 |
| Hin1II | CATG | 6 cut(s) | 138, 910, 1155, 1291, 1464, 1469 |
| Hin6I | GCGC | 3 cut(s) | 11, 502, 791 |
| HinP1I | GCGC | 3 cut(s) | 11, 502, 791 |
| HinfI | GANTC | 2 cut(s) | 745, 1109 |
| HpaII | CCGG | 7 cut(s) | 17, 288, 306, 314, 328, 381, 600 |
| HphI | GGTGA | 6 cut(s) | 331, 647, 740, 977, 1043, 1489 |
| Hpy188I | TCNGA | 3 cut(s) | 298, 1123, 1473 |
| Hpy188III | TCNNGA | 3 cut(s) | 556, 896, 1007 |
| Hpy99I | CGWCG | 1 cut(s) | 942 |
| HpyAV | CCTTC | 7 cut(s) | 166, 175, 650, 672, 712, 1277, 1517 |
| HpyCH4III | ACNGT | 3 cut(s) | 343, 1086, 1317 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 10, 250, 362, 371, 1009, 1157, 1166, 1558, 1567 |
| HpyF3I | CTNAG | 6 cut(s) | 43, 177, 619, 743, 831, 879 |
| Hsp92II | CATG | 6 cut(s) | 138, 910, 1155, 1291, 1464, 1469 |
| HspAI | GCGC | 3 cut(s) | 11, 502, 791 |
| Ksp22I | TGATCA | 1 cut(s) | 1468 |
| Kzo9I | GATC | 7 cut(s) | 584, 803, 898, 1223, 1245, 1257, 1468 |
| LmnI | GCTCC | 5 cut(s) | 186, 299, 412, 691, 1009 |
| Lsp1109I | GCAGC | 8 cut(s) | 352, 796, 824, 857, 931, 1024, 1156, 1225 |
| LweI | GCATC | 3 cut(s) | 770, 844, 1028 |
| MaeI | CTAG | 6 cut(s) | 614, 1106, 1332, 1377, 1580, 1593 |
| MaeIII | GTNAC | 5 cut(s) | 337, 667, 746, 1080, 1542 |
| MalI | GATC | 7 cut(s) | 586, 805, 900, 1225, 1247, 1259, 1470 |
| MbiI | CCGCTC | 1 cut(s) | 98 |
| MboI | GATC | 7 cut(s) | 584, 803, 898, 1223, 1245, 1257, 1468 |
| MboII | GAAGA | 6 cut(s) | 133, 178, 830, 866, 968, 1309 |
| MfeI | CAATTG | 1 cut(s) | 672 |
| MhlI | GDGCHC | 3 cut(s) | 267, 417, 863 |
| MluCI | AATT | 4 cut(s) | 150, 672, 868, 1565 |
| MlyI | GAGTC | 1 cut(s) | 754 |
| MmeI | TCCRAC | 1 cut(s) | 851 |
| Mph1103I | ATGCAT | 2 cut(s) | 785, 1153 |
| MseI | TTAA | 4 cut(s) | 590, 768, 1053, 1431 |
| MspA1I | CMGCKG | 2 cut(s) | 809, 1169 |
| MspI | CCGG | 7 cut(s) | 17, 288, 306, 314, 328, 381, 600 |
| MspR9I | CCNGG | 6 cut(s) | 288, 307, 315, 329, 382, 1162 |
| MunI | CAATTG | 1 cut(s) | 672 |
| MvaI | CCWGG | 1 cut(s) | 1162 |
| MvnI | CGCG | 1 cut(s) | 23 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 10, 250, 362, 371, 1009, 1157, 1166, 1558, 1567 |
| NciI | CCSGG | 5 cut(s) | 288, 307, 315, 329, 382 |
| NcoI | CCATGG | 1 cut(s) | 134 |
| NdeI | CATATG | 1 cut(s) | 1411 |
| NdeII | GATC | 7 cut(s) | 584, 803, 898, 1223, 1245, 1257, 1468 |
| NheI | GCTAGC | 1 cut(s) | 1592 |
| NlaIII | CATG | 6 cut(s) | 138, 910, 1155, 1291, 1464, 1469 |
| NlaIV | GGNNCC | 4 cut(s) | 50, 295, 326, 1326 |
| NmuCI | GTSAC | 3 cut(s) | 337, 746, 1542 |
| NsiI | ATGCAT | 2 cut(s) | 785, 1153 |
| NspI | RCATGY | 1 cut(s) | 1464 |
| NspV | TTCGAA | 1 cut(s) | 954 |
| PaeI | GCATGC | 1 cut(s) | 1464 |
| PaeR7I | CTCGAG | 2 cut(s) | 260, 1351 |
| PaqCI | CACCTGC | 1 cut(s) | 495 |
| PfeI | GAWTC | 1 cut(s) | 1109 |
| PflFI | GACNNNGTC | 1 cut(s) | 307 |
| PleI | GAGTC | 1 cut(s) | 753 |
| PpsI | GAGTC | 1 cut(s) | 753 |
| Psp124BI | GAGCTC | 2 cut(s) | 267, 417 |
| Psp6I | CCWGG | 1 cut(s) | 1160 |
| PspEI | GGTNACC | 1 cut(s) | 337 |
| PspFI | CCCAGC | 2 cut(s) | 735, 1027 |
| PspGI | CCWGG | 1 cut(s) | 1160 |
| PspN4I | GGNNCC | 4 cut(s) | 50, 295, 326, 1326 |
| PspPI | GGNCC | 4 cut(s) | 28, 325, 1325, 1391 |
| PspXI | VCTCGAGB | 2 cut(s) | 260, 1351 |
| PstI | CTGCAG | 1 cut(s) | 814 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1084 |
| PsyI | GACNNNGTC | 1 cut(s) | 307 |
| PvuII | CAGCTG | 2 cut(s) | 809, 1169 |
| SacI | GAGCTC | 2 cut(s) | 267, 417 |
| SaqAI | TTAA | 4 cut(s) | 590, 768, 1053, 1431 |
| Sau3AI | GATC | 7 cut(s) | 584, 803, 898, 1223, 1245, 1257, 1468 |
| Sau96I | GGNCC | 4 cut(s) | 28, 325, 1325, 1391 |
| SchI | GAGTC | 1 cut(s) | 754 |
| ScrFI | CCNGG | 6 cut(s) | 288, 307, 315, 329, 382, 1162 |
| SduI | GDGCHC | 3 cut(s) | 267, 417, 863 |
| SfaNI | GCATC | 3 cut(s) | 770, 844, 1028 |
| SfcI | CTRYAG | 1 cut(s) | 810 |
| Sfr274I | CTCGAG | 2 cut(s) | 260, 1351 |
| SfuI | TTCGAA | 1 cut(s) | 954 |
| SinI | GGWCC | 2 cut(s) | 28, 325 |
| SlaI | CTCGAG | 2 cut(s) | 260, 1351 |
| SmlI | CTYRAG | 4 cut(s) | 248, 260, 1351, 1502 |
| SmoI | CTYRAG | 4 cut(s) | 248, 260, 1351, 1502 |
| SphI | GCATGC | 1 cut(s) | 1464 |
| Sse9I | AATT | 4 cut(s) | 150, 672, 868, 1565 |
| SspMI | CTAG | 6 cut(s) | 614, 1106, 1332, 1377, 1580, 1593 |
| SstI | GAGCTC | 2 cut(s) | 267, 417 |
| StyD4I | CCNGG | 6 cut(s) | 286, 305, 313, 327, 380, 1160 |
| StyI | CCWWGG | 1 cut(s) | 134 |
| TaaI | ACNGT | 3 cut(s) | 343, 1086, 1317 |
| TaqI | TCGA | 4 cut(s) | 261, 954, 1352, 1588 |
| TaqII | GACCGA | 1 cut(s) | 391 |
| TasI | AATT | 4 cut(s) | 150, 672, 868, 1565 |
| TauI | GCSGC | 7 cut(s) | 16, 294, 371, 374, 395, 796, 1003 |
| TfiI | GAWTC | 1 cut(s) | 1109 |
| Tru1I | TTAA | 4 cut(s) | 590, 768, 1053, 1431 |
| Tru9I | TTAA | 4 cut(s) | 590, 768, 1053, 1431 |
| TscAI | CASTG | 3 cut(s) | 1182, 1260, 1489 |
| TseFI | GTSAC | 3 cut(s) | 337, 746, 1542 |
| TseI | GCWGC | 8 cut(s) | 365, 809, 812, 845, 944, 1012, 1169, 1238 |
| Tsp45I | GTSAC | 3 cut(s) | 337, 746, 1542 |
| TspGWI | ACGGA | 1 cut(s) | 704 |
| TspRI | CASTG | 3 cut(s) | 1182, 1260, 1489 |
| Tth111I | GACNNNGTC | 1 cut(s) | 307 |
| VpaK11BI | GGWCC | 2 cut(s) | 28, 325 |
| XceI | RCATGY | 1 cut(s) | 1464 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 132 |
| XhoI | CTCGAG | 2 cut(s) | 260, 1351 |
| XspI | CTAG | 6 cut(s) | 614, 1106, 1332, 1377, 1580, 1593 |
| Zsp2I | ATGCAT | 2 cut(s) | 785, 1153 |