MD10G1257000.v1.1

Nucleoporin protein Ndc1-Nup

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0014392
Physical Location & Seq
Reverse (-)
35129858 .. 35133484
3627 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1257000.v1.1.491

Sequence Viewer

Length: 1653 bp
ATGCCGCCTCCAGCTTCACCGTCTATGCCGCCGGAGATGGTGGTCCACAACAGCTTCTTAGGGTTCCTCGTATGGCAGTCCATCCCCTCCATCGTCATCTTCTTCCTGTTCAAAACCCTCTCATCAGCCGTCCCCTCCGCTTCTCCCTCGGCCACCAAACCCCCACTCACATTCCCGTTCGCCCCATCGATATTCGCCCTTTTTACGTTTTTGACCTTCCACCTTTCCCAGGTCCTCTTCTCGTTCTCGCTCTCCCTCGTCTCCTCGCCCCACCCCCACCGCCCTGCTTCTCTTCTCCAGCTCGTTCTTGGGCTCGTTCGATTCCTTTCCATTCCGGGCGTCCCTGATTCGTCAGAGACCCCGGATTCCCGGGCCCGGGCTAAGCTTTCGGTGGGTTTGCTGATGTTTTTGGGCGCCGCGGCGGTGTCAGGTTTTGTTGCGGTGGCTTCGGTGTGTGGGGGGTTTGGCGATGGGCTTTCGGCGATTGGGAGAGTGGGGTTTAGGGGTTTAGTGATGGGGTTGCTTTATGGGCTGTATTATGTGTATAATCGCAGGTGGGTCTTGGAGTTTCCCATTATTCAGCGTCCTCCTTTTTTCAGCTTCAAAATGGGGCTTCCTTCGGCTATCACACGATCCTTGAAGCTTTCCTTTGTGGCGTACCTTTTTTCAGCTGCTCTGCTGGTGTTTCTGCCACACCACAATCAGAACCAGGCTACAACTGGAAAGTTTATTGCTGAGCAGATCAGACTCTACACTGGGAGTTTCTTAGTGTTACTATGCTGGGAACTAAGTCACCATTTACATCGGGTGCTTCATACAAAGAGATTCGTATTTGCACCACCTAAAGGATCAGCGGCAGCAGAAACAAATCCAAGTGAGATTCTCCTTGCAGCTCTGGAGGAGAGCAGTCCTAGTTCTCTTCTTCAGTATCTTGCCTATCTTGATCTCTGTATGGTTTGCGAGAATAATGTGGATGCTTGGAGAAGAGCTGCATTTTTTGAGGAAACTGGTGAAACTTACAGAAGAGTTATATCTGTATGCTTGCGGCCTCTGGAGCAGCTTGCATCCAAGATGGGTGAAGTCTTGGAAAGTTCCGTTGAAAACGGCTCCCGAATATCCAGTCAGTTACTGCCCCCAACCGACCAGCGACTAGACTCAAAATACTCTGAGCCTTTGGATAACTTCCAGTTGTATGCATGGTGTGCATGGACAGCTGCCTCGCTAACTGCATGCTCACACAAAGAGGACAGATACGGGGTTGCCCAGATCACTGGTAGTAACGCTGCTGTGATGTCAACGCTGATTTCTTGCCTTCTTGCTGTTGAAACATACATGGGGAAGAAGACCACTTTGCTGTCTGCTAATCAGTTCATGGGGTTAACCGGTTTTAAATTGAGAAACTCAAGCATGGCCAATACTAGCATGAGTAAAAAGAGAGCCAGCCCGCTTCATTCAAAAGCATATGCTGTTGCTGATGTACTGAGGAACTCAATCTACCAAATTGTGTCTGCTTTCCATGATCAGATGGCAGCAAGCAGTGCTAAAAAGGGCATTCTTGAGAAGGATTGGATCGTTAGGGGCAAGCCTCCTTTCGGACCACGCGAACTTCTCGTGCAGAAACTGCTTCAATTCCTCGACTTTAGAGCTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Ndc1_Nup

Protein Analysis

551

Amino Acids

60.48

Weight (kDa)

9.39

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ndc1_Nup PF09531 169 - 363 3.1e-14 Nucleoporin protein Ndc1-Nup
Ndc1_Nup PF09531 382 - 508 1.2e-09 Nucleoporin protein Ndc1-Nup
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73240
fragaria_vesca FvH4_3g04970
malus_domestica MD05G1278400.v1.1 MD10G1257000.v1.1
prunus_persica Prupe.4G086400_v2.0.a1
pyrus_communis pycom05g25900 pycom10g21270
rosa_chinensis RchiOBHm_Chr5g0015011
rosa_laevigata RLG00000032160
rosa_multiflora Rmu_sc0004889.1_g000023
rosa_roxburghii Rroxscaffold_1G00061530
rosa_rugosa Rorug05G0022800
rosa_samantha Rh5AG118000 Rh5BG115200 Rh5CG126500 Rh5DG114700
rosa_wichuraiana Rw5G010170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 543
Acc36I ACCTGC 1 cut(s) 543
AccB1I GGYRCC 1 cut(s) 413
AccII CGCG 2 cut(s) 419, 1602
AclWI GGATC 3 cut(s) 627, 856, 1577
AcoI YGGCCR 2 cut(s) 150, 1410
AcuI CTGAAG 1 cut(s) 908
AcyI GRCGYC 2 cut(s) 339, 414
AfaI GTAC 2 cut(s) 659, 1479
AfiI CCNNNNNNNGG 5 cut(s) 229, 375, 376, 845, 1592
AgeI ACCGGT 1 cut(s) 1382
AgsI TTSAA 7 cut(s) 112, 604, 640, 1100, 1325, 1455, 1628
AjnI CCWGG 2 cut(s) 228, 708
Alw26I GTCTC 2 cut(s) 265, 350
AlwI GGATC 3 cut(s) 627, 856, 1577
AlwNI CAGNNNCTG 2 cut(s) 1129, 1621
Ama87I CYCGRG 2 cut(s) 369, 375
AoxI GGCC 4 cut(s) 150, 372, 1046, 1410
ApaI GGGCCC 1 cut(s) 376
ApeKI GCWGC 8 cut(s) 671, 857, 890, 989, 1057, 1214, 1283, 1529
ArsI GACNNNNNNTTYG 2 cut(s) 1105, 1137
AsiGI ACCGGT 1 cut(s) 1382
AspLEI GCGC 1 cut(s) 416
AspS9I GGNCC 5 cut(s) 43, 232, 372, 373, 1595
AsuC2I CCSGG 6 cut(s) 336, 362, 370, 371, 376, 377
AsuHPI GGTGA 4 cut(s) 9, 785, 1022, 1088
AsuNHI GCTAGC 1 cut(s) 1646
AvaI CYCGRG 2 cut(s) 369, 375
AvaII GGWCC 3 cut(s) 43, 232, 1595
BaeGI GKGCMC 1 cut(s) 376
BalI TGGCCA 1 cut(s) 1412
BanI GGYRCC 1 cut(s) 413
BanII GRGCYC 2 cut(s) 315, 376
BauI CACGAG 1 cut(s) 1610
BbsI GAAGAC 1 cut(s) 1349
BbvI GCAGC 8 cut(s) 658, 869, 902, 976, 1069, 1201, 1270, 1541
BccI CCATC 8 cut(s) 31, 89, 98, 193, 464, 508, 1066, 1519
BceAI ACGGC 2 cut(s) 113, 1120
BciT130I CCWGG 2 cut(s) 230, 710
BclI TGATCA 1 cut(s) 1519
BcnI CCSGG 6 cut(s) 336, 362, 370, 371, 376, 377
BcoDI GTCTC 2 cut(s) 265, 350
BfaI CTAG 4 cut(s) 912, 1151, 1419, 1647
BfoI RGCGCY 1 cut(s) 417
BfuAI ACCTGC 1 cut(s) 543
BlpI GCTNAGC 2 cut(s) 381, 735
Bme1390I CCNGG 8 cut(s) 230, 336, 362, 370, 371, 376, 377, 710
Bme18I GGWCC 3 cut(s) 43, 232, 1595
BmeT110I CYCGRG 2 cut(s) 369, 375
BmgT120I GGNCC 5 cut(s) 43, 232, 372, 373, 1595
BmiI GGNNCC 4 cut(s) 65, 374, 415, 1108
BmrFI CCNGG 8 cut(s) 230, 336, 362, 370, 371, 376, 377, 710
BmrI ACTGGG 1 cut(s) 765
BmsI GCATC 2 cut(s) 964, 1073
BmtI GCTAGC 1 cut(s) 1650
BmuI ACTGGG 1 cut(s) 765
BpiI GAAGAC 1 cut(s) 1349
BpmI CTGGAG 3 cut(s) 281, 917, 1073
Bpu1102I GCTNAGC 2 cut(s) 381, 735
BpuEI CTTGAG 2 cut(s) 1387, 1577
BpuMI CCSGG 6 cut(s) 336, 362, 370, 371, 376, 377
Bsa29I ATCGAT 1 cut(s) 188
BsaHI GRCGYC 2 cut(s) 339, 414
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 6 cut(s) 147, 228, 360, 369, 375, 417
BsaWI WCCGGW 1 cut(s) 1382
Bsc4I CCNNNNNNNGG 5 cut(s) 229, 375, 376, 845, 1592
Bse118I RCCGGY 1 cut(s) 1382
Bse1I ACTGG 6 cut(s) 724, 760, 1012, 1119, 1186, 1276
BseBI CCWGG 2 cut(s) 230, 710
BseCI ATCGAT 1 cut(s) 188
BseDI CCNNGG 6 cut(s) 147, 228, 360, 369, 375, 417
BseGI GGATG 3 cut(s) 81, 979, 1064
BseLI CCNNNNNNNGG 5 cut(s) 229, 375, 376, 845, 1592
BseMII CTCAG 3 cut(s) 726, 1158, 1472
BseNI ACTGG 6 cut(s) 724, 760, 1012, 1119, 1186, 1276
BseRI GAGGAG 2 cut(s) 253, 914
BseSI GKGCMC 1 cut(s) 376
BseXI GCAGC 8 cut(s) 658, 869, 902, 976, 1069, 1201, 1270, 1541
BseYI CCCAGC 1 cut(s) 780
BsgI GTGCAG 1 cut(s) 1634
Bsh1236I CGCG 2 cut(s) 419, 1602
BshFI GGCC 4 cut(s) 152, 374, 1048, 1412
BshNI GGYRCC 1 cut(s) 413
BshTI ACCGGT 1 cut(s) 1382
BshVI ATCGAT 1 cut(s) 188
BsiHKCI CYCGRG 2 cut(s) 369, 375
BsiSI CCGG 6 cut(s) 32, 335, 362, 370, 376, 1383
BslFI GGGAC 2 cut(s) 116, 326
BslI CCNNNNNNNGG 5 cut(s) 229, 375, 376, 845, 1592
BsmAI GTCTC 2 cut(s) 265, 350
BsmBI CGTCTC 1 cut(s) 265
BsmFI GGGAC 2 cut(s) 116, 326
BsmI GAATGC 1 cut(s) 1551
BsnI GGCC 4 cut(s) 152, 374, 1048, 1412
Bso31I GGTCTC 1 cut(s) 350
BsoBI CYCGRG 2 cut(s) 369, 375
Bsp120I GGGCCC 1 cut(s) 372
Bsp1286I GDGCHC 2 cut(s) 315, 376
Bsp143I GATC 7 cut(s) 632, 741, 848, 943, 1266, 1519, 1569
Bsp1720I GCTNAGC 2 cut(s) 381, 735
BspANI GGCC 4 cut(s) 152, 374, 1048, 1412
BspCNI CTCAG 3 cut(s) 727, 1159, 1473
BspDI ATCGAT 1 cut(s) 188
BspFNI CGCG 2 cut(s) 419, 1602
BspLI GGNNCC 4 cut(s) 65, 374, 415, 1108
BspMI ACCTGC 1 cut(s) 543
BspOI GCTAGC 1 cut(s) 1650
BspPI GGATC 3 cut(s) 627, 856, 1577
BspQI GCTCTTC 1 cut(s) 979
BspT107I GGYRCC 1 cut(s) 413
BspTNI GGTCTC 1 cut(s) 350
BsrFI RCCGGY 1 cut(s) 1382
BsrI ACTGG 6 cut(s) 724, 760, 1012, 1119, 1186, 1276
BssAI RCCGGY 1 cut(s) 1382
BssECI CCNNGG 6 cut(s) 147, 228, 360, 369, 375, 417
BssMI GATC 7 cut(s) 632, 741, 848, 943, 1266, 1519, 1569
BssNI GRCGYC 2 cut(s) 339, 414
BssSI CACGAG 1 cut(s) 1610
Bst2BI CACGAG 1 cut(s) 1610
Bst2UI CCWGG 2 cut(s) 230, 710
Bst4CI ACNGT 1 cut(s) 21
Bst6I CTCTTC 5 cut(s) 242, 297, 924, 979, 1018
BstACI GRCGYC 2 cut(s) 339, 414
BstAPI GCANNNNNTGC 3 cut(s) 1202, 1538, 1621
BstC8I GCNNGC 8 cut(s) 1043, 1062, 1231, 1441, 1445, 1534, 1583, 1648
BstDEI CTNAG 7 cut(s) 58, 381, 735, 766, 788, 1167, 1481
BstDSI CCRYGG 1 cut(s) 417
BstENI CCTNNNNNAGG 1 cut(s) 227
BstF5I GGATG 3 cut(s) 81, 979, 1064
BstFNI CGCG 2 cut(s) 419, 1602
BstH2I RGCGCY 1 cut(s) 417
BstHHI GCGC 1 cut(s) 416
BstKTI GATC 7 cut(s) 635, 744, 851, 946, 1269, 1522, 1572
BstMAI GTCTC 2 cut(s) 265, 350
BstMBI GATC 7 cut(s) 632, 741, 848, 943, 1266, 1519, 1569
BstMWI GCNNNNNNNGC 6 cut(s) 529, 1054, 1202, 1211, 1538, 1621
BstNI CCWGG 2 cut(s) 230, 710
BstNSI RCATGY 1 cut(s) 1233
BstSCI CCNGG 8 cut(s) 228, 334, 360, 368, 369, 374, 375, 708
BstSLI GKGCMC 1 cut(s) 376
BstUI CGCG 2 cut(s) 419, 1602
BstV1I GCAGC 8 cut(s) 658, 869, 902, 976, 1069, 1201, 1270, 1541
BstV2I GAAGAC 1 cut(s) 1349
BstXI CCANNNNNNTGG 1 cut(s) 1271
Bsu15I ATCGAT 1 cut(s) 188
BsuRI GGCC 4 cut(s) 152, 374, 1048, 1412
BsuTUI ATCGAT 1 cut(s) 188
BtgI CCRYGG 1 cut(s) 417
BtgZI GCGATG 1 cut(s) 483
BtsCI GGATG 3 cut(s) 81, 979, 1064
BtsI GCAGTG 1 cut(s) 1543
BtsIMutI CAGTG 3 cut(s) 753, 1269, 1543
BveI ACCTGC 1 cut(s) 543
Cac8I GCNNGC 8 cut(s) 1043, 1062, 1231, 1441, 1445, 1534, 1583, 1648
CaiI CAGNNNCTG 2 cut(s) 1129, 1621
CfoI GCGC 1 cut(s) 416
Cfr10I RCCGGY 1 cut(s) 1382
Cfr13I GGNCC 5 cut(s) 43, 232, 372, 373, 1595
Cfr42I CCGCGG 1 cut(s) 420
Cfr9I CCCGGG 2 cut(s) 369, 375
ClaI ATCGAT 1 cut(s) 188
CseI GACGC 2 cut(s) 328, 572
Csp6I GTAC 2 cut(s) 658, 1478
CspAI ACCGGT 1 cut(s) 1382
CviAII CATG 8 cut(s) 1197, 1206, 1230, 1333, 1372, 1408, 1423, 1517
CviQI GTAC 2 cut(s) 658, 1478
DdeI CTNAG 7 cut(s) 58, 381, 735, 766, 788, 1167, 1481
DinI GGCGCC 1 cut(s) 415
DpnI GATC 7 cut(s) 634, 743, 850, 945, 1268, 1521, 1571
DpnII GATC 7 cut(s) 632, 741, 848, 943, 1266, 1519, 1569
DraI TTTAAA 1 cut(s) 1390
EaeI YGGCCR 2 cut(s) 150, 1410
Eam1104I CTCTTC 5 cut(s) 242, 297, 924, 979, 1018
EarI CTCTTC 5 cut(s) 242, 297, 924, 979, 1018
Eco24I GRGCYC 2 cut(s) 315, 376
Eco31I GGTCTC 1 cut(s) 350
Eco47I GGWCC 3 cut(s) 43, 232, 1595
Eco57I CTGAAG 1 cut(s) 908
Eco88I CYCGRG 2 cut(s) 369, 375
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 2 cut(s) 228, 708
EcoT22I ATGCAT 1 cut(s) 1198
EcoT38I GRGCYC 2 cut(s) 315, 376
EgeI GGCGCC 1 cut(s) 415
EheI GGCGCC 1 cut(s) 415
Esp3I CGTCTC 1 cut(s) 265
FaeI CATG 8 cut(s) 1200, 1209, 1233, 1336, 1375, 1411, 1426, 1520
FalI AAGNNNNNCTT 2 cut(s) 632, 664
FaqI GGGAC 2 cut(s) 116, 326
FatI CATG 8 cut(s) 1196, 1205, 1229, 1332, 1371, 1407, 1422, 1516
FauI CCCGC 1 cut(s) 1452
FauNDI CATATG 1 cut(s) 1462
FbaI TGATCA 1 cut(s) 1519
FokI GGATG 3 cut(s) 68, 986, 1051
FriOI GRGCYC 2 cut(s) 315, 376
FspBI CTAG 4 cut(s) 912, 1151, 1419, 1647
GlaI GCGC 1 cut(s) 415
GsaI CCCAGC 1 cut(s) 784
GsuI CTGGAG 3 cut(s) 281, 917, 1073
HaeII RGCGCY 1 cut(s) 417
HaeIII GGCC 4 cut(s) 152, 374, 1048, 1412
HapII CCGG 6 cut(s) 32, 335, 362, 370, 376, 1383
HgaI GACGC 2 cut(s) 328, 572
HhaI GCGC 1 cut(s) 416
Hin1I GRCGYC 2 cut(s) 339, 414
Hin1II CATG 8 cut(s) 1200, 1209, 1233, 1336, 1375, 1411, 1426, 1520
Hin6I GCGC 1 cut(s) 414
HinP1I GCGC 1 cut(s) 414
HincII GTYRAC 2 cut(s) 1296, 1380
HindII GTYRAC 2 cut(s) 1296, 1380
HindIII AAGCTT 2 cut(s) 383, 641
HinfI GANTC 7 cut(s) 321, 347, 365, 747, 825, 880, 1154
HpaI GTTAAC 1 cut(s) 1380
HpaII CCGG 6 cut(s) 32, 335, 362, 370, 376, 1383
HphI GGTGA 4 cut(s) 9, 785, 1022, 1088
Hpy166II GTNNAC 3 cut(s) 46, 1296, 1380
Hpy188I TCNGA 6 cut(s) 355, 705, 746, 1168, 1524, 1595
Hpy188III TCNNGA 5 cut(s) 896, 941, 1052, 1110, 1556
Hpy8I GTNNAC 3 cut(s) 46, 1296, 1380
HpyAV CCTTC 4 cut(s) 226, 627, 1322, 1555
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 8 cut(s) 836, 890, 992, 1064, 1196, 1205, 1229, 1615
HpyF10VI GCNNNNNNNGC 6 cut(s) 529, 1054, 1202, 1211, 1538, 1621
HpyF3I CTNAG 7 cut(s) 58, 381, 735, 766, 788, 1167, 1481
HpySE526I ACGT 1 cut(s) 206
Hsp92I GRCGYC 2 cut(s) 339, 414
Hsp92II CATG 8 cut(s) 1200, 1209, 1233, 1336, 1375, 1411, 1426, 1520
HspAI GCGC 1 cut(s) 414
KasI GGCGCC 1 cut(s) 413
Ksp22I TGATCA 1 cut(s) 1519
KspAI GTTAAC 1 cut(s) 1380
KspI CCGCGG 1 cut(s) 420
Kzo9I GATC 7 cut(s) 632, 741, 848, 943, 1266, 1519, 1569
LguI GCTCTTC 1 cut(s) 979
LmnI GCTCC 2 cut(s) 1054, 1112
Lsp1109I GCAGC 8 cut(s) 658, 869, 902, 976, 1069, 1201, 1270, 1541
LweI GCATC 2 cut(s) 964, 1073
MaeI CTAG 4 cut(s) 912, 1151, 1419, 1647
MaeII ACGT 1 cut(s) 206
MaeIII GTNAC 4 cut(s) 771, 791, 1125, 1277
MalI GATC 7 cut(s) 634, 743, 850, 945, 1268, 1521, 1571
MboI GATC 7 cut(s) 632, 741, 848, 943, 1266, 1519, 1569
MhlI GDGCHC 2 cut(s) 315, 376
MlsI TGGCCA 1 cut(s) 1412
MluCI AATT 3 cut(s) 1391, 1500, 1628
MluNI TGGCCA 1 cut(s) 1412
Mly113I GGCGCC 1 cut(s) 414
MlyI GAGTC 2 cut(s) 741, 1148
Mox20I TGGCCA 1 cut(s) 1412
Mph1103I ATGCAT 1 cut(s) 1198
MscI TGGCCA 1 cut(s) 1412
MseI TTAA 2 cut(s) 1379, 1389
Msp20I TGGCCA 1 cut(s) 1412
MspA1I CMGCKG 4 cut(s) 419, 671, 854, 1214
MspI CCGG 6 cut(s) 32, 335, 362, 370, 376, 1383
MspR9I CCNGG 8 cut(s) 230, 336, 362, 370, 371, 376, 377, 710
Mva1269I GAATGC 1 cut(s) 1551
MvaI CCWGG 2 cut(s) 230, 710
MvnI CGCG 2 cut(s) 419, 1602
MwoI GCNNNNNNNGC 6 cut(s) 529, 1054, 1202, 1211, 1538, 1621
NarI GGCGCC 1 cut(s) 414
NciI CCSGG 6 cut(s) 336, 362, 370, 371, 376, 377
NdeI CATATG 1 cut(s) 1462
NdeII GATC 7 cut(s) 632, 741, 848, 943, 1266, 1519, 1569
NheI GCTAGC 1 cut(s) 1646
NlaIII CATG 8 cut(s) 1200, 1209, 1233, 1336, 1375, 1411, 1426, 1520
NlaIV GGNNCC 4 cut(s) 65, 374, 415, 1108
NmeAIII GCCGAG 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 791
NsiI ATGCAT 1 cut(s) 1198
NspI RCATGY 1 cut(s) 1233
PaeI GCATGC 1 cut(s) 1233
PaqCI CACCTGC 1 cut(s) 543
PciSI GCTCTTC 1 cut(s) 979
PcsI WCGNNNNNNNCGW 1 cut(s) 1599
PctI GAATGC 1 cut(s) 1551
PfeI GAWTC 5 cut(s) 321, 347, 365, 825, 880
PinAI ACCGGT 1 cut(s) 1382
PleI GAGTC 2 cut(s) 741, 1148
PluTI GGCGCC 1 cut(s) 417
PpsI GAGTC 2 cut(s) 741, 1148
PpuMI RGGWCCY 1 cut(s) 232
Psp5II RGGWCCY 1 cut(s) 232
Psp6I CCWGG 2 cut(s) 228, 708
PspFI CCCAGC 1 cut(s) 780
PspGI CCWGG 2 cut(s) 228, 708
PspN4I GGNNCC 4 cut(s) 65, 374, 415, 1108
PspOMI GGGCCC 1 cut(s) 372
PspPI GGNCC 5 cut(s) 43, 232, 372, 373, 1595
PspPPI RGGWCCY 1 cut(s) 232
PsrI GAACNNNNNNTAC 2 cut(s) 1478, 1510
PstNI CAGNNNCTG 2 cut(s) 1129, 1621
PvuII CAGCTG 2 cut(s) 671, 1214
RsaI GTAC 2 cut(s) 659, 1479
RsaNI GTAC 2 cut(s) 658, 1478
SacII CCGCGG 1 cut(s) 420
SapI GCTCTTC 1 cut(s) 979
SaqAI TTAA 2 cut(s) 1379, 1389
Sau3AI GATC 7 cut(s) 632, 741, 848, 943, 1266, 1519, 1569
Sau96I GGNCC 5 cut(s) 43, 232, 372, 373, 1595
SchI GAGTC 2 cut(s) 741, 1148
ScrFI CCNGG 8 cut(s) 230, 336, 362, 370, 371, 376, 377, 710
SduI GDGCHC 2 cut(s) 315, 376
SfaNI GCATC 2 cut(s) 964, 1073
SfoI GGCGCC 1 cut(s) 415
Sfr303I CCGCGG 1 cut(s) 420
SgrBI CCGCGG 1 cut(s) 420
SinI GGWCC 3 cut(s) 43, 232, 1595
SmaI CCCGGG 2 cut(s) 371, 377
SmlI CTYRAG 2 cut(s) 1402, 1556
SmoI CTYRAG 2 cut(s) 1402, 1556
SphI GCATGC 1 cut(s) 1233
SrfI GCCCGGGC 1 cut(s) 377
Sse9I AATT 3 cut(s) 1391, 1500, 1628
SspDI GGCGCC 1 cut(s) 413
SspMI CTAG 4 cut(s) 912, 1151, 1419, 1647
StyD4I CCNGG 8 cut(s) 228, 334, 360, 368, 369, 374, 375, 708
TaaI ACNGT 1 cut(s) 21
TaiI ACGT 1 cut(s) 209
TaqI TCGA 3 cut(s) 188, 319, 1635
TasI AATT 3 cut(s) 1391, 1500, 1628
TatI WGTACW 1 cut(s) 1477
TauI GCSGC 6 cut(s) 7, 31, 419, 422, 857, 1048
TfiI GAWTC 5 cut(s) 321, 347, 365, 825, 880
Tru1I TTAA 2 cut(s) 1379, 1389
Tru9I TTAA 2 cut(s) 1379, 1389
TscAI CASTG 3 cut(s) 760, 1276, 1543
TseFI GTSAC 1 cut(s) 791
TseI GCWGC 8 cut(s) 671, 857, 890, 989, 1057, 1214, 1283, 1529
Tsp45I GTSAC 1 cut(s) 791
TspDTI ATGAA 3 cut(s) 803, 1360, 1439
TspGWI ACGGA 1 cut(s) 1084
TspMI CCCGGG 2 cut(s) 369, 375
TspRI CASTG 3 cut(s) 760, 1276, 1543
VpaK11BI GGWCC 3 cut(s) 43, 232, 1595
XagI CCTNNNNNAGG 1 cut(s) 227
XceI RCATGY 1 cut(s) 1233
XcmI CCANNNNNNNNNTGG 2 cut(s) 305, 716
XmaI CCCGGG 2 cut(s) 369, 375
XspI CTAG 4 cut(s) 912, 1151, 1419, 1647
Zsp2I ATGCAT 1 cut(s) 1198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.